data_1XM4 # _model_server_result.job_id Z6JsS2E33MIhAja04KUybQ _model_server_result.datetime_utc '2024-11-24 17:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 1XM4 # _exptl.entry_id 1XM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XM4 _cell.length_a 89.573 _cell.length_b 94.317 _cell.length_c 106.681 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C MET 301 A MET 431 1_555 A N CME 302 A CME 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 A C CME 302 A CME 432 1_555 A N ASP 303 A ASP 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C THR 63 B THR 193 1_555 B N CME 64 B CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 B C CME 64 B CME 194 1_555 B N ILE 65 B ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C HIS 189 B HIS 319 1_555 B N CME 190 B CME 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C CME 190 B CME 320 1_555 B N ASP 191 B ASP 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A NE2 HIS 108 A HIS 238 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A NE2 HIS 144 A HIS 274 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 A OD2 ASP 145 A ASP 275 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc4 A OD1 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 A OD2 ASP 262 A ASP 392 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc6 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc8 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc13 B NE2 HIS 108 B HIS 238 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc14 B NE2 HIS 144 B HIS 274 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc15 B OD1 ASP 145 B ASP 275 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc16 B OD2 ASP 145 B ASP 275 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc17 B OD2 ASP 262 B ASP 392 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc18 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc19 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc20 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc23 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc24 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XM4 _atom_sites.fract_transf_matrix[1][1] 0.011164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1001 ZN ZN . D 4 MG A 1 1002 1002 MG MG . E 5 PIL A 1 1003 1 PIL LIG . F 3 ZN B 1 1001 1001 ZN ZN . G 4 MG B 1 1002 1002 MG MG . H 5 PIL B 1 1003 2 PIL LIG . I 6 HOH A 1 1004 1003 HOH HOH . I 6 HOH A 2 1005 1004 HOH HOH . I 6 HOH A 3 1006 1005 HOH HOH . I 6 HOH A 4 1007 1006 HOH HOH . I 6 HOH A 5 1008 1007 HOH HOH . I 6 HOH A 6 1009 1008 HOH HOH . I 6 HOH A 7 1010 5 HOH HOH . I 6 HOH A 8 1011 3 HOH HOH . I 6 HOH A 9 1012 4 HOH HOH . I 6 HOH A 10 1013 2 HOH HOH . I 6 HOH A 11 1014 1 HOH HOH . I 6 HOH A 12 1015 7 HOH HOH . I 6 HOH A 13 1016 8 HOH HOH . I 6 HOH A 14 1017 9 HOH HOH . I 6 HOH A 15 1018 14 HOH HOH . I 6 HOH A 16 1019 15 HOH HOH . I 6 HOH A 17 1020 20 HOH HOH . I 6 HOH A 18 1021 21 HOH HOH . I 6 HOH A 19 1022 27 HOH HOH . I 6 HOH A 20 1023 29 HOH HOH . I 6 HOH A 21 1024 30 HOH HOH . I 6 HOH A 22 1025 31 HOH HOH . I 6 HOH A 23 1026 34 HOH HOH . I 6 HOH A 24 1027 35 HOH HOH . I 6 HOH A 25 1028 37 HOH HOH . I 6 HOH A 26 1029 38 HOH HOH . I 6 HOH A 27 1030 41 HOH HOH . I 6 HOH A 28 1031 43 HOH HOH . I 6 HOH A 29 1032 45 HOH HOH . I 6 HOH A 30 1033 49 HOH HOH . I 6 HOH A 31 1034 50 HOH HOH . I 6 HOH A 32 1035 51 HOH HOH . I 6 HOH A 33 1036 54 HOH HOH . I 6 HOH A 34 1037 55 HOH HOH . I 6 HOH A 35 1038 58 HOH HOH . I 6 HOH A 36 1039 59 HOH HOH . I 6 HOH A 37 1040 60 HOH HOH . I 6 HOH A 38 1041 62 HOH HOH . I 6 HOH A 39 1042 63 HOH HOH . I 6 HOH A 40 1043 65 HOH HOH . I 6 HOH A 41 1044 68 HOH HOH . I 6 HOH A 42 1045 70 HOH HOH . I 6 HOH A 43 1046 78 HOH HOH . I 6 HOH A 44 1047 80 HOH HOH . I 6 HOH A 45 1048 81 HOH HOH . I 6 HOH A 46 1049 83 HOH HOH . I 6 HOH A 47 1050 85 HOH HOH . I 6 HOH A 48 1051 86 HOH HOH . I 6 HOH A 49 1052 87 HOH HOH . I 6 HOH A 50 1053 91 HOH HOH . I 6 HOH A 51 1054 93 HOH HOH . I 6 HOH A 52 1055 94 HOH HOH . I 6 HOH A 53 1056 95 HOH HOH . I 6 HOH A 54 1057 98 HOH HOH . I 6 HOH A 55 1058 99 HOH HOH . I 6 HOH A 56 1059 100 HOH HOH . I 6 HOH A 57 1060 101 HOH HOH . I 6 HOH A 58 1061 102 HOH HOH . I 6 HOH A 59 1062 103 HOH HOH . I 6 HOH A 60 1063 104 HOH HOH . I 6 HOH A 61 1064 105 HOH HOH . I 6 HOH A 62 1065 107 HOH HOH . I 6 HOH A 63 1066 108 HOH HOH . I 6 HOH A 64 1067 112 HOH HOH . I 6 HOH A 65 1068 113 HOH HOH . I 6 HOH A 66 1069 116 HOH HOH . J 6 HOH B 1 6 6 HOH HOH . J 6 HOH B 2 10 10 HOH HOH . J 6 HOH B 3 11 11 HOH HOH . J 6 HOH B 4 12 12 HOH HOH . J 6 HOH B 5 13 13 HOH HOH . J 6 HOH B 6 16 16 HOH HOH . J 6 HOH B 7 17 17 HOH HOH . J 6 HOH B 8 18 18 HOH HOH . J 6 HOH B 9 19 19 HOH HOH . J 6 HOH B 10 22 22 HOH HOH . J 6 HOH B 11 23 23 HOH HOH . J 6 HOH B 12 24 24 HOH HOH . J 6 HOH B 13 25 25 HOH HOH . J 6 HOH B 14 26 26 HOH HOH . J 6 HOH B 15 28 28 HOH HOH . J 6 HOH B 16 32 32 HOH HOH . J 6 HOH B 17 33 33 HOH HOH . J 6 HOH B 18 36 36 HOH HOH . J 6 HOH B 19 39 39 HOH HOH . J 6 HOH B 20 42 42 HOH HOH . J 6 HOH B 21 47 47 HOH HOH . J 6 HOH B 22 48 48 HOH HOH . J 6 HOH B 23 53 53 HOH HOH . J 6 HOH B 24 56 56 HOH HOH . J 6 HOH B 25 66 66 HOH HOH . J 6 HOH B 26 67 67 HOH HOH . J 6 HOH B 27 69 69 HOH HOH . J 6 HOH B 28 74 74 HOH HOH . J 6 HOH B 29 76 76 HOH HOH . J 6 HOH B 30 77 77 HOH HOH . J 6 HOH B 31 79 79 HOH HOH . J 6 HOH B 32 82 82 HOH HOH . J 6 HOH B 33 84 84 HOH HOH . J 6 HOH B 34 88 88 HOH HOH . J 6 HOH B 35 89 89 HOH HOH . J 6 HOH B 36 90 90 HOH HOH . J 6 HOH B 37 92 92 HOH HOH . J 6 HOH B 38 96 96 HOH HOH . J 6 HOH B 39 97 97 HOH HOH . J 6 HOH B 40 106 106 HOH HOH . J 6 HOH B 41 109 109 HOH HOH . J 6 HOH B 42 110 110 HOH HOH . J 6 HOH B 43 111 111 HOH HOH . J 6 HOH B 44 114 114 HOH HOH . J 6 HOH B 45 115 115 HOH HOH . J 6 HOH B 46 118 118 HOH HOH . J 6 HOH B 47 119 119 HOH HOH . J 6 HOH B 48 120 120 HOH HOH . J 6 HOH B 49 121 121 HOH HOH . J 6 HOH B 50 2003 1003 HOH HOH . J 6 HOH B 51 2004 1004 HOH HOH . J 6 HOH B 52 2005 1005 HOH HOH . J 6 HOH B 53 2006 1006 HOH HOH . J 6 HOH B 54 2007 1007 HOH HOH . J 6 HOH B 55 2008 1008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 52.751 _atom_site.Cartn_y 4.442 _atom_site.Cartn_z 47.911 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #