data_1XKF # _model_server_result.job_id m8vTkUJ_Dv6qUEGMPJ1oDA _model_server_result.datetime_utc '2025-09-05 14:17:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1XKF # _exptl.entry_id 1XKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XKF _cell.length_a 40.65 _cell.length_b 50.94 _cell.length_c 129.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 1 2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -40.65 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 14 1_555 A SG CYS 45 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 20 B CYS 14 1_555 B SG CYS 45 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A NE2 HIS 103 A HIS 97 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 A NE2 HIS 128 A HIS 122 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 C ZN ZN . A ZN 1001 1_555 E O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 C ZN ZN . A ZN 1001 1_555 E O HOH . A HOH 1077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 C ZN ZN . A ZN 1001 1_555 B NE2 HIS 128 B HIS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 F O HOH . B HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 F O HOH . B HOH 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 D ZN ZN . A ZN 1002 1_555 E O HOH . A HOH 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc9 D ZN ZN . A ZN 1002 1_555 E O HOH . A HOH 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc10 D ZN ZN . A ZN 1002 1_555 E O HOH . A HOH 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XKF _atom_sites.fract_transf_matrix[1][1] 0.0246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 3 HOH A 1 1003 8 HOH HOH . E 3 HOH A 2 1004 9 HOH HOH . E 3 HOH A 3 1005 11 HOH HOH . E 3 HOH A 4 1006 15 HOH HOH . E 3 HOH A 5 1007 17 HOH HOH . E 3 HOH A 6 1008 18 HOH HOH . E 3 HOH A 7 1009 19 HOH HOH . E 3 HOH A 8 1010 22 HOH HOH . E 3 HOH A 9 1011 23 HOH HOH . E 3 HOH A 10 1012 24 HOH HOH . E 3 HOH A 11 1013 25 HOH HOH . E 3 HOH A 12 1014 26 HOH HOH . E 3 HOH A 13 1015 27 HOH HOH . E 3 HOH A 14 1016 28 HOH HOH . E 3 HOH A 15 1017 29 HOH HOH . E 3 HOH A 16 1018 35 HOH HOH . E 3 HOH A 17 1019 36 HOH HOH . E 3 HOH A 18 1020 37 HOH HOH . E 3 HOH A 19 1021 38 HOH HOH . E 3 HOH A 20 1022 39 HOH HOH . E 3 HOH A 21 1023 40 HOH HOH . E 3 HOH A 22 1024 41 HOH HOH . E 3 HOH A 23 1025 44 HOH HOH . E 3 HOH A 24 1026 46 HOH HOH . E 3 HOH A 25 1027 48 HOH HOH . E 3 HOH A 26 1028 49 HOH HOH . E 3 HOH A 27 1029 51 HOH HOH . E 3 HOH A 28 1030 52 HOH HOH . E 3 HOH A 29 1031 53 HOH HOH . E 3 HOH A 30 1032 54 HOH HOH . E 3 HOH A 31 1033 56 HOH HOH . E 3 HOH A 32 1034 57 HOH HOH . E 3 HOH A 33 1035 59 HOH HOH . E 3 HOH A 34 1036 64 HOH HOH . E 3 HOH A 35 1037 66 HOH HOH . E 3 HOH A 36 1038 67 HOH HOH . E 3 HOH A 37 1039 68 HOH HOH . E 3 HOH A 38 1040 69 HOH HOH . E 3 HOH A 39 1041 72 HOH HOH . E 3 HOH A 40 1042 73 HOH HOH . E 3 HOH A 41 1043 75 HOH HOH . E 3 HOH A 42 1044 78 HOH HOH . E 3 HOH A 43 1045 83 HOH HOH . E 3 HOH A 44 1046 84 HOH HOH . E 3 HOH A 45 1047 86 HOH HOH . E 3 HOH A 46 1048 87 HOH HOH . E 3 HOH A 47 1049 91 HOH HOH . E 3 HOH A 48 1050 96 HOH HOH . E 3 HOH A 49 1051 97 HOH HOH . E 3 HOH A 50 1052 99 HOH HOH . E 3 HOH A 51 1053 102 HOH HOH . E 3 HOH A 52 1054 104 HOH HOH . E 3 HOH A 53 1055 107 HOH HOH . E 3 HOH A 54 1056 108 HOH HOH . E 3 HOH A 55 1057 111 HOH HOH . E 3 HOH A 56 1058 113 HOH HOH . E 3 HOH A 57 1059 115 HOH HOH . E 3 HOH A 58 1060 116 HOH HOH . E 3 HOH A 59 1061 117 HOH HOH . E 3 HOH A 60 1062 118 HOH HOH . E 3 HOH A 61 1063 119 HOH HOH . E 3 HOH A 62 1064 120 HOH HOH . E 3 HOH A 63 1065 125 HOH HOH . E 3 HOH A 64 1066 127 HOH HOH . E 3 HOH A 65 1067 130 HOH HOH . E 3 HOH A 66 1068 131 HOH HOH . E 3 HOH A 67 1069 132 HOH HOH . E 3 HOH A 68 1070 133 HOH HOH . E 3 HOH A 69 1071 135 HOH HOH . E 3 HOH A 70 1072 138 HOH HOH . E 3 HOH A 71 1073 139 HOH HOH . E 3 HOH A 72 1074 141 HOH HOH . E 3 HOH A 73 1075 142 HOH HOH . E 3 HOH A 74 1076 146 HOH HOH . E 3 HOH A 75 1077 148 HOH HOH . E 3 HOH A 76 1078 149 HOH HOH . E 3 HOH A 77 1079 150 HOH HOH . E 3 HOH A 78 1080 151 HOH HOH . E 3 HOH A 79 1081 153 HOH HOH . E 3 HOH A 80 1082 154 HOH HOH . E 3 HOH A 81 1083 155 HOH HOH . E 3 HOH A 82 1084 157 HOH HOH . E 3 HOH A 83 1085 158 HOH HOH . E 3 HOH A 84 1086 159 HOH HOH . E 3 HOH A 85 1087 164 HOH HOH . E 3 HOH A 86 1088 165 HOH HOH . E 3 HOH A 87 1089 166 HOH HOH . E 3 HOH A 88 1090 169 HOH HOH . E 3 HOH A 89 1091 170 HOH HOH . E 3 HOH A 90 1092 174 HOH HOH . E 3 HOH A 91 1093 175 HOH HOH . E 3 HOH A 92 1094 183 HOH HOH . E 3 HOH A 93 1095 184 HOH HOH . E 3 HOH A 94 1096 185 HOH HOH . E 3 HOH A 95 1097 188 HOH HOH . E 3 HOH A 96 1098 192 HOH HOH . E 3 HOH A 97 1099 193 HOH HOH . E 3 HOH A 98 1100 196 HOH HOH . E 3 HOH A 99 1101 197 HOH HOH . E 3 HOH A 100 1102 199 HOH HOH . E 3 HOH A 101 1103 202 HOH HOH . F 3 HOH B 1 128 1 HOH HOH . F 3 HOH B 2 129 2 HOH HOH . F 3 HOH B 3 130 3 HOH HOH . F 3 HOH B 4 131 4 HOH HOH . F 3 HOH B 5 132 5 HOH HOH . F 3 HOH B 6 133 6 HOH HOH . F 3 HOH B 7 134 7 HOH HOH . F 3 HOH B 8 135 10 HOH HOH . F 3 HOH B 9 136 12 HOH HOH . F 3 HOH B 10 137 13 HOH HOH . F 3 HOH B 11 138 14 HOH HOH . F 3 HOH B 12 139 16 HOH HOH . F 3 HOH B 13 140 20 HOH HOH . F 3 HOH B 14 141 21 HOH HOH . F 3 HOH B 15 142 30 HOH HOH . F 3 HOH B 16 143 31 HOH HOH . F 3 HOH B 17 144 32 HOH HOH . F 3 HOH B 18 145 33 HOH HOH . F 3 HOH B 19 146 34 HOH HOH . F 3 HOH B 20 147 42 HOH HOH . F 3 HOH B 21 148 43 HOH HOH . F 3 HOH B 22 149 45 HOH HOH . F 3 HOH B 23 150 47 HOH HOH . F 3 HOH B 24 151 50 HOH HOH . F 3 HOH B 25 152 55 HOH HOH . F 3 HOH B 26 153 58 HOH HOH . F 3 HOH B 27 154 60 HOH HOH . F 3 HOH B 28 155 61 HOH HOH . F 3 HOH B 29 156 62 HOH HOH . F 3 HOH B 30 157 63 HOH HOH . F 3 HOH B 31 158 65 HOH HOH . F 3 HOH B 32 159 70 HOH HOH . F 3 HOH B 33 160 71 HOH HOH . F 3 HOH B 34 161 74 HOH HOH . F 3 HOH B 35 162 76 HOH HOH . F 3 HOH B 36 163 77 HOH HOH . F 3 HOH B 37 164 79 HOH HOH . F 3 HOH B 38 165 80 HOH HOH . F 3 HOH B 39 166 81 HOH HOH . F 3 HOH B 40 167 82 HOH HOH . F 3 HOH B 41 168 85 HOH HOH . F 3 HOH B 42 169 88 HOH HOH . F 3 HOH B 43 170 89 HOH HOH . F 3 HOH B 44 171 90 HOH HOH . F 3 HOH B 45 172 92 HOH HOH . F 3 HOH B 46 173 93 HOH HOH . F 3 HOH B 47 174 94 HOH HOH . F 3 HOH B 48 175 95 HOH HOH . F 3 HOH B 49 176 98 HOH HOH . F 3 HOH B 50 177 100 HOH HOH . F 3 HOH B 51 178 101 HOH HOH . F 3 HOH B 52 179 103 HOH HOH . F 3 HOH B 53 180 105 HOH HOH . F 3 HOH B 54 181 106 HOH HOH . F 3 HOH B 55 182 109 HOH HOH . F 3 HOH B 56 183 110 HOH HOH . F 3 HOH B 57 184 112 HOH HOH . F 3 HOH B 58 185 114 HOH HOH . F 3 HOH B 59 186 121 HOH HOH . F 3 HOH B 60 187 122 HOH HOH . F 3 HOH B 61 188 123 HOH HOH . F 3 HOH B 62 189 124 HOH HOH . F 3 HOH B 63 190 126 HOH HOH . F 3 HOH B 64 191 128 HOH HOH . F 3 HOH B 65 192 129 HOH HOH . F 3 HOH B 66 193 134 HOH HOH . F 3 HOH B 67 194 136 HOH HOH . F 3 HOH B 68 195 137 HOH HOH . F 3 HOH B 69 196 140 HOH HOH . F 3 HOH B 70 197 143 HOH HOH . F 3 HOH B 71 198 144 HOH HOH . F 3 HOH B 72 199 145 HOH HOH . F 3 HOH B 73 200 147 HOH HOH . F 3 HOH B 74 201 152 HOH HOH . F 3 HOH B 75 202 156 HOH HOH . F 3 HOH B 76 203 160 HOH HOH . F 3 HOH B 77 204 161 HOH HOH . F 3 HOH B 78 205 162 HOH HOH . F 3 HOH B 79 206 163 HOH HOH . F 3 HOH B 80 207 167 HOH HOH . F 3 HOH B 81 208 168 HOH HOH . F 3 HOH B 82 209 171 HOH HOH . F 3 HOH B 83 210 172 HOH HOH . F 3 HOH B 84 211 173 HOH HOH . F 3 HOH B 85 212 176 HOH HOH . F 3 HOH B 86 213 177 HOH HOH . F 3 HOH B 87 214 178 HOH HOH . F 3 HOH B 88 215 179 HOH HOH . F 3 HOH B 89 216 181 HOH HOH . F 3 HOH B 90 217 182 HOH HOH . F 3 HOH B 91 218 186 HOH HOH . F 3 HOH B 92 219 187 HOH HOH . F 3 HOH B 93 220 189 HOH HOH . F 3 HOH B 94 221 190 HOH HOH . F 3 HOH B 95 222 191 HOH HOH . F 3 HOH B 96 223 194 HOH HOH . F 3 HOH B 97 224 195 HOH HOH . F 3 HOH B 98 225 198 HOH HOH . F 3 HOH B 99 226 200 HOH HOH . F 3 HOH B 100 227 201 HOH HOH . F 3 HOH B 101 228 203 HOH HOH . F 3 HOH B 102 229 204 HOH HOH . F 3 HOH B 103 230 205 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.531 _atom_site.Cartn_y 14.093 _atom_site.Cartn_z -0.704 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #