data_1XLT # _model_server_result.job_id 9F3qC7rNEjx1ShGQh0BvVg _model_server_result.datetime_utc '2024-11-09 01:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xlt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 1XLT # _exptl.entry_id 1XLT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XLT _cell.length_a 95.372 _cell.length_b 171.082 _cell.length_c 203.181 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,P,Q,R,S 1 1 D,E,F,L,M,T,U,V 2 1 G,H,I,N,O,W,X,Y,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 U N N ? 5 X N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n J GLC 1 J 1 GLC A 600 SUC 3 n J FRU 2 J 2 FRU A 600 SUC 3 n K GLC 1 K 1 GLC B 600 SUC 3 n K FRU 2 K 2 FRU B 600 SUC 3 n L GLC 1 L 1 GLC D 600 SUC 3 n L FRU 2 L 2 FRU D 600 SUC 3 n M GLC 1 M 1 GLC E 600 SUC 3 n M FRU 2 M 2 FRU E 600 SUC 3 n N GLC 1 N 1 GLC G 600 SUC 3 n N FRU 2 N 2 FRU G 600 SUC 3 n O GLC 1 O 1 GLC H 600 SUC 3 n O FRU 2 O 2 FRU H 600 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 J C1 GLC . J GLC 1 1_555 J O2 FRU . J FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 sing covale ? covale2 K C1 GLC . K GLC 1 1_555 K O2 FRU . K FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing covale ? covale3 L C1 GLC . L GLC 1 1_555 L O2 FRU . L FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 sing covale ? covale4 M C1 GLC . M GLC 1 1_555 M O2 FRU . M FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 sing covale ? covale5 N C1 GLC . N GLC 1 1_555 N O2 FRU . N FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 sing covale ? covale6 O C1 GLC . O GLC 1 1_555 O O2 FRU . O FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 sing metalc ? metalc1 A O ALA 159 A ALA 159 1_555 Q NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc2 A O PRO 171 A PRO 171 1_555 Q NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 Q NA NA . A NA 601 1_555 B OD2 ASP 330 B ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc4 D O ALA 159 D ALA 159 1_555 U NA NA . D NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 D O PRO 171 D PRO 171 1_555 U NA NA . D NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 U NA NA . D NA 602 1_555 E OD2 ASP 330 E ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc7 G O ALA 159 G ALA 159 1_555 X NA NA . G NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc8 G O PRO 171 G PRO 171 1_555 X NA NA . G NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc9 X NA NA . G NA 603 1_555 H OD2 ASP 330 H ASP 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XLT _atom_sites.fract_transf_matrix[1][1] 0.010485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 4 NAD A 1 400 400 NAD NAD . Q 5 NA A 1 601 601 NA NA . R 4 NAD B 1 400 400 NAD NAD . S 6 NDP C 1 500 500 NDP NDP . T 4 NAD D 1 400 400 NAD NAD . U 5 NA D 1 602 602 NA NA . V 6 NDP F 1 500 500 NDP NDP . W 4 NAD G 1 400 400 NAD NAD . X 5 NA G 1 603 603 NA NA . Y 4 NAD H 1 400 400 NAD NAD . Z 6 NDP I 1 500 500 NDP NDP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 5 _atom_site.Cartn_x 133.23 _atom_site.Cartn_y 32.752 _atom_site.Cartn_z 72.509 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #