data_1XLS
#
_model_server_result.job_id            5mDCdTh6kAjGZ0IVuygJGw 
_model_server_result.datetime_utc      '2025-02-26 21:28:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xls 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":803}' 
#
_entry.id    1XLS 
#
_exptl.entry_id    1XLS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.435 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(9cis)-retinoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         79.02 
_cell.angle_beta          85.81 
_cell.angle_gamma         67.22 
_cell.entry_id            1XLS 
_cell.length_a            68.271 
_cell.length_b            88.381 
_cell.length_c            105.494 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XLS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
PISA tetrameric 4 author_and_software_defined_assembly 4 
PISA hexadecameric 16 software_defined_assembly 5 
PISA octameric 8 software_defined_assembly 6 
PISA octameric 8 software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I,M,Q,U,Y,CA,GA,KA 1 1 
B,F,J,N,R,V,Z,DA,HA 2 1 
C,G,K,O,S,W,AA,EA,IA,LA 3 1 
D,H,L,P,T,X,BA,FA,JA,MA 4 1 
B,F,J,N,R,V,Z,DA,HA 5 2 
D,H,L,P,T,X,BA,FA,JA,MA 5 3 
A,C,E,G,I,K,M,O,Q,S,U,W,Y,AA,CA,EA,GA,IA,KA,LA 5 1 
A,C,E,G,I,K,M,O,Q,S,U,W,Y,AA,CA,EA,GA,IA,KA,LA 6 1 
B,F,J,N,R,V,Z,DA,HA 7 1 
D,H,L,P,T,X,BA,FA,JA,MA 7 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_546 x,y-1,z+1 1 0 0 0 1 0 0 0 1 -26.512745 -62.931104 103.562769 
3 'crystal symmetry operation' 1_646 x+1,y-1,z+1 1 0 0 0 1 0 0 0 1 41.758255 -62.931104 103.562769 
4 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 68.271 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
#
_chem_comp.formula           'C20 H28 O2' 
_chem_comp.formula_weight    300.435 
_chem_comp.id                9CR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(9cis)-retinoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C15 9CR doub 1 n n 
C15 C14 9CR sing 2 n n 
C15 O2 9CR sing 3 n n 
C14 C13 9CR doub 4 e n 
C13 C12 9CR sing 5 n n 
C13 C20 9CR sing 6 n n 
C12 C11 9CR doub 7 e n 
C11 C10 9CR sing 8 n n 
C18 C5 9CR sing 9 n n 
C10 C9 9CR doub 10 z n 
C9 C19 9CR sing 11 n n 
C9 C8 9CR sing 12 n n 
C8 C7 9CR doub 13 e n 
C5 C4 9CR sing 14 n n 
C5 C6 9CR doub 15 n n 
C4 C3 9CR sing 16 n n 
C7 C6 9CR sing 17 n n 
C6 C1 9CR sing 18 n n 
C3 C2 9CR sing 19 n n 
C1 C17 9CR sing 20 n n 
C1 C2 9CR sing 21 n n 
C1 C16 9CR sing 22 n n 
C2 H1 9CR sing 23 n n 
C2 H2 9CR sing 24 n n 
C3 H3 9CR sing 25 n n 
C3 H4 9CR sing 26 n n 
C4 H5 9CR sing 27 n n 
C4 H6 9CR sing 28 n n 
C7 H7 9CR sing 29 n n 
C8 H8 9CR sing 30 n n 
C10 H9 9CR sing 31 n n 
C11 H10 9CR sing 32 n n 
C12 H11 9CR sing 33 n n 
C14 H12 9CR sing 34 n n 
C16 H13 9CR sing 35 n n 
C16 H14 9CR sing 36 n n 
C16 H15 9CR sing 37 n n 
C17 H16 9CR sing 38 n n 
C17 H17 9CR sing 39 n n 
C17 H18 9CR sing 40 n n 
C18 H19 9CR sing 41 n n 
C18 H20 9CR sing 42 n n 
C18 H21 9CR sing 43 n n 
C19 H22 9CR sing 44 n n 
C19 H23 9CR sing 45 n n 
C19 H24 9CR sing 46 n n 
C20 H25 9CR sing 47 n n 
C20 H26 9CR sing 48 n n 
C20 H27 9CR sing 49 n n 
O2 H28 9CR sing 50 n n 
#
_atom_sites.entry_id                     1XLS 
_atom_sites.fract_transf_matrix[1][1]    0.014648 
_atom_sites.fract_transf_matrix[1][2]    -0.006153 
_atom_sites.fract_transf_matrix[1][3]    0.000013 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012272 
_atom_sites.fract_transf_matrix[2][3]    -0.0022 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 4 9CR A 1 801 1 9CR UNK . 
R 4 9CR B 1 802 1 9CR UNK . 
S 4 9CR C 1 803 1 9CR UNK . 
T 4 9CR D 1 804 1 9CR UNK . 
U 5 TCD E 1 805 1 TCD TCP . 
V 5 TCD F 1 806 1 TCD TCP . 
W 5 TCD G 1 807 1 TCD TCP . 
X 5 TCD H 1 808 1 TCD TCP . 
Y 6 HOH A 1 44 44 HOH TIP . 
Y 6 HOH A 2 49 49 HOH TIP . 
Y 6 HOH A 3 57 57 HOH TIP . 
Y 6 HOH A 4 64 64 HOH TIP . 
Y 6 HOH A 5 72 72 HOH TIP . 
Y 6 HOH A 6 74 74 HOH TIP . 
Y 6 HOH A 7 78 78 HOH TIP . 
Z 6 HOH B 1 1 1 HOH TIP . 
Z 6 HOH B 2 14 14 HOH TIP . 
Z 6 HOH B 3 23 23 HOH TIP . 
Z 6 HOH B 4 46 46 HOH TIP . 
Z 6 HOH B 5 59 59 HOH TIP . 
Z 6 HOH B 6 80 80 HOH TIP . 
Z 6 HOH B 7 84 84 HOH TIP . 
Z 6 HOH B 8 85 85 HOH TIP . 
AA 6 HOH C 1 10 10 HOH TIP . 
AA 6 HOH C 2 13 13 HOH TIP . 
AA 6 HOH C 3 16 16 HOH TIP . 
AA 6 HOH C 4 19 19 HOH TIP . 
AA 6 HOH C 5 36 36 HOH TIP . 
AA 6 HOH C 6 41 41 HOH TIP . 
AA 6 HOH C 7 42 42 HOH TIP . 
AA 6 HOH C 8 58 58 HOH TIP . 
AA 6 HOH C 9 68 68 HOH TIP . 
AA 6 HOH C 10 70 70 HOH TIP . 
BA 6 HOH D 1 3 3 HOH TIP . 
BA 6 HOH D 2 4 4 HOH TIP . 
BA 6 HOH D 3 6 6 HOH TIP . 
BA 6 HOH D 4 11 11 HOH TIP . 
BA 6 HOH D 5 12 12 HOH TIP . 
BA 6 HOH D 6 15 15 HOH TIP . 
BA 6 HOH D 7 17 17 HOH TIP . 
BA 6 HOH D 8 18 18 HOH TIP . 
BA 6 HOH D 9 20 20 HOH TIP . 
BA 6 HOH D 10 21 21 HOH TIP . 
BA 6 HOH D 11 28 28 HOH TIP . 
BA 6 HOH D 12 35 35 HOH TIP . 
BA 6 HOH D 13 37 37 HOH TIP . 
BA 6 HOH D 14 40 40 HOH TIP . 
BA 6 HOH D 15 45 45 HOH TIP . 
BA 6 HOH D 16 47 47 HOH TIP . 
BA 6 HOH D 17 52 52 HOH TIP . 
BA 6 HOH D 18 60 60 HOH TIP . 
BA 6 HOH D 19 61 61 HOH TIP . 
BA 6 HOH D 20 66 66 HOH TIP . 
CA 6 HOH E 1 25 25 HOH TIP . 
CA 6 HOH E 2 50 50 HOH TIP . 
CA 6 HOH E 3 79 79 HOH TIP . 
CA 6 HOH E 4 83 83 HOH TIP . 
DA 6 HOH F 1 9 9 HOH TIP . 
DA 6 HOH F 2 24 24 HOH TIP . 
DA 6 HOH F 3 27 27 HOH TIP . 
DA 6 HOH F 4 31 31 HOH TIP . 
DA 6 HOH F 5 33 33 HOH TIP . 
DA 6 HOH F 6 43 43 HOH TIP . 
DA 6 HOH F 7 48 48 HOH TIP . 
DA 6 HOH F 8 51 51 HOH TIP . 
DA 6 HOH F 9 53 53 HOH TIP . 
DA 6 HOH F 10 54 54 HOH TIP . 
DA 6 HOH F 11 56 56 HOH TIP . 
DA 6 HOH F 12 67 67 HOH TIP . 
DA 6 HOH F 13 69 69 HOH TIP . 
DA 6 HOH F 14 81 81 HOH TIP . 
DA 6 HOH F 15 82 82 HOH TIP . 
DA 6 HOH F 16 86 86 HOH TIP . 
DA 6 HOH F 17 88 88 HOH TIP . 
EA 6 HOH G 1 2 2 HOH TIP . 
EA 6 HOH G 2 26 26 HOH TIP . 
EA 6 HOH G 3 29 29 HOH TIP . 
EA 6 HOH G 4 32 32 HOH TIP . 
EA 6 HOH G 5 39 39 HOH TIP . 
EA 6 HOH G 6 63 63 HOH TIP . 
EA 6 HOH G 7 65 65 HOH TIP . 
EA 6 HOH G 8 73 73 HOH TIP . 
EA 6 HOH G 9 76 76 HOH TIP . 
EA 6 HOH G 10 87 87 HOH TIP . 
FA 6 HOH H 1 5 5 HOH TIP . 
FA 6 HOH H 2 22 22 HOH TIP . 
FA 6 HOH H 3 71 71 HOH TIP . 
FA 6 HOH H 4 77 77 HOH TIP . 
GA 6 HOH I 1 75 75 HOH TIP . 
HA 6 HOH J 1 38 38 HOH TIP . 
IA 6 HOH K 1 55 55 HOH TIP . 
JA 6 HOH L 1 8 8 HOH TIP . 
KA 6 HOH M 1 30 30 HOH TIP . 
LA 6 HOH O 1 62 62 HOH TIP . 
MA 6 HOH P 1 7 7 HOH TIP . 
MA 6 HOH P 2 34 34 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9CR . . . S 4 -24.16 20.439 30.737 1 36.09 ? C1 9CR 803 C 1 
HETATM 2 C C2 9CR . . . S 4 -24.886 21.809 31.226 1 38.06 ? C2 9CR 803 C 1 
HETATM 3 C C3 9CR . . . S 4 -24.675 23.134 30.347 1 40.44 ? C3 9CR 803 C 1 
HETATM 4 C C4 9CR . . . S 4 -23.452 23.154 29.661 1 42.98 ? C4 9CR 803 C 1 
HETATM 5 C C5 9CR . . . S 4 -23 22.041 28.916 1 41.57 ? C5 9CR 803 C 1 
HETATM 6 C C6 9CR . . . S 4 -23.271 20.615 29.328 1 37.39 ? C6 9CR 803 C 1 
HETATM 7 C C7 9CR . . . S 4 -22.85 19.438 28.633 1 32.16 ? C7 9CR 803 C 1 
HETATM 8 C C8 9CR . . . S 4 -23.016 18.94 27.363 1 37.61 ? C8 9CR 803 C 1 
HETATM 9 C C9 9CR . . . S 4 -22.49 17.835 26.698 1 41.65 ? C9 9CR 803 C 1 
HETATM 10 C C10 9CR . . . S 4 -22.827 17.576 25.362 1 48.63 ? C10 9CR 803 C 1 
HETATM 11 C C11 9CR . . . S 4 -23.691 18.396 24.637 1 47.69 ? C11 9CR 803 C 1 
HETATM 12 C C12 9CR . . . S 4 -24.02 18.154 23.332 1 48.09 ? C12 9CR 803 C 1 
HETATM 13 C C13 9CR . . . S 4 -24.897 18.98 22.516 1 47.9 ? C13 9CR 803 C 1 
HETATM 14 C C14 9CR . . . S 4 -24.787 18.686 21.145 1 48.92 ? C14 9CR 803 C 1 
HETATM 15 C C15 9CR . . . S 4 -25.501 19.299 19.928 1 46.66 ? C15 9CR 803 C 1 
HETATM 16 C C16 9CR . . . S 4 -25.42 19.538 30.37 1 39.44 ? C16 9CR 803 C 1 
HETATM 17 C C17 9CR . . . S 4 -23.484 19.695 31.946 1 36.62 ? C17 9CR 803 C 1 
HETATM 18 C C18 9CR . . . S 4 -22.224 22.517 27.682 1 38.92 ? C18 9CR 803 C 1 
HETATM 19 C C19 9CR . . . S 4 -21.477 16.791 27.338 1 47.43 ? C19 9CR 803 C 1 
HETATM 20 C C20 9CR . . . S 4 -25.85 20.076 23.063 1 47.95 ? C20 9CR 803 C 1 
HETATM 21 O O1 9CR . . . S 4 -24.931 19.448 18.875 1 47.15 ? O1 9CR 803 C 1 
HETATM 22 O O2 9CR . . . S 4 -26.731 19.645 20.083 1 45.7 ? O2 9CR 803 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#