data_1XKU # _model_server_result.job_id K-au6YDPAcJetNmT05FKwA _model_server_result.datetime_utc '2024-12-21 11:51:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 1XKU # _exptl.entry_id 1XKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XKU _cell.length_a 55.78 _cell.length_b 124.145 _cell.length_c 129.609 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 64.8045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 A SG CYS 284 A CYS 284 1_555 A SG CYS 317 A CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? covale ? covale1 A ND2 ASN 182 A ASN 182 1_555 B C1 NAG . A NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 A ND2 ASN 233 A ASN 233 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 274 A ASN 274 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1XKU _atom_sites.fract_transf_matrix[1][1] 0.017928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 800 800 NAG NAG . C 2 NAG A 1 801 801 NAG NAG . D 2 NAG A 1 802 802 NAG NAG . E 3 TRS A 1 968 968 TRS TMN . F 4 HOH A 1 803 803 HOH HOH . F 4 HOH A 2 804 804 HOH HOH . F 4 HOH A 3 805 805 HOH HOH . F 4 HOH A 4 806 806 HOH HOH . F 4 HOH A 5 807 807 HOH HOH . F 4 HOH A 6 808 808 HOH HOH . F 4 HOH A 7 809 809 HOH HOH . F 4 HOH A 8 810 810 HOH HOH . F 4 HOH A 9 811 811 HOH HOH . F 4 HOH A 10 812 812 HOH HOH . F 4 HOH A 11 813 813 HOH HOH . F 4 HOH A 12 814 814 HOH HOH . F 4 HOH A 13 815 815 HOH HOH . F 4 HOH A 14 816 816 HOH HOH . F 4 HOH A 15 817 817 HOH HOH . F 4 HOH A 16 818 818 HOH HOH . F 4 HOH A 17 819 819 HOH HOH . F 4 HOH A 18 820 820 HOH HOH . F 4 HOH A 19 821 821 HOH HOH . F 4 HOH A 20 822 822 HOH HOH . F 4 HOH A 21 823 823 HOH HOH . F 4 HOH A 22 824 824 HOH HOH . F 4 HOH A 23 825 825 HOH HOH . F 4 HOH A 24 826 826 HOH HOH . F 4 HOH A 25 827 827 HOH HOH . F 4 HOH A 26 828 828 HOH HOH . F 4 HOH A 27 829 829 HOH HOH . F 4 HOH A 28 830 830 HOH HOH . F 4 HOH A 29 831 831 HOH HOH . F 4 HOH A 30 832 832 HOH HOH . F 4 HOH A 31 833 833 HOH HOH . F 4 HOH A 32 834 834 HOH HOH . F 4 HOH A 33 835 835 HOH HOH . F 4 HOH A 34 836 836 HOH HOH . F 4 HOH A 35 837 837 HOH HOH . F 4 HOH A 36 838 838 HOH HOH . F 4 HOH A 37 839 839 HOH HOH . F 4 HOH A 38 840 840 HOH HOH . F 4 HOH A 39 841 841 HOH HOH . F 4 HOH A 40 842 842 HOH HOH . F 4 HOH A 41 843 843 HOH HOH . F 4 HOH A 42 844 844 HOH HOH . F 4 HOH A 43 845 845 HOH HOH . F 4 HOH A 44 846 846 HOH HOH . F 4 HOH A 45 847 847 HOH HOH . F 4 HOH A 46 848 848 HOH HOH . F 4 HOH A 47 849 849 HOH HOH . F 4 HOH A 48 850 850 HOH HOH . F 4 HOH A 49 851 851 HOH HOH . F 4 HOH A 50 852 852 HOH HOH . F 4 HOH A 51 853 853 HOH HOH . F 4 HOH A 52 854 854 HOH HOH . F 4 HOH A 53 855 855 HOH HOH . F 4 HOH A 54 856 856 HOH HOH . F 4 HOH A 55 857 857 HOH HOH . F 4 HOH A 56 858 858 HOH HOH . F 4 HOH A 57 859 859 HOH HOH . F 4 HOH A 58 860 860 HOH HOH . F 4 HOH A 59 861 861 HOH HOH . F 4 HOH A 60 862 862 HOH HOH . F 4 HOH A 61 863 863 HOH HOH . F 4 HOH A 62 864 864 HOH HOH . F 4 HOH A 63 865 865 HOH HOH . F 4 HOH A 64 866 866 HOH HOH . F 4 HOH A 65 867 867 HOH HOH . F 4 HOH A 66 868 868 HOH HOH . F 4 HOH A 67 869 869 HOH HOH . F 4 HOH A 68 870 870 HOH HOH . F 4 HOH A 69 871 871 HOH HOH . F 4 HOH A 70 872 872 HOH HOH . F 4 HOH A 71 873 873 HOH HOH . F 4 HOH A 72 874 874 HOH HOH . F 4 HOH A 73 875 875 HOH HOH . F 4 HOH A 74 876 876 HOH HOH . F 4 HOH A 75 877 877 HOH HOH . F 4 HOH A 76 878 878 HOH HOH . F 4 HOH A 77 879 879 HOH HOH . F 4 HOH A 78 880 880 HOH HOH . F 4 HOH A 79 881 881 HOH HOH . F 4 HOH A 80 882 882 HOH HOH . F 4 HOH A 81 883 883 HOH HOH . F 4 HOH A 82 884 884 HOH HOH . F 4 HOH A 83 885 885 HOH HOH . F 4 HOH A 84 886 886 HOH HOH . F 4 HOH A 85 887 887 HOH HOH . F 4 HOH A 86 888 888 HOH HOH . F 4 HOH A 87 889 889 HOH HOH . F 4 HOH A 88 890 890 HOH HOH . F 4 HOH A 89 891 891 HOH HOH . F 4 HOH A 90 892 892 HOH HOH . F 4 HOH A 91 893 893 HOH HOH . F 4 HOH A 92 894 894 HOH HOH . F 4 HOH A 93 895 895 HOH HOH . F 4 HOH A 94 896 896 HOH HOH . F 4 HOH A 95 897 897 HOH HOH . F 4 HOH A 96 898 898 HOH HOH . F 4 HOH A 97 899 899 HOH HOH . F 4 HOH A 98 900 900 HOH HOH . F 4 HOH A 99 901 901 HOH HOH . F 4 HOH A 100 902 902 HOH HOH . F 4 HOH A 101 903 903 HOH HOH . F 4 HOH A 102 904 904 HOH HOH . F 4 HOH A 103 905 905 HOH HOH . F 4 HOH A 104 906 906 HOH HOH . F 4 HOH A 105 907 907 HOH HOH . F 4 HOH A 106 908 908 HOH HOH . F 4 HOH A 107 909 909 HOH HOH . F 4 HOH A 108 910 910 HOH HOH . F 4 HOH A 109 911 911 HOH HOH . F 4 HOH A 110 912 912 HOH HOH . F 4 HOH A 111 913 913 HOH HOH . F 4 HOH A 112 914 914 HOH HOH . F 4 HOH A 113 915 915 HOH HOH . F 4 HOH A 114 916 916 HOH HOH . F 4 HOH A 115 917 917 HOH HOH . F 4 HOH A 116 918 918 HOH HOH . F 4 HOH A 117 919 919 HOH HOH . F 4 HOH A 118 920 920 HOH HOH . F 4 HOH A 119 921 921 HOH HOH . F 4 HOH A 120 922 922 HOH HOH . F 4 HOH A 121 923 923 HOH HOH . F 4 HOH A 122 924 924 HOH HOH . F 4 HOH A 123 925 925 HOH HOH . F 4 HOH A 124 926 926 HOH HOH . F 4 HOH A 125 927 927 HOH HOH . F 4 HOH A 126 928 928 HOH HOH . F 4 HOH A 127 929 929 HOH HOH . F 4 HOH A 128 930 930 HOH HOH . F 4 HOH A 129 931 931 HOH HOH . F 4 HOH A 130 932 932 HOH HOH . F 4 HOH A 131 933 933 HOH HOH . F 4 HOH A 132 934 934 HOH HOH . F 4 HOH A 133 935 935 HOH HOH . F 4 HOH A 134 936 936 HOH HOH . F 4 HOH A 135 937 937 HOH HOH . F 4 HOH A 136 938 938 HOH HOH . F 4 HOH A 137 939 939 HOH HOH . F 4 HOH A 138 940 940 HOH HOH . F 4 HOH A 139 941 941 HOH HOH . F 4 HOH A 140 942 942 HOH HOH . F 4 HOH A 141 943 943 HOH HOH . F 4 HOH A 142 944 944 HOH HOH . F 4 HOH A 143 945 945 HOH HOH . F 4 HOH A 144 946 946 HOH HOH . F 4 HOH A 145 947 947 HOH HOH . F 4 HOH A 146 948 948 HOH HOH . F 4 HOH A 147 949 949 HOH HOH . F 4 HOH A 148 950 950 HOH HOH . F 4 HOH A 149 951 951 HOH HOH . F 4 HOH A 150 952 952 HOH HOH . F 4 HOH A 151 953 953 HOH HOH . F 4 HOH A 152 954 954 HOH HOH . F 4 HOH A 153 955 955 HOH HOH . F 4 HOH A 154 956 956 HOH HOH . F 4 HOH A 155 957 957 HOH HOH . F 4 HOH A 156 958 958 HOH HOH . F 4 HOH A 157 959 959 HOH HOH . F 4 HOH A 158 960 960 HOH HOH . F 4 HOH A 159 961 961 HOH HOH . F 4 HOH A 160 962 962 HOH HOH . F 4 HOH A 161 963 963 HOH HOH . F 4 HOH A 162 964 964 HOH HOH . F 4 HOH A 163 965 965 HOH HOH . F 4 HOH A 164 966 966 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -11.194 31.365 47.573 1 61.32 ? C1 NAG 800 A 1 HETATM 2 C C2 NAG . . . B 2 -10.148 31.244 46.452 1 63.84 ? C2 NAG 800 A 1 HETATM 3 C C3 NAG . . . B 2 -10.036 32.568 45.698 1 66.69 ? C3 NAG 800 A 1 HETATM 4 C C4 NAG . . . B 2 -11.376 32.84 45.014 1 69.25 ? C4 NAG 800 A 1 HETATM 5 C C5 NAG . . . B 2 -12.434 32.925 46.128 1 68.93 ? C5 NAG 800 A 1 HETATM 6 C C6 NAG . . . B 2 -13.845 33.097 45.557 1 70.4 ? C6 NAG 800 A 1 HETATM 7 C C7 NAG . . . B 2 -8.216 29.84 46.129 1 63.69 ? C7 NAG 800 A 1 HETATM 8 C C8 NAG . . . B 2 -7.002 30.309 45.351 1 66.74 ? C8 NAG 800 A 1 HETATM 9 N N2 NAG . . . B 2 -8.851 30.746 46.882 1 62.39 ? N2 NAG 800 A 1 HETATM 10 O O3 NAG . . . B 2 -8.984 32.538 44.758 1 67.6 ? O3 NAG 800 A 1 HETATM 11 O O4 NAG . . . B 2 -11.318 34.004 44.178 1 72.27 ? O4 NAG 800 A 1 HETATM 12 O O5 NAG . . . B 2 -12.421 31.737 46.93 1 66.45 ? O5 NAG 800 A 1 HETATM 13 O O6 NAG . . . B 2 -14.794 33.166 46.608 1 69.24 ? O6 NAG 800 A 1 HETATM 14 O O7 NAG . . . B 2 -8.598 28.683 46.027 1 61.03 ? O7 NAG 800 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #