data_1XLT # _model_server_result.job_id DOqSFXXnN6IJuStOgq4eig _model_server_result.datetime_utc '2024-11-09 01:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":500}' # _entry.id 1XLT # _exptl.entry_id 1XLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XLT _cell.length_a 95.372 _cell.length_b 171.082 _cell.length_c 203.181 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,P,Q,R,S 1 1 D,E,F,L,M,T,U,V 2 1 G,H,I,N,O,W,X,Y,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 S N N ? 6 V N N ? 6 Z N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n J GLC 1 J 1 GLC A 600 SUC 3 n J FRU 2 J 2 FRU A 600 SUC 3 n K GLC 1 K 1 GLC B 600 SUC 3 n K FRU 2 K 2 FRU B 600 SUC 3 n L GLC 1 L 1 GLC D 600 SUC 3 n L FRU 2 L 2 FRU D 600 SUC 3 n M GLC 1 M 1 GLC E 600 SUC 3 n M FRU 2 M 2 FRU E 600 SUC 3 n N GLC 1 N 1 GLC G 600 SUC 3 n N FRU 2 N 2 FRU G 600 SUC 3 n O GLC 1 O 1 GLC H 600 SUC 3 n O FRU 2 O 2 FRU H 600 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J C1 GLC . J GLC 1 1_555 J O2 FRU . J FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 sing covale ? covale2 K C1 GLC . K GLC 1 1_555 K O2 FRU . K FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing covale ? covale3 L C1 GLC . L GLC 1 1_555 L O2 FRU . L FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 sing covale ? covale4 M C1 GLC . M GLC 1 1_555 M O2 FRU . M FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 sing covale ? covale5 N C1 GLC . N GLC 1 1_555 N O2 FRU . N FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 sing covale ? covale6 O C1 GLC . O GLC 1 1_555 O O2 FRU . O FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 sing metalc ? metalc1 A O ALA 159 A ALA 159 1_555 Q NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc2 A O PRO 171 A PRO 171 1_555 Q NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 Q NA NA . A NA 601 1_555 B OD2 ASP 330 B ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc4 D O ALA 159 D ALA 159 1_555 U NA NA . D NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 D O PRO 171 D PRO 171 1_555 U NA NA . D NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 U NA NA . D NA 602 1_555 E OD2 ASP 330 E ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 G O ALA 159 G ALA 159 1_555 X NA NA . G NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 G O PRO 171 G PRO 171 1_555 X NA NA . G NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 X NA NA . G NA 603 1_555 H OD2 ASP 330 H ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 358 n n PA O2A NDP sing 359 n n PA O5B NDP sing 360 n n PA O3 NDP sing 361 n n O2A HOA2 NDP sing 362 n n O5B C5B NDP sing 363 n n C5B C4B NDP sing 364 n n C5B H51A NDP sing 365 n n C5B H52A NDP sing 366 n n C4B O4B NDP sing 367 n n C4B C3B NDP sing 368 n n C4B H4B NDP sing 369 n n O4B C1B NDP sing 370 n n C3B O3B NDP sing 371 n n C3B C2B NDP sing 372 n n C3B H3B NDP sing 373 n n O3B HO3A NDP sing 374 n n C2B O2B NDP sing 375 n n C2B C1B NDP sing 376 n n C2B H2B NDP sing 377 n n O2B P2B NDP sing 378 n n C1B N9A NDP sing 379 n n C1B H1B NDP sing 380 n n N9A C8A NDP sing 381 n y N9A C4A NDP sing 382 n y C8A N7A NDP doub 383 n y C8A H8A NDP sing 384 n n N7A C5A NDP sing 385 n y C5A C6A NDP sing 386 n y C5A C4A NDP doub 387 n y C6A N6A NDP sing 388 n n C6A N1A NDP doub 389 n y N6A H61A NDP sing 390 n n N6A H62A NDP sing 391 n n N1A C2A NDP sing 392 n y C2A N3A NDP doub 393 n y C2A H2A NDP sing 394 n n N3A C4A NDP sing 395 n y O3 PN NDP sing 396 n n PN O1N NDP doub 397 n n PN O2N NDP sing 398 n n PN O5D NDP sing 399 n n O2N H21N NDP sing 400 n n O5D C5D NDP sing 401 n n C5D C4D NDP sing 402 n n C5D H51N NDP sing 403 n n C5D H52N NDP sing 404 n n C4D O4D NDP sing 405 n n C4D C3D NDP sing 406 n n C4D H4D NDP sing 407 n n O4D C1D NDP sing 408 n n C3D O3D NDP sing 409 n n C3D C2D NDP sing 410 n n C3D H3D NDP sing 411 n n O3D HO3N NDP sing 412 n n C2D O2D NDP sing 413 n n C2D C1D NDP sing 414 n n C2D H2D NDP sing 415 n n O2D HO2N NDP sing 416 n n C1D N1N NDP sing 417 n n C1D H1D NDP sing 418 n n N1N C2N NDP sing 419 n n N1N C6N NDP sing 420 n n C2N C3N NDP doub 421 n n C2N H2N NDP sing 422 n n C3N C7N NDP sing 423 n n C3N C4N NDP sing 424 n n C7N O7N NDP doub 425 n n C7N N7N NDP sing 426 n n N7N H71N NDP sing 427 n n N7N H72N NDP sing 428 n n C4N C5N NDP sing 429 n n C4N H41N NDP sing 430 n n C4N H42N NDP sing 431 n n C5N C6N NDP doub 432 n n C5N H5N NDP sing 433 n n C6N H6N NDP sing 434 n n P2B O1X NDP doub 435 n n P2B O2X NDP sing 436 n n P2B O3X NDP sing 437 n n O2X HOP2 NDP sing 438 n n O3X HOP3 NDP sing 439 n n # _atom_sites.entry_id 1XLT _atom_sites.fract_transf_matrix[1][1] 0.010485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 4 NAD A 1 400 400 NAD NAD . Q 5 NA A 1 601 601 NA NA . R 4 NAD B 1 400 400 NAD NAD . S 6 NDP C 1 500 500 NDP NDP . T 4 NAD D 1 400 400 NAD NAD . U 5 NA D 1 602 602 NA NA . V 6 NDP F 1 500 500 NDP NDP . W 4 NAD G 1 400 400 NAD NAD . X 5 NA G 1 603 603 NA NA . Y 4 NAD H 1 400 400 NAD NAD . Z 6 NDP I 1 500 500 NDP NDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . V 6 56.393 -8.55 70.74 1 52.91 ? PA NDP 500 F 1 HETATM 2 O O1A NDP . . . V 6 55.597 -7.574 71.506 1 50.95 ? O1A NDP 500 F 1 HETATM 3 O O2A NDP . . . V 6 55.758 -9.705 70.102 1 54.42 ? O2A NDP 500 F 1 HETATM 4 O O5B NDP . . . V 6 57.205 -7.718 69.662 1 51.41 ? O5B NDP 500 F 1 HETATM 5 C C5B NDP . . . V 6 58.336 -6.923 69.785 1 51.69 ? C5B NDP 500 F 1 HETATM 6 C C4B NDP . . . V 6 58.634 -5.764 68.903 1 51.85 ? C4B NDP 500 F 1 HETATM 7 O O4B NDP . . . V 6 59.954 -5.71 68.266 1 51.94 ? O4B NDP 500 F 1 HETATM 8 C C3B NDP . . . V 6 57.75 -5.622 67.768 1 52.34 ? C3B NDP 500 F 1 HETATM 9 O O3B NDP . . . V 6 56.546 -4.91 68.191 1 52.63 ? O3B NDP 500 F 1 HETATM 10 C C2B NDP . . . V 6 58.426 -4.977 66.635 1 52.48 ? C2B NDP 500 F 1 HETATM 11 O O2B NDP . . . V 6 58.001 -3.862 65.969 1 54.54 ? O2B NDP 500 F 1 HETATM 12 C C1B NDP . . . V 6 59.777 -4.749 67.144 1 50.95 ? C1B NDP 500 F 1 HETATM 13 N N9A NDP . . . V 6 60.997 -5.035 66.211 1 50.05 ? N9A NDP 500 F 1 HETATM 14 C C8A NDP . . . V 6 61.124 -6.106 65.315 1 50.42 ? C8A NDP 500 F 1 HETATM 15 N N7A NDP . . . V 6 62.288 -6.045 64.677 1 50.5 ? N7A NDP 500 F 1 HETATM 16 C C5A NDP . . . V 6 62.97 -4.945 65.118 1 49.57 ? C5A NDP 500 F 1 HETATM 17 C C6A NDP . . . V 6 64.214 -4.26 64.898 1 49.08 ? C6A NDP 500 F 1 HETATM 18 N N6A NDP . . . V 6 65.096 -4.736 63.992 1 49.14 ? N6A NDP 500 F 1 HETATM 19 N N1A NDP . . . V 6 64.502 -3.12 65.61 1 48.16 ? N1A NDP 500 F 1 HETATM 20 C C2A NDP . . . V 6 63.631 -2.591 66.542 1 48.01 ? C2A NDP 500 F 1 HETATM 21 N N3A NDP . . . V 6 62.435 -3.126 66.84 1 48.11 ? N3A NDP 500 F 1 HETATM 22 C C4A NDP . . . V 6 62.112 -4.258 66.158 1 49.63 ? C4A NDP 500 F 1 HETATM 23 O O3 NDP . . . V 6 57.62 -9.189 71.575 1 53.03 ? O3 NDP 500 F 1 HETATM 24 P PN NDP . . . V 6 57.891 -9.12 73.255 1 52.37 ? PN NDP 500 F 1 HETATM 25 O O1N NDP . . . V 6 57.828 -7.798 73.913 1 52.38 ? O1N NDP 500 F 1 HETATM 26 O O2N NDP . . . V 6 59.15 -9.865 73.302 1 54.31 ? O2N NDP 500 F 1 HETATM 27 O O5D NDP . . . V 6 56.686 -10.085 73.39 1 52.17 ? O5D NDP 500 F 1 HETATM 28 C C5D NDP . . . V 6 56.507 -11.472 73.181 1 52.2 ? C5D NDP 500 F 1 HETATM 29 C C4D NDP . . . V 6 55.22 -12.095 72.681 1 51.87 ? C4D NDP 500 F 1 HETATM 30 O O4D NDP . . . V 6 55.35 -13.337 71.942 1 51.39 ? O4D NDP 500 F 1 HETATM 31 C C3D NDP . . . V 6 54.154 -12.157 73.818 1 52.74 ? C3D NDP 500 F 1 HETATM 32 O O3D NDP . . . V 6 52.782 -11.732 73.549 1 54.62 ? O3D NDP 500 F 1 HETATM 33 C C2D NDP . . . V 6 54.243 -13.68 74.123 1 52.78 ? C2D NDP 500 F 1 HETATM 34 O O2D NDP . . . V 6 53.136 -14.271 74.728 1 53.48 ? O2D NDP 500 F 1 HETATM 35 C C1D NDP . . . V 6 54.437 -14.216 72.588 1 52.25 ? C1D NDP 500 F 1 HETATM 36 N N1N NDP . . . V 6 55.179 -15.527 72.511 1 52.94 ? N1N NDP 500 F 1 HETATM 37 C C2N NDP . . . V 6 56.16 -15.912 73.466 1 53.95 ? C2N NDP 500 F 1 HETATM 38 C C3N NDP . . . V 6 56.849 -17.174 73.316 1 55.3 ? C3N NDP 500 F 1 HETATM 39 C C7N NDP . . . V 6 57.87 -17.585 74.303 1 56.9 ? C7N NDP 500 F 1 HETATM 40 O O7N NDP . . . V 6 57.782 -18.662 74.895 1 57.02 ? O7N NDP 500 F 1 HETATM 41 N N7N NDP . . . V 6 58.859 -16.666 74.469 1 58.14 ? N7N NDP 500 F 1 HETATM 42 C C4N NDP . . . V 6 56.559 -18.041 72.221 1 54.82 ? C4N NDP 500 F 1 HETATM 43 C C5N NDP . . . V 6 55.607 -17.664 71.297 1 54.76 ? C5N NDP 500 F 1 HETATM 44 C C6N NDP . . . V 6 54.951 -16.463 71.442 1 53.36 ? C6N NDP 500 F 1 HETATM 45 P P2B NDP . . . V 6 58.346 -2.861 64.754 1 56.86 ? P2B NDP 500 F 1 HETATM 46 O O1X NDP . . . V 6 57.393 -3.12 63.639 1 58.31 ? O1X NDP 500 F 1 HETATM 47 O O2X NDP . . . V 6 58.191 -1.538 65.355 1 55.32 ? O2X NDP 500 F 1 HETATM 48 O O3X NDP . . . V 6 59.713 -3.117 64.349 1 54.69 ? O3X NDP 500 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 48 #