data_1XKA
#
_model_server_result.job_id            JrFrywYLgQY2ISrUiyeKdw 
_model_server_result.datetime_utc      '2024-11-05 21:15:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    1XKA 
#
_exptl.entry_id    1XKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XKA 
_cell.length_a            61.5 
_cell.length_b            65.8 
_cell.length_c            81.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 L CYS 50 1_555 A SG CYS 17 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 11 L CYS 55 1_555 A SG CYS 26 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 28 L CYS 72 1_555 A SG CYS 37 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 45 L CYS 89 1_555 A SG CYS 56 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 52 L CYS 96 1_555 A SG CYS 65 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf6 A SG CYS 67 L CYS 111 1_555 A SG CYS 80 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf7 A SG CYS 88 L CYS 132 1_555 B SG CYS 108 C CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 7 C CYS 22 1_555 B SG CYS 12 C CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf9 B SG CYS 27 C CYS 42 1_555 B SG CYS 43 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf10 B SG CYS 156 C CYS 168 1_555 B SG CYS 170 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf11 B SG CYS 181 C CYS 191 1_555 B SG CYS 209 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A C LYS 18 L LYS 62 1_555 A N BHD 19 L BHD 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C BHD 19 L BHD 63 1_555 A N GLY 20 L GLY 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 B OD1 ASP 56 C ASP 70 1_555 C CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? 
metalc ? metalc2 B O ASN 58 C ASN 72 1_555 C CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc3 B O GLN 61 C GLN 75 1_555 C CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc4 B OE2 GLU 63 C GLU 77 1_555 C CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.385 ? 
metalc ? metalc5 B OE2 GLU 66 C GLU 80 1_555 C CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XKA 
_atom_sites.fract_transf_matrix[1][1]    0.01626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA C 1 501 501 CA CA . 
D 4 4PP C 1 500 500 4PP 4PP . 
E 5 HOH L 1 544 544 HOH HOH . 
E 5 HOH L 2 545 545 HOH HOH . 
E 5 HOH L 3 548 548 HOH HOH . 
E 5 HOH L 4 549 549 HOH HOH . 
E 5 HOH L 5 550 550 HOH HOH . 
E 5 HOH L 6 551 551 HOH HOH . 
E 5 HOH L 7 552 552 HOH HOH . 
E 5 HOH L 8 553 553 HOH HOH . 
E 5 HOH L 9 554 554 HOH HOH . 
E 5 HOH L 10 555 555 HOH HOH . 
E 5 HOH L 11 556 556 HOH HOH . 
E 5 HOH L 12 561 561 HOH HOH . 
E 5 HOH L 13 611 611 HOH HOH . 
E 5 HOH L 14 612 612 HOH HOH . 
E 5 HOH L 15 613 613 HOH HOH . 
E 5 HOH L 16 614 614 HOH HOH . 
E 5 HOH L 17 615 615 HOH HOH . 
E 5 HOH L 18 616 616 HOH HOH . 
E 5 HOH L 19 617 617 HOH HOH . 
E 5 HOH L 20 618 618 HOH HOH . 
E 5 HOH L 21 619 619 HOH HOH . 
E 5 HOH L 22 620 620 HOH HOH . 
E 5 HOH L 23 621 621 HOH HOH . 
E 5 HOH L 24 629 629 HOH HOH . 
E 5 HOH L 25 630 630 HOH HOH . 
E 5 HOH L 26 631 631 HOH HOH . 
E 5 HOH L 27 632 632 HOH HOH . 
E 5 HOH L 28 633 633 HOH HOH . 
E 5 HOH L 29 634 634 HOH HOH . 
E 5 HOH L 30 635 635 HOH HOH . 
E 5 HOH L 31 674 674 HOH HOH . 
E 5 HOH L 32 694 694 HOH HOH . 
E 5 HOH L 33 695 695 HOH HOH . 
E 5 HOH L 34 696 696 HOH HOH . 
E 5 HOH L 35 697 697 HOH HOH . 
E 5 HOH L 36 698 698 HOH HOH . 
E 5 HOH L 37 699 699 HOH HOH . 
E 5 HOH L 38 700 700 HOH HOH . 
E 5 HOH L 39 701 701 HOH HOH . 
E 5 HOH L 40 702 702 HOH HOH . 
E 5 HOH L 41 703 703 HOH HOH . 
E 5 HOH L 42 704 704 HOH HOH . 
E 5 HOH L 43 705 705 HOH HOH . 
E 5 HOH L 44 706 706 HOH HOH . 
E 5 HOH L 45 707 707 HOH HOH . 
E 5 HOH L 46 708 708 HOH HOH . 
E 5 HOH L 47 709 709 HOH HOH . 
E 5 HOH L 48 710 710 HOH HOH . 
E 5 HOH L 49 711 711 HOH HOH . 
F 5 HOH C 1 502 502 HOH HOH . 
F 5 HOH C 2 503 503 HOH HOH . 
F 5 HOH C 3 504 504 HOH HOH . 
F 5 HOH C 4 505 505 HOH HOH . 
F 5 HOH C 5 506 506 HOH HOH . 
F 5 HOH C 6 507 507 HOH HOH . 
F 5 HOH C 7 508 508 HOH HOH . 
F 5 HOH C 8 509 509 HOH HOH . 
F 5 HOH C 9 510 510 HOH HOH . 
F 5 HOH C 10 511 511 HOH HOH . 
F 5 HOH C 11 512 512 HOH HOH . 
F 5 HOH C 12 513 513 HOH HOH . 
F 5 HOH C 13 514 514 HOH HOH . 
F 5 HOH C 14 515 515 HOH HOH . 
F 5 HOH C 15 516 516 HOH HOH . 
F 5 HOH C 16 517 517 HOH HOH . 
F 5 HOH C 17 518 518 HOH HOH . 
F 5 HOH C 18 519 519 HOH HOH . 
F 5 HOH C 19 520 520 HOH HOH . 
F 5 HOH C 20 521 521 HOH HOH . 
F 5 HOH C 21 522 522 HOH HOH . 
F 5 HOH C 22 523 523 HOH HOH . 
F 5 HOH C 23 524 524 HOH HOH . 
F 5 HOH C 24 525 525 HOH HOH . 
F 5 HOH C 25 526 526 HOH HOH . 
F 5 HOH C 26 527 527 HOH HOH . 
F 5 HOH C 27 528 528 HOH HOH . 
F 5 HOH C 28 529 529 HOH HOH . 
F 5 HOH C 29 530 530 HOH HOH . 
F 5 HOH C 30 531 531 HOH HOH . 
F 5 HOH C 31 532 532 HOH HOH . 
F 5 HOH C 32 533 533 HOH HOH . 
F 5 HOH C 33 534 534 HOH HOH . 
F 5 HOH C 34 535 535 HOH HOH . 
F 5 HOH C 35 536 536 HOH HOH . 
F 5 HOH C 36 537 537 HOH HOH . 
F 5 HOH C 37 538 538 HOH HOH . 
F 5 HOH C 38 539 539 HOH HOH . 
F 5 HOH C 39 540 540 HOH HOH . 
F 5 HOH C 40 541 541 HOH HOH . 
F 5 HOH C 41 542 542 HOH HOH . 
F 5 HOH C 42 543 543 HOH HOH . 
F 5 HOH C 43 546 546 HOH HOH . 
F 5 HOH C 44 547 547 HOH HOH . 
F 5 HOH C 45 557 557 HOH HOH . 
F 5 HOH C 46 558 558 HOH HOH . 
F 5 HOH C 47 559 559 HOH HOH . 
F 5 HOH C 48 560 560 HOH HOH . 
F 5 HOH C 49 562 562 HOH HOH . 
F 5 HOH C 50 563 563 HOH HOH . 
F 5 HOH C 51 564 564 HOH HOH . 
F 5 HOH C 52 565 565 HOH HOH . 
F 5 HOH C 53 566 566 HOH HOH . 
F 5 HOH C 54 567 567 HOH HOH . 
F 5 HOH C 55 568 568 HOH HOH . 
F 5 HOH C 56 569 569 HOH HOH . 
F 5 HOH C 57 570 570 HOH HOH . 
F 5 HOH C 58 571 571 HOH HOH . 
F 5 HOH C 59 572 572 HOH HOH . 
F 5 HOH C 60 573 573 HOH HOH . 
F 5 HOH C 61 574 574 HOH HOH . 
F 5 HOH C 62 575 575 HOH HOH . 
F 5 HOH C 63 576 576 HOH HOH . 
F 5 HOH C 64 577 577 HOH HOH . 
F 5 HOH C 65 578 578 HOH HOH . 
F 5 HOH C 66 579 579 HOH HOH . 
F 5 HOH C 67 580 580 HOH HOH . 
F 5 HOH C 68 581 581 HOH HOH . 
F 5 HOH C 69 582 582 HOH HOH . 
F 5 HOH C 70 583 583 HOH HOH . 
F 5 HOH C 71 584 584 HOH HOH . 
F 5 HOH C 72 585 585 HOH HOH . 
F 5 HOH C 73 586 586 HOH HOH . 
F 5 HOH C 74 587 587 HOH HOH . 
F 5 HOH C 75 588 588 HOH HOH . 
F 5 HOH C 76 589 589 HOH HOH . 
F 5 HOH C 77 590 590 HOH HOH . 
F 5 HOH C 78 591 591 HOH HOH . 
F 5 HOH C 79 592 592 HOH HOH . 
F 5 HOH C 80 593 593 HOH HOH . 
F 5 HOH C 81 594 594 HOH HOH . 
F 5 HOH C 82 595 595 HOH HOH . 
F 5 HOH C 83 596 596 HOH HOH . 
F 5 HOH C 84 597 597 HOH HOH . 
F 5 HOH C 85 598 598 HOH HOH . 
F 5 HOH C 86 599 599 HOH HOH . 
F 5 HOH C 87 600 600 HOH HOH . 
F 5 HOH C 88 601 601 HOH HOH . 
F 5 HOH C 89 602 602 HOH HOH . 
F 5 HOH C 90 603 603 HOH HOH . 
F 5 HOH C 91 604 604 HOH HOH . 
F 5 HOH C 92 605 605 HOH HOH . 
F 5 HOH C 93 606 606 HOH HOH . 
F 5 HOH C 94 607 607 HOH HOH . 
F 5 HOH C 95 608 608 HOH HOH . 
F 5 HOH C 96 609 609 HOH HOH . 
F 5 HOH C 97 610 610 HOH HOH . 
F 5 HOH C 98 622 622 HOH HOH . 
F 5 HOH C 99 623 623 HOH HOH . 
F 5 HOH C 100 624 624 HOH HOH . 
F 5 HOH C 101 625 625 HOH HOH . 
F 5 HOH C 102 626 626 HOH HOH . 
F 5 HOH C 103 627 627 HOH HOH . 
F 5 HOH C 104 628 628 HOH HOH . 
F 5 HOH C 105 636 636 HOH HOH . 
F 5 HOH C 106 637 637 HOH HOH . 
F 5 HOH C 107 638 638 HOH HOH . 
F 5 HOH C 108 639 639 HOH HOH . 
F 5 HOH C 109 640 640 HOH HOH . 
F 5 HOH C 110 641 641 HOH HOH . 
F 5 HOH C 111 642 642 HOH HOH . 
F 5 HOH C 112 643 643 HOH HOH . 
F 5 HOH C 113 644 644 HOH HOH . 
F 5 HOH C 114 645 645 HOH HOH . 
F 5 HOH C 115 646 646 HOH HOH . 
F 5 HOH C 116 647 647 HOH HOH . 
F 5 HOH C 117 648 648 HOH HOH . 
F 5 HOH C 118 649 649 HOH HOH . 
F 5 HOH C 119 650 650 HOH HOH . 
F 5 HOH C 120 651 651 HOH HOH . 
F 5 HOH C 121 652 652 HOH HOH . 
F 5 HOH C 122 653 653 HOH HOH . 
F 5 HOH C 123 654 654 HOH HOH . 
F 5 HOH C 124 655 655 HOH HOH . 
F 5 HOH C 125 656 656 HOH HOH . 
F 5 HOH C 126 657 657 HOH HOH . 
F 5 HOH C 127 658 658 HOH HOH . 
F 5 HOH C 128 659 659 HOH HOH . 
F 5 HOH C 129 660 660 HOH HOH . 
F 5 HOH C 130 661 661 HOH HOH . 
F 5 HOH C 131 662 662 HOH HOH . 
F 5 HOH C 132 663 663 HOH HOH . 
F 5 HOH C 133 664 664 HOH HOH . 
F 5 HOH C 134 665 665 HOH HOH . 
F 5 HOH C 135 666 666 HOH HOH . 
F 5 HOH C 136 667 667 HOH HOH . 
F 5 HOH C 137 668 668 HOH HOH . 
F 5 HOH C 138 669 669 HOH HOH . 
F 5 HOH C 139 670 670 HOH HOH . 
F 5 HOH C 140 671 671 HOH HOH . 
F 5 HOH C 141 672 672 HOH HOH . 
F 5 HOH C 142 673 673 HOH HOH . 
F 5 HOH C 143 675 675 HOH HOH . 
F 5 HOH C 144 676 676 HOH HOH . 
F 5 HOH C 145 677 677 HOH HOH . 
F 5 HOH C 146 678 678 HOH HOH . 
F 5 HOH C 147 679 679 HOH HOH . 
F 5 HOH C 148 680 680 HOH HOH . 
F 5 HOH C 149 681 681 HOH HOH . 
F 5 HOH C 150 682 682 HOH HOH . 
F 5 HOH C 151 683 683 HOH HOH . 
F 5 HOH C 152 684 684 HOH HOH . 
F 5 HOH C 153 685 685 HOH HOH . 
F 5 HOH C 154 686 686 HOH HOH . 
F 5 HOH C 155 687 687 HOH HOH . 
F 5 HOH C 156 688 688 HOH HOH . 
F 5 HOH C 157 689 689 HOH HOH . 
F 5 HOH C 158 690 690 HOH HOH . 
F 5 HOH C 159 691 691 HOH HOH . 
F 5 HOH C 160 692 692 HOH HOH . 
F 5 HOH C 161 693 693 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               22.865 
_atom_site.Cartn_y               4.934 
_atom_site.Cartn_z               17.878 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        69.49 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           1 
#