data_1XLP # _model_server_result.job_id L0vDsc3fowx0-RSiTMQrTw _model_server_result.datetime_utc '2025-07-20 22:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":107}' # _entry.id 1XLP # _exptl.entry_id 1XLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XLP _cell.length_a 66.22 _cell.length_b 66.22 _cell.length_c 151.751 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 B,E,H 4 1 C,F,I 4 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_763 -y+2,-x+1,-z-3/2 0 -1 0 -1 0 0 0 0 -1 132.44 66.22 -227.6265 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 39 A CYS 39 1_555 D FE1 FES . A FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A SG CYS 45 A CYS 45 1_555 D FE1 FES . A FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 48 A CYS 48 1_555 D FE2 FES . A FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 A SG CYS 86 A CYS 86 1_555 D FE2 FES . A FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 B SG CYS 39 B CYS 39 1_555 E FE1 FES . B FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc6 B SG CYS 45 B CYS 45 1_555 E FE1 FES . B FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 B SG CYS 48 B CYS 48 1_555 E FE2 FES . B FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 B SG CYS 86 B CYS 86 1_555 E FE2 FES . B FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 C SG CYS 39 C CYS 39 1_555 F FE1 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc10 C SG CYS 45 C CYS 45 1_555 F FE1 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 C SG CYS 48 C CYS 48 1_555 F FE2 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc12 C SG CYS 86 C CYS 86 1_555 F FE2 FES . C FES 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 1XLP _atom_sites.fract_transf_matrix[1][1] 0.015101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FES A 1 107 107 FES FES . E 2 FES B 1 107 107 FES FES . F 2 FES C 1 107 107 FES FES . G 3 HOH A 1 108 3 HOH HOH . G 3 HOH A 2 109 4 HOH HOH . G 3 HOH A 3 110 8 HOH HOH . G 3 HOH A 4 111 14 HOH HOH . G 3 HOH A 5 112 16 HOH HOH . G 3 HOH A 6 113 19 HOH HOH . G 3 HOH A 7 114 21 HOH HOH . G 3 HOH A 8 115 22 HOH HOH . G 3 HOH A 9 116 23 HOH HOH . G 3 HOH A 10 117 24 HOH HOH . G 3 HOH A 11 118 29 HOH HOH . G 3 HOH A 12 119 31 HOH HOH . G 3 HOH A 13 120 34 HOH HOH . G 3 HOH A 14 121 35 HOH HOH . G 3 HOH A 15 122 36 HOH HOH . G 3 HOH A 16 123 44 HOH HOH . G 3 HOH A 17 124 46 HOH HOH . G 3 HOH A 18 125 48 HOH HOH . G 3 HOH A 19 126 49 HOH HOH . G 3 HOH A 20 127 51 HOH HOH . G 3 HOH A 21 128 52 HOH HOH . G 3 HOH A 22 129 53 HOH HOH . G 3 HOH A 23 130 56 HOH HOH . G 3 HOH A 24 131 58 HOH HOH . G 3 HOH A 25 132 59 HOH HOH . G 3 HOH A 26 133 61 HOH HOH . G 3 HOH A 27 134 66 HOH HOH . G 3 HOH A 28 135 72 HOH HOH . G 3 HOH A 29 136 74 HOH HOH . G 3 HOH A 30 137 79 HOH HOH . G 3 HOH A 31 138 81 HOH HOH . G 3 HOH A 32 139 83 HOH HOH . G 3 HOH A 33 140 87 HOH HOH . G 3 HOH A 34 141 92 HOH HOH . G 3 HOH A 35 142 93 HOH HOH . G 3 HOH A 36 143 95 HOH HOH . G 3 HOH A 37 144 100 HOH HOH . G 3 HOH A 38 145 102 HOH HOH . G 3 HOH A 39 146 104 HOH HOH . G 3 HOH A 40 147 107 HOH HOH . G 3 HOH A 41 148 113 HOH HOH . G 3 HOH A 42 149 120 HOH HOH . G 3 HOH A 43 150 122 HOH HOH . G 3 HOH A 44 151 125 HOH HOH . G 3 HOH A 45 152 135 HOH HOH . G 3 HOH A 46 153 137 HOH HOH . G 3 HOH A 47 154 141 HOH HOH . G 3 HOH A 48 155 142 HOH HOH . G 3 HOH A 49 156 143 HOH HOH . G 3 HOH A 50 157 146 HOH HOH . G 3 HOH A 51 158 147 HOH HOH . G 3 HOH A 52 159 150 HOH HOH . G 3 HOH A 53 160 154 HOH HOH . G 3 HOH A 54 161 155 HOH HOH . G 3 HOH A 55 162 158 HOH HOH . G 3 HOH A 56 163 159 HOH HOH . G 3 HOH A 57 164 161 HOH HOH . G 3 HOH A 58 165 163 HOH HOH . G 3 HOH A 59 166 166 HOH HOH . G 3 HOH A 60 167 168 HOH HOH . G 3 HOH A 61 168 171 HOH HOH . G 3 HOH A 62 169 173 HOH HOH . G 3 HOH A 63 170 174 HOH HOH . G 3 HOH A 64 171 176 HOH HOH . G 3 HOH A 65 172 179 HOH HOH . G 3 HOH A 66 173 180 HOH HOH . G 3 HOH A 67 174 181 HOH HOH . G 3 HOH A 68 175 182 HOH HOH . G 3 HOH A 69 176 183 HOH HOH . G 3 HOH A 70 177 192 HOH HOH . G 3 HOH A 71 178 193 HOH HOH . G 3 HOH A 72 179 195 HOH HOH . G 3 HOH A 73 180 197 HOH HOH . G 3 HOH A 74 181 198 HOH HOH . G 3 HOH A 75 182 199 HOH HOH . G 3 HOH A 76 183 201 HOH HOH . G 3 HOH A 77 184 202 HOH HOH . G 3 HOH A 78 185 203 HOH HOH . G 3 HOH A 79 186 204 HOH HOH . G 3 HOH A 80 187 211 HOH HOH . G 3 HOH A 81 188 212 HOH HOH . G 3 HOH A 82 189 213 HOH HOH . G 3 HOH A 83 190 229 HOH HOH . G 3 HOH A 84 191 230 HOH HOH . G 3 HOH A 85 192 231 HOH HOH . G 3 HOH A 86 193 233 HOH HOH . G 3 HOH A 87 194 234 HOH HOH . G 3 HOH A 88 195 248 HOH HOH . G 3 HOH A 89 196 249 HOH HOH . G 3 HOH A 90 197 250 HOH HOH . G 3 HOH A 91 198 251 HOH HOH . H 3 HOH B 1 108 1 HOH HOH . H 3 HOH B 2 109 6 HOH HOH . H 3 HOH B 3 110 10 HOH HOH . H 3 HOH B 4 111 13 HOH HOH . H 3 HOH B 5 112 20 HOH HOH . H 3 HOH B 6 113 26 HOH HOH . H 3 HOH B 7 114 27 HOH HOH . H 3 HOH B 8 115 30 HOH HOH . H 3 HOH B 9 116 37 HOH HOH . H 3 HOH B 10 117 38 HOH HOH . H 3 HOH B 11 118 39 HOH HOH . H 3 HOH B 12 119 40 HOH HOH . H 3 HOH B 13 120 43 HOH HOH . H 3 HOH B 14 121 47 HOH HOH . H 3 HOH B 15 122 50 HOH HOH . H 3 HOH B 16 123 55 HOH HOH . H 3 HOH B 17 124 57 HOH HOH . H 3 HOH B 18 125 64 HOH HOH . H 3 HOH B 19 126 65 HOH HOH . H 3 HOH B 20 127 69 HOH HOH . H 3 HOH B 21 128 71 HOH HOH . H 3 HOH B 22 129 73 HOH HOH . H 3 HOH B 23 130 75 HOH HOH . H 3 HOH B 24 131 76 HOH HOH . H 3 HOH B 25 132 77 HOH HOH . H 3 HOH B 26 133 80 HOH HOH . H 3 HOH B 27 134 91 HOH HOH . H 3 HOH B 28 135 94 HOH HOH . H 3 HOH B 29 136 99 HOH HOH . H 3 HOH B 30 137 103 HOH HOH . H 3 HOH B 31 138 105 HOH HOH . H 3 HOH B 32 139 106 HOH HOH . H 3 HOH B 33 140 109 HOH HOH . H 3 HOH B 34 141 110 HOH HOH . H 3 HOH B 35 142 111 HOH HOH . H 3 HOH B 36 143 114 HOH HOH . H 3 HOH B 37 144 123 HOH HOH . H 3 HOH B 38 145 126 HOH HOH . H 3 HOH B 39 146 132 HOH HOH . H 3 HOH B 40 147 136 HOH HOH . H 3 HOH B 41 148 138 HOH HOH . H 3 HOH B 42 149 139 HOH HOH . H 3 HOH B 43 150 140 HOH HOH . H 3 HOH B 44 151 144 HOH HOH . H 3 HOH B 45 152 151 HOH HOH . H 3 HOH B 46 153 156 HOH HOH . H 3 HOH B 47 154 160 HOH HOH . H 3 HOH B 48 155 162 HOH HOH . H 3 HOH B 49 156 167 HOH HOH . H 3 HOH B 50 157 169 HOH HOH . H 3 HOH B 51 158 172 HOH HOH . H 3 HOH B 52 159 178 HOH HOH . H 3 HOH B 53 160 186 HOH HOH . H 3 HOH B 54 161 188 HOH HOH . H 3 HOH B 55 162 189 HOH HOH . H 3 HOH B 56 163 191 HOH HOH . H 3 HOH B 57 164 196 HOH HOH . H 3 HOH B 58 165 205 HOH HOH . H 3 HOH B 59 166 214 HOH HOH . H 3 HOH B 60 167 215 HOH HOH . H 3 HOH B 61 168 216 HOH HOH . H 3 HOH B 62 169 217 HOH HOH . H 3 HOH B 63 170 218 HOH HOH . H 3 HOH B 64 171 241 HOH HOH . H 3 HOH B 65 172 242 HOH HOH . H 3 HOH B 66 173 243 HOH HOH . H 3 HOH B 67 174 244 HOH HOH . H 3 HOH B 68 175 245 HOH HOH . H 3 HOH B 69 176 246 HOH HOH . H 3 HOH B 70 177 247 HOH HOH . H 3 HOH B 71 178 252 HOH HOH . H 3 HOH B 72 179 253 HOH HOH . I 3 HOH C 1 108 2 HOH HOH . I 3 HOH C 2 109 5 HOH HOH . I 3 HOH C 3 110 7 HOH HOH . I 3 HOH C 4 111 9 HOH HOH . I 3 HOH C 5 112 11 HOH HOH . I 3 HOH C 6 113 12 HOH HOH . I 3 HOH C 7 114 15 HOH HOH . I 3 HOH C 8 115 17 HOH HOH . I 3 HOH C 9 116 18 HOH HOH . I 3 HOH C 10 117 25 HOH HOH . I 3 HOH C 11 118 28 HOH HOH . I 3 HOH C 12 119 32 HOH HOH . I 3 HOH C 13 120 33 HOH HOH . I 3 HOH C 14 121 41 HOH HOH . I 3 HOH C 15 122 42 HOH HOH . I 3 HOH C 16 123 45 HOH HOH . I 3 HOH C 17 124 54 HOH HOH . I 3 HOH C 18 125 60 HOH HOH . I 3 HOH C 19 126 62 HOH HOH . I 3 HOH C 20 127 63 HOH HOH . I 3 HOH C 21 128 67 HOH HOH . I 3 HOH C 22 129 68 HOH HOH . I 3 HOH C 23 130 70 HOH HOH . I 3 HOH C 24 131 78 HOH HOH . I 3 HOH C 25 132 82 HOH HOH . I 3 HOH C 26 133 84 HOH HOH . I 3 HOH C 27 134 85 HOH HOH . I 3 HOH C 28 135 86 HOH HOH . I 3 HOH C 29 136 88 HOH HOH . I 3 HOH C 30 137 89 HOH HOH . I 3 HOH C 31 138 90 HOH HOH . I 3 HOH C 32 139 96 HOH HOH . I 3 HOH C 33 140 97 HOH HOH . I 3 HOH C 34 141 98 HOH HOH . I 3 HOH C 35 142 101 HOH HOH . I 3 HOH C 36 143 108 HOH HOH . I 3 HOH C 37 144 112 HOH HOH . I 3 HOH C 38 145 115 HOH HOH . I 3 HOH C 39 146 116 HOH HOH . I 3 HOH C 40 147 117 HOH HOH . I 3 HOH C 41 148 118 HOH HOH . I 3 HOH C 42 149 119 HOH HOH . I 3 HOH C 43 150 121 HOH HOH . I 3 HOH C 44 151 124 HOH HOH . I 3 HOH C 45 152 127 HOH HOH . I 3 HOH C 46 153 128 HOH HOH . I 3 HOH C 47 154 129 HOH HOH . I 3 HOH C 48 155 130 HOH HOH . I 3 HOH C 49 156 131 HOH HOH . I 3 HOH C 50 157 133 HOH HOH . I 3 HOH C 51 158 134 HOH HOH . I 3 HOH C 52 159 145 HOH HOH . I 3 HOH C 53 160 148 HOH HOH . I 3 HOH C 54 161 149 HOH HOH . I 3 HOH C 55 162 152 HOH HOH . I 3 HOH C 56 163 153 HOH HOH . I 3 HOH C 57 164 157 HOH HOH . I 3 HOH C 58 165 164 HOH HOH . I 3 HOH C 59 166 165 HOH HOH . I 3 HOH C 60 167 170 HOH HOH . I 3 HOH C 61 168 175 HOH HOH . I 3 HOH C 62 169 177 HOH HOH . I 3 HOH C 63 170 184 HOH HOH . I 3 HOH C 64 171 185 HOH HOH . I 3 HOH C 65 172 187 HOH HOH . I 3 HOH C 66 173 190 HOH HOH . I 3 HOH C 67 174 194 HOH HOH . I 3 HOH C 68 175 200 HOH HOH . I 3 HOH C 69 176 206 HOH HOH . I 3 HOH C 70 177 207 HOH HOH . I 3 HOH C 71 178 208 HOH HOH . I 3 HOH C 72 179 209 HOH HOH . I 3 HOH C 73 180 210 HOH HOH . I 3 HOH C 74 181 219 HOH HOH . I 3 HOH C 75 182 220 HOH HOH . I 3 HOH C 76 183 221 HOH HOH . I 3 HOH C 77 184 222 HOH HOH . I 3 HOH C 78 185 223 HOH HOH . I 3 HOH C 79 186 224 HOH HOH . I 3 HOH C 80 187 225 HOH HOH . I 3 HOH C 81 188 226 HOH HOH . I 3 HOH C 82 189 227 HOH HOH . I 3 HOH C 83 190 228 HOH HOH . I 3 HOH C 84 191 232 HOH HOH . I 3 HOH C 85 192 235 HOH HOH . I 3 HOH C 86 193 236 HOH HOH . I 3 HOH C 87 194 237 HOH HOH . I 3 HOH C 88 195 238 HOH HOH . I 3 HOH C 89 196 239 HOH HOH . I 3 HOH C 90 197 240 HOH HOH . I 3 HOH C 91 198 254 HOH HOH . I 3 HOH C 92 199 255 HOH HOH . I 3 HOH C 93 200 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . D 2 46.23 29.262 -116.732 1 18.35 ? FE1 FES 107 A 1 HETATM 2 FE FE2 FES . . . D 2 48.268 28.146 -115.287 1 18.35 ? FE2 FES 107 A 1 HETATM 3 S S1 FES . . . D 2 47.749 27.846 -117.43 1 18.37 ? S1 FES 107 A 1 HETATM 4 S S2 FES . . . D 2 46.67 29.611 -114.575 1 18.26 ? S2 FES 107 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #