data_1XL2
#
_model_server_result.job_id            FTMyD3IrUBK1jT6q-IhgCw 
_model_server_result.datetime_utc      '2024-12-18 01:06:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xl2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2502}' 
#
_entry.id    1XL2 
#
_exptl.entry_id    1XL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XL2 
_cell.length_a            51.9 
_cell.length_b            57.7 
_cell.length_c            62.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XL2 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 216 n n 
C1 C2 GOL sing 217 n n 
C1 H11 GOL sing 218 n n 
C1 H12 GOL sing 219 n n 
O1 HO1 GOL sing 220 n n 
C2 O2 GOL sing 221 n n 
C2 C3 GOL sing 222 n n 
C2 H2 GOL sing 223 n n 
O2 HO2 GOL sing 224 n n 
C3 O3 GOL sing 225 n n 
C3 H31 GOL sing 226 n n 
C3 H32 GOL sing 227 n n 
O3 HO3 GOL sing 228 n n 
#
_atom_sites.entry_id                     1XL2 
_atom_sites.fract_transf_matrix[1][1]    0.019268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 2601 2601 CL CL . 
D 3 189 A 1 1001 1001 189 189 . 
E 2 CL B 1 2602 2602 CL CL . 
F 4 GOL B 1 2502 2502 GOL GOL . 
G 5 HOH A 1 2602 1 HOH HOH . 
G 5 HOH A 2 2603 2 HOH HOH . 
G 5 HOH A 3 2604 3 HOH HOH . 
G 5 HOH A 4 2605 4 HOH HOH . 
G 5 HOH A 5 2606 5 HOH HOH . 
G 5 HOH A 6 2607 6 HOH HOH . 
G 5 HOH A 7 2608 9 HOH HOH . 
G 5 HOH A 8 2609 10 HOH HOH . 
G 5 HOH A 9 2610 11 HOH HOH . 
G 5 HOH A 10 2611 13 HOH HOH . 
G 5 HOH A 11 2612 14 HOH HOH . 
G 5 HOH A 12 2613 15 HOH HOH . 
G 5 HOH A 13 2614 17 HOH HOH . 
G 5 HOH A 14 2615 18 HOH HOH . 
G 5 HOH A 15 2616 22 HOH HOH . 
G 5 HOH A 16 2617 24 HOH HOH . 
G 5 HOH A 17 2618 25 HOH HOH . 
G 5 HOH A 18 2619 26 HOH HOH . 
G 5 HOH A 19 2620 28 HOH HOH . 
G 5 HOH A 20 2621 29 HOH HOH . 
G 5 HOH A 21 2622 30 HOH HOH . 
G 5 HOH A 22 2623 31 HOH HOH . 
G 5 HOH A 23 2624 32 HOH HOH . 
G 5 HOH A 24 2625 34 HOH HOH . 
G 5 HOH A 25 2626 35 HOH HOH . 
G 5 HOH A 26 2627 36 HOH HOH . 
G 5 HOH A 27 2628 37 HOH HOH . 
G 5 HOH A 28 2629 39 HOH HOH . 
G 5 HOH A 29 2630 40 HOH HOH . 
G 5 HOH A 30 2631 42 HOH HOH . 
G 5 HOH A 31 2632 43 HOH HOH . 
G 5 HOH A 32 2633 44 HOH HOH . 
G 5 HOH A 33 2634 47 HOH HOH . 
G 5 HOH A 34 2635 49 HOH HOH . 
G 5 HOH A 35 2636 50 HOH HOH . 
G 5 HOH A 36 2637 53 HOH HOH . 
G 5 HOH A 37 2638 55 HOH HOH . 
G 5 HOH A 38 2639 59 HOH HOH . 
G 5 HOH A 39 2640 60 HOH HOH . 
G 5 HOH A 40 2641 62 HOH HOH . 
G 5 HOH A 41 2642 63 HOH HOH . 
G 5 HOH A 42 2643 67 HOH HOH . 
G 5 HOH A 43 2644 68 HOH HOH . 
G 5 HOH A 44 2645 69 HOH HOH . 
G 5 HOH A 45 2646 72 HOH HOH . 
G 5 HOH A 46 2647 74 HOH HOH . 
G 5 HOH A 47 2648 75 HOH HOH . 
G 5 HOH A 48 2649 76 HOH HOH . 
G 5 HOH A 49 2650 80 HOH HOH . 
G 5 HOH A 50 2651 81 HOH HOH . 
G 5 HOH A 51 2652 84 HOH HOH . 
G 5 HOH A 52 2653 85 HOH HOH . 
G 5 HOH A 53 2654 87 HOH HOH . 
G 5 HOH A 54 2655 88 HOH HOH . 
G 5 HOH A 55 2656 89 HOH HOH . 
G 5 HOH A 56 2657 91 HOH HOH . 
G 5 HOH A 57 2658 92 HOH HOH . 
G 5 HOH A 58 2659 93 HOH HOH . 
G 5 HOH A 59 2660 94 HOH HOH . 
G 5 HOH A 60 2661 97 HOH HOH . 
G 5 HOH A 61 2662 100 HOH HOH . 
G 5 HOH A 62 2663 103 HOH HOH . 
G 5 HOH A 63 2664 107 HOH HOH . 
G 5 HOH A 64 2665 108 HOH HOH . 
G 5 HOH A 65 2666 109 HOH HOH . 
G 5 HOH A 66 2667 110 HOH HOH . 
G 5 HOH A 67 2668 112 HOH HOH . 
G 5 HOH A 68 2669 113 HOH HOH . 
G 5 HOH A 69 2670 115 HOH HOH . 
G 5 HOH A 70 2671 117 HOH HOH . 
G 5 HOH A 71 2672 118 HOH HOH . 
G 5 HOH A 72 2673 119 HOH HOH . 
G 5 HOH A 73 2674 120 HOH HOH . 
G 5 HOH A 74 2675 124 HOH HOH . 
G 5 HOH A 75 2676 126 HOH HOH . 
G 5 HOH A 76 2677 127 HOH HOH . 
G 5 HOH A 77 2678 129 HOH HOH . 
G 5 HOH A 78 2679 132 HOH HOH . 
G 5 HOH A 79 2680 134 HOH HOH . 
G 5 HOH A 80 2681 136 HOH HOH . 
G 5 HOH A 81 2682 137 HOH HOH . 
G 5 HOH A 82 2683 141 HOH HOH . 
G 5 HOH A 83 2684 142 HOH HOH . 
G 5 HOH A 84 2685 147 HOH HOH . 
G 5 HOH A 85 2686 148 HOH HOH . 
G 5 HOH A 86 2687 150 HOH HOH . 
G 5 HOH A 87 2688 152 HOH HOH . 
G 5 HOH A 88 2689 153 HOH HOH . 
G 5 HOH A 89 2690 154 HOH HOH . 
G 5 HOH A 90 2691 155 HOH HOH . 
G 5 HOH A 91 2692 156 HOH HOH . 
G 5 HOH A 92 2693 157 HOH HOH . 
G 5 HOH A 93 2694 158 HOH HOH . 
G 5 HOH A 94 2695 159 HOH HOH . 
G 5 HOH A 95 2696 160 HOH HOH . 
G 5 HOH A 96 2697 163 HOH HOH . 
G 5 HOH A 97 2698 164 HOH HOH . 
G 5 HOH A 98 2699 166 HOH HOH . 
G 5 HOH A 99 2700 167 HOH HOH . 
G 5 HOH A 100 2701 168 HOH HOH . 
G 5 HOH A 101 2702 170 HOH HOH . 
G 5 HOH A 102 2703 171 HOH HOH . 
G 5 HOH A 103 2704 172 HOH HOH . 
G 5 HOH A 104 2705 173 HOH HOH . 
G 5 HOH A 105 2706 176 HOH HOH . 
G 5 HOH A 106 2707 177 HOH HOH . 
G 5 HOH A 107 2708 187 HOH HOH . 
G 5 HOH A 108 2709 190 HOH HOH . 
G 5 HOH A 109 2710 193 HOH HOH . 
G 5 HOH A 110 2711 198 HOH HOH . 
G 5 HOH A 111 2712 201 HOH HOH . 
G 5 HOH A 112 2713 204 HOH HOH . 
G 5 HOH A 113 2714 210 HOH HOH . 
H 5 HOH B 1 2603 7 HOH HOH . 
H 5 HOH B 2 2604 8 HOH HOH . 
H 5 HOH B 3 2605 12 HOH HOH . 
H 5 HOH B 4 2606 16 HOH HOH . 
H 5 HOH B 5 2607 19 HOH HOH . 
H 5 HOH B 6 2608 20 HOH HOH . 
H 5 HOH B 7 2609 21 HOH HOH . 
H 5 HOH B 8 2610 23 HOH HOH . 
H 5 HOH B 9 2611 27 HOH HOH . 
H 5 HOH B 10 2612 33 HOH HOH . 
H 5 HOH B 11 2613 38 HOH HOH . 
H 5 HOH B 12 2614 41 HOH HOH . 
H 5 HOH B 13 2615 45 HOH HOH . 
H 5 HOH B 14 2616 46 HOH HOH . 
H 5 HOH B 15 2617 48 HOH HOH . 
H 5 HOH B 16 2618 51 HOH HOH . 
H 5 HOH B 17 2619 52 HOH HOH . 
H 5 HOH B 18 2620 54 HOH HOH . 
H 5 HOH B 19 2621 56 HOH HOH . 
H 5 HOH B 20 2622 57 HOH HOH . 
H 5 HOH B 21 2623 58 HOH HOH . 
H 5 HOH B 22 2624 61 HOH HOH . 
H 5 HOH B 23 2625 64 HOH HOH . 
H 5 HOH B 24 2626 65 HOH HOH . 
H 5 HOH B 25 2627 66 HOH HOH . 
H 5 HOH B 26 2628 70 HOH HOH . 
H 5 HOH B 27 2629 73 HOH HOH . 
H 5 HOH B 28 2630 77 HOH HOH . 
H 5 HOH B 29 2631 78 HOH HOH . 
H 5 HOH B 30 2632 79 HOH HOH . 
H 5 HOH B 31 2633 82 HOH HOH . 
H 5 HOH B 32 2634 83 HOH HOH . 
H 5 HOH B 33 2635 86 HOH HOH . 
H 5 HOH B 34 2636 90 HOH HOH . 
H 5 HOH B 35 2637 95 HOH HOH . 
H 5 HOH B 36 2638 96 HOH HOH . 
H 5 HOH B 37 2639 98 HOH HOH . 
H 5 HOH B 38 2640 99 HOH HOH . 
H 5 HOH B 39 2641 101 HOH HOH . 
H 5 HOH B 40 2642 102 HOH HOH . 
H 5 HOH B 41 2643 104 HOH HOH . 
H 5 HOH B 42 2644 105 HOH HOH . 
H 5 HOH B 43 2645 106 HOH HOH . 
H 5 HOH B 44 2646 111 HOH HOH . 
H 5 HOH B 45 2647 114 HOH HOH . 
H 5 HOH B 46 2648 116 HOH HOH . 
H 5 HOH B 47 2649 122 HOH HOH . 
H 5 HOH B 48 2650 123 HOH HOH . 
H 5 HOH B 49 2651 125 HOH HOH . 
H 5 HOH B 50 2652 128 HOH HOH . 
H 5 HOH B 51 2653 130 HOH HOH . 
H 5 HOH B 52 2654 131 HOH HOH . 
H 5 HOH B 53 2655 133 HOH HOH . 
H 5 HOH B 54 2656 135 HOH HOH . 
H 5 HOH B 55 2657 138 HOH HOH . 
H 5 HOH B 56 2658 139 HOH HOH . 
H 5 HOH B 57 2659 140 HOH HOH . 
H 5 HOH B 58 2660 143 HOH HOH . 
H 5 HOH B 59 2661 144 HOH HOH . 
H 5 HOH B 60 2662 145 HOH HOH . 
H 5 HOH B 61 2663 146 HOH HOH . 
H 5 HOH B 62 2664 149 HOH HOH . 
H 5 HOH B 63 2665 151 HOH HOH . 
H 5 HOH B 64 2666 161 HOH HOH . 
H 5 HOH B 65 2667 162 HOH HOH . 
H 5 HOH B 66 2668 165 HOH HOH . 
H 5 HOH B 67 2669 169 HOH HOH . 
H 5 HOH B 68 2670 174 HOH HOH . 
H 5 HOH B 69 2671 175 HOH HOH . 
H 5 HOH B 70 2672 178 HOH HOH . 
H 5 HOH B 71 2673 180 HOH HOH . 
H 5 HOH B 72 2674 182 HOH HOH . 
H 5 HOH B 73 2675 183 HOH HOH . 
H 5 HOH B 74 2676 184 HOH HOH . 
H 5 HOH B 75 2677 186 HOH HOH . 
H 5 HOH B 76 2678 200 HOH HOH . 
H 5 HOH B 77 2679 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 14.489 14.771 11.34 1 51.86 ? C1 GOL 2502 B 1 
HETATM 2 O O1 GOL . . . F 4 13.24 15.1 11.947 1 42.4 ? O1 GOL 2502 B 1 
HETATM 3 C C2 GOL . . . F 4 15.566 14.451 12.389 1 50.54 ? C2 GOL 2502 B 1 
HETATM 4 O O2 GOL . . . F 4 14.998 14.279 13.693 1 42.61 ? O2 GOL 2502 B 1 
HETATM 5 C C3 GOL . . . F 4 16.585 15.608 12.413 1 59.45 ? C3 GOL 2502 B 1 
HETATM 6 O O3 GOL . . . F 4 17.475 15.473 11.303 1 68.07 ? O3 GOL 2502 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           1000 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#