data_1XLZ # _model_server_result.job_id 3m09XmjGqRyjkXqAWoZKsg _model_server_result.datetime_utc '2024-11-22 14:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1XLZ # _exptl.entry_id 1XLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XLZ _cell.length_a 89.539 _cell.length_b 94.173 _cell.length_c 106.303 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C HIS 189 A HIS 319 1_555 A N CME 190 A CME 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C CME 190 A CME 320 1_555 A N ASP 191 A ASP 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C THR 63 B THR 193 1_555 B N CME 64 B CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B C CME 64 B CME 194 1_555 B N ILE 65 B ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C HIS 189 B HIS 319 1_555 B N CME 190 B CME 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 B C CME 190 B CME 320 1_555 B N ASP 191 B ASP 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A NE2 HIS 108 A HIS 238 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A NE2 HIS 144 A HIS 274 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A OD2 ASP 145 A ASP 275 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 A OD1 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 A OD2 ASP 262 A ASP 392 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc13 B NE2 HIS 108 B HIS 238 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc14 B NE2 HIS 144 B HIS 274 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc15 B OD2 ASP 145 B ASP 275 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc16 B OD1 ASP 145 B ASP 275 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc17 B OD2 ASP 262 B ASP 392 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc18 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc19 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc23 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc24 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XLZ _atom_sites.fract_transf_matrix[1][1] 0.011168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 3 MG A 1 1002 1002 MG MG . E 4 FIL A 1 1003 1 FIL LIG . F 2 ZN B 1 1001 1001 ZN ZN . G 3 MG B 1 1002 1002 MG MG . H 4 FIL B 1 1003 2 FIL LIG . I 5 HOH A 1 1004 1003 HOH HOH . I 5 HOH A 2 1005 1004 HOH HOH . I 5 HOH A 3 1006 1005 HOH HOH . I 5 HOH A 4 1007 1006 HOH HOH . I 5 HOH A 5 1008 1007 HOH HOH . I 5 HOH A 6 1009 1008 HOH HOH . I 5 HOH A 7 1010 30 HOH HOH . I 5 HOH A 8 1011 9 HOH HOH . I 5 HOH A 9 1012 4 HOH HOH . I 5 HOH A 10 1013 3 HOH HOH . I 5 HOH A 11 1014 8 HOH HOH . I 5 HOH A 12 1015 2 HOH HOH . I 5 HOH A 13 1016 12 HOH HOH . I 5 HOH A 14 1017 18 HOH HOH . I 5 HOH A 15 1018 24 HOH HOH . I 5 HOH A 16 1019 29 HOH HOH . I 5 HOH A 17 1020 1 HOH HOH . I 5 HOH A 18 1021 31 HOH HOH . I 5 HOH A 19 1022 32 HOH HOH . I 5 HOH A 20 1023 33 HOH HOH . I 5 HOH A 21 1024 34 HOH HOH . I 5 HOH A 22 1025 36 HOH HOH . I 5 HOH A 23 1026 37 HOH HOH . I 5 HOH A 24 1027 38 HOH HOH . I 5 HOH A 25 1028 39 HOH HOH . I 5 HOH A 26 1029 41 HOH HOH . I 5 HOH A 27 1030 45 HOH HOH . I 5 HOH A 28 1031 46 HOH HOH . I 5 HOH A 29 1032 47 HOH HOH . I 5 HOH A 30 1033 49 HOH HOH . I 5 HOH A 31 1034 52 HOH HOH . I 5 HOH A 32 1035 56 HOH HOH . I 5 HOH A 33 1036 58 HOH HOH . I 5 HOH A 34 1037 59 HOH HOH . I 5 HOH A 35 1038 64 HOH HOH . I 5 HOH A 36 1039 67 HOH HOH . I 5 HOH A 37 1040 68 HOH HOH . I 5 HOH A 38 1041 70 HOH HOH . I 5 HOH A 39 1042 73 HOH HOH . I 5 HOH A 40 1043 75 HOH HOH . I 5 HOH A 41 1044 81 HOH HOH . I 5 HOH A 42 1045 84 HOH HOH . I 5 HOH A 43 1046 88 HOH HOH . I 5 HOH A 44 1047 90 HOH HOH . I 5 HOH A 45 1048 92 HOH HOH . I 5 HOH A 46 1049 95 HOH HOH . I 5 HOH A 47 1050 98 HOH HOH . I 5 HOH A 48 1051 99 HOH HOH . I 5 HOH A 49 1052 100 HOH HOH . I 5 HOH A 50 1053 103 HOH HOH . I 5 HOH A 51 1054 106 HOH HOH . I 5 HOH A 52 1055 107 HOH HOH . I 5 HOH A 53 1056 109 HOH HOH . I 5 HOH A 54 1057 111 HOH HOH . I 5 HOH A 55 1058 114 HOH HOH . I 5 HOH A 56 1059 115 HOH HOH . I 5 HOH A 57 1060 116 HOH HOH . I 5 HOH A 58 1061 120 HOH HOH . I 5 HOH A 59 1062 125 HOH HOH . I 5 HOH A 60 1063 126 HOH HOH . I 5 HOH A 61 1064 127 HOH HOH . I 5 HOH A 62 1065 129 HOH HOH . I 5 HOH A 63 1066 130 HOH HOH . I 5 HOH A 64 1067 131 HOH HOH . I 5 HOH A 65 1068 133 HOH HOH . I 5 HOH A 66 1069 135 HOH HOH . I 5 HOH A 67 1070 136 HOH HOH . I 5 HOH A 68 1071 137 HOH HOH . I 5 HOH A 69 1072 138 HOH HOH . I 5 HOH A 70 1073 139 HOH HOH . I 5 HOH A 71 1074 140 HOH HOH . I 5 HOH A 72 1075 141 HOH HOH . I 5 HOH A 73 1076 142 HOH HOH . I 5 HOH A 74 1077 145 HOH HOH . I 5 HOH A 75 1078 146 HOH HOH . I 5 HOH A 76 1079 148 HOH HOH . I 5 HOH A 77 1080 149 HOH HOH . I 5 HOH A 78 1081 150 HOH HOH . I 5 HOH A 79 1082 151 HOH HOH . I 5 HOH A 80 1083 152 HOH HOH . I 5 HOH A 81 1084 154 HOH HOH . I 5 HOH A 82 1085 155 HOH HOH . I 5 HOH A 83 1086 156 HOH HOH . J 5 HOH B 1 2003 1003 HOH HOH . J 5 HOH B 2 2004 1004 HOH HOH . J 5 HOH B 3 2005 1005 HOH HOH . J 5 HOH B 4 2006 1006 HOH HOH . J 5 HOH B 5 2007 1007 HOH HOH . J 5 HOH B 6 2008 1008 HOH HOH . J 5 HOH B 7 2009 5 HOH HOH . J 5 HOH B 8 2010 6 HOH HOH . J 5 HOH B 9 2011 11 HOH HOH . J 5 HOH B 10 2012 13 HOH HOH . J 5 HOH B 11 2013 14 HOH HOH . J 5 HOH B 12 2014 15 HOH HOH . J 5 HOH B 13 2015 16 HOH HOH . J 5 HOH B 14 2016 17 HOH HOH . J 5 HOH B 15 2017 19 HOH HOH . J 5 HOH B 16 2018 20 HOH HOH . J 5 HOH B 17 2019 21 HOH HOH . J 5 HOH B 18 2020 22 HOH HOH . J 5 HOH B 19 2021 23 HOH HOH . J 5 HOH B 20 2022 25 HOH HOH . J 5 HOH B 21 2023 26 HOH HOH . J 5 HOH B 22 2024 27 HOH HOH . J 5 HOH B 23 2025 28 HOH HOH . J 5 HOH B 24 2026 35 HOH HOH . J 5 HOH B 25 2027 40 HOH HOH . J 5 HOH B 26 2028 42 HOH HOH . J 5 HOH B 27 2029 43 HOH HOH . J 5 HOH B 28 2030 44 HOH HOH . J 5 HOH B 29 2031 48 HOH HOH . J 5 HOH B 30 2032 50 HOH HOH . J 5 HOH B 31 2033 51 HOH HOH . J 5 HOH B 32 2034 53 HOH HOH . J 5 HOH B 33 2035 54 HOH HOH . J 5 HOH B 34 2036 55 HOH HOH . J 5 HOH B 35 2037 57 HOH HOH . J 5 HOH B 36 2038 60 HOH HOH . J 5 HOH B 37 2039 61 HOH HOH . J 5 HOH B 38 2040 62 HOH HOH . J 5 HOH B 39 2041 65 HOH HOH . J 5 HOH B 40 2042 69 HOH HOH . J 5 HOH B 41 2043 71 HOH HOH . J 5 HOH B 42 2044 72 HOH HOH . J 5 HOH B 43 2045 74 HOH HOH . J 5 HOH B 44 2046 76 HOH HOH . J 5 HOH B 45 2047 78 HOH HOH . J 5 HOH B 46 2048 79 HOH HOH . J 5 HOH B 47 2049 80 HOH HOH . J 5 HOH B 48 2050 83 HOH HOH . J 5 HOH B 49 2051 85 HOH HOH . J 5 HOH B 50 2052 86 HOH HOH . J 5 HOH B 51 2053 87 HOH HOH . J 5 HOH B 52 2054 89 HOH HOH . J 5 HOH B 53 2055 91 HOH HOH . J 5 HOH B 54 2056 93 HOH HOH . J 5 HOH B 55 2057 94 HOH HOH . J 5 HOH B 56 2058 96 HOH HOH . J 5 HOH B 57 2059 101 HOH HOH . J 5 HOH B 58 2060 102 HOH HOH . J 5 HOH B 59 2061 105 HOH HOH . J 5 HOH B 60 2062 118 HOH HOH . J 5 HOH B 61 2063 119 HOH HOH . J 5 HOH B 62 2064 123 HOH HOH . J 5 HOH B 63 2065 128 HOH HOH . J 5 HOH B 64 2066 132 HOH HOH . J 5 HOH B 65 2067 143 HOH HOH . J 5 HOH B 66 2068 144 HOH HOH . J 5 HOH B 67 2069 147 HOH HOH . J 5 HOH B 68 2070 153 HOH HOH . J 5 HOH B 69 2071 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.635 _atom_site.Cartn_y 4.902 _atom_site.Cartn_z -2.729 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #