data_1XMJ
#
_model_server_result.job_id            0GXTqmnAX-PqahfgvLAxJA 
_model_server_result.datetime_utc      '2024-11-24 14:37:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    1XMJ 
#
_exptl.entry_id    1XMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XMJ 
_cell.length_a            59.793 
_cell.length_b            59.793 
_cell.length_c            144.398 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XMJ 
_symmetry.cell_setting             tetragonal 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2G ATP . A ATP 1 1_555 B MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc2 C O2B ATP . A ATP 1 1_555 B MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc3 B MG MG . A MG 2 1_555 D O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc4 B MG MG . A MG 2 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc5 B MG MG . A MG 2 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1XMJ 
_atom_sites.fract_transf_matrix[1][1]    0.016724 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006925 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2 2 MG MG . 
C 3 ATP A 1 1 1 ATP ATP . 
D 4 HOH A 1 3 3 HOH HOH . 
D 4 HOH A 2 4 4 HOH HOH . 
D 4 HOH A 3 5 5 HOH HOH . 
D 4 HOH A 4 6 6 HOH HOH . 
D 4 HOH A 5 7 7 HOH HOH . 
D 4 HOH A 6 8 8 HOH HOH . 
D 4 HOH A 7 9 9 HOH HOH . 
D 4 HOH A 8 10 10 HOH HOH . 
D 4 HOH A 9 11 11 HOH HOH . 
D 4 HOH A 10 12 12 HOH HOH . 
D 4 HOH A 11 13 13 HOH HOH . 
D 4 HOH A 12 14 14 HOH HOH . 
D 4 HOH A 13 15 15 HOH HOH . 
D 4 HOH A 14 16 16 HOH HOH . 
D 4 HOH A 15 17 17 HOH HOH . 
D 4 HOH A 16 18 18 HOH HOH . 
D 4 HOH A 17 19 19 HOH HOH . 
D 4 HOH A 18 20 20 HOH HOH . 
D 4 HOH A 19 21 21 HOH HOH . 
D 4 HOH A 20 22 22 HOH HOH . 
D 4 HOH A 21 23 23 HOH HOH . 
D 4 HOH A 22 24 24 HOH HOH . 
D 4 HOH A 23 25 25 HOH HOH . 
D 4 HOH A 24 26 26 HOH HOH . 
D 4 HOH A 25 27 27 HOH HOH . 
D 4 HOH A 26 28 28 HOH HOH . 
D 4 HOH A 27 29 29 HOH HOH . 
D 4 HOH A 28 30 30 HOH HOH . 
D 4 HOH A 29 31 31 HOH HOH . 
D 4 HOH A 30 32 32 HOH HOH . 
D 4 HOH A 31 33 33 HOH HOH . 
D 4 HOH A 32 34 34 HOH HOH . 
D 4 HOH A 33 35 35 HOH HOH . 
D 4 HOH A 34 36 36 HOH HOH . 
D 4 HOH A 35 37 37 HOH HOH . 
D 4 HOH A 36 38 38 HOH HOH . 
D 4 HOH A 37 39 39 HOH HOH . 
D 4 HOH A 38 40 40 HOH HOH . 
D 4 HOH A 39 41 41 HOH HOH . 
D 4 HOH A 40 42 42 HOH HOH . 
D 4 HOH A 41 43 43 HOH HOH . 
D 4 HOH A 42 44 44 HOH HOH . 
D 4 HOH A 43 45 45 HOH HOH . 
D 4 HOH A 44 46 46 HOH HOH . 
D 4 HOH A 45 47 47 HOH HOH . 
D 4 HOH A 46 48 48 HOH HOH . 
D 4 HOH A 47 49 49 HOH HOH . 
D 4 HOH A 48 50 50 HOH HOH . 
D 4 HOH A 49 51 51 HOH HOH . 
D 4 HOH A 50 52 52 HOH HOH . 
D 4 HOH A 51 53 53 HOH HOH . 
D 4 HOH A 52 54 54 HOH HOH . 
D 4 HOH A 53 55 55 HOH HOH . 
D 4 HOH A 54 56 56 HOH HOH . 
D 4 HOH A 55 57 57 HOH HOH . 
D 4 HOH A 56 58 58 HOH HOH . 
D 4 HOH A 57 59 59 HOH HOH . 
D 4 HOH A 58 60 60 HOH HOH . 
D 4 HOH A 59 61 61 HOH HOH . 
D 4 HOH A 60 62 62 HOH HOH . 
D 4 HOH A 61 63 63 HOH HOH . 
D 4 HOH A 62 64 64 HOH HOH . 
D 4 HOH A 63 65 65 HOH HOH . 
D 4 HOH A 64 66 66 HOH HOH . 
D 4 HOH A 65 67 67 HOH HOH . 
D 4 HOH A 66 68 68 HOH HOH . 
D 4 HOH A 67 69 69 HOH HOH . 
D 4 HOH A 68 70 70 HOH HOH . 
D 4 HOH A 69 71 71 HOH HOH . 
D 4 HOH A 70 72 72 HOH HOH . 
D 4 HOH A 71 73 73 HOH HOH . 
D 4 HOH A 72 74 74 HOH HOH . 
D 4 HOH A 73 75 75 HOH HOH . 
D 4 HOH A 74 76 76 HOH HOH . 
D 4 HOH A 75 77 77 HOH HOH . 
D 4 HOH A 76 78 78 HOH HOH . 
D 4 HOH A 77 79 79 HOH HOH . 
D 4 HOH A 78 80 80 HOH HOH . 
D 4 HOH A 79 81 81 HOH HOH . 
D 4 HOH A 80 82 82 HOH HOH . 
D 4 HOH A 81 83 83 HOH HOH . 
D 4 HOH A 82 84 84 HOH HOH . 
D 4 HOH A 83 85 85 HOH HOH . 
D 4 HOH A 84 86 86 HOH HOH . 
D 4 HOH A 85 87 87 HOH HOH . 
D 4 HOH A 86 88 88 HOH HOH . 
D 4 HOH A 87 89 89 HOH HOH . 
D 4 HOH A 88 90 90 HOH HOH . 
D 4 HOH A 89 91 91 HOH HOH . 
D 4 HOH A 90 92 92 HOH HOH . 
D 4 HOH A 91 93 93 HOH HOH . 
D 4 HOH A 92 94 94 HOH HOH . 
D 4 HOH A 93 95 95 HOH HOH . 
D 4 HOH A 94 96 96 HOH HOH . 
D 4 HOH A 95 97 97 HOH HOH . 
D 4 HOH A 96 98 98 HOH HOH . 
D 4 HOH A 97 99 99 HOH HOH . 
D 4 HOH A 98 100 100 HOH HOH . 
D 4 HOH A 99 101 101 HOH HOH . 
D 4 HOH A 100 102 102 HOH HOH . 
D 4 HOH A 101 103 103 HOH HOH . 
D 4 HOH A 102 104 104 HOH HOH . 
D 4 HOH A 103 105 105 HOH HOH . 
D 4 HOH A 104 106 106 HOH HOH . 
D 4 HOH A 105 107 107 HOH HOH . 
D 4 HOH A 106 108 108 HOH HOH . 
D 4 HOH A 107 109 109 HOH HOH . 
D 4 HOH A 108 110 110 HOH HOH . 
D 4 HOH A 109 111 111 HOH HOH . 
D 4 HOH A 110 112 112 HOH HOH . 
D 4 HOH A 111 113 113 HOH HOH . 
D 4 HOH A 112 114 114 HOH HOH . 
D 4 HOH A 113 115 115 HOH HOH . 
D 4 HOH A 114 116 116 HOH HOH . 
D 4 HOH A 115 117 117 HOH HOH . 
D 4 HOH A 116 118 118 HOH HOH . 
D 4 HOH A 117 119 119 HOH HOH . 
D 4 HOH A 118 120 120 HOH HOH . 
D 4 HOH A 119 121 121 HOH HOH . 
D 4 HOH A 120 122 122 HOH HOH . 
D 4 HOH A 121 123 123 HOH HOH . 
D 4 HOH A 122 124 124 HOH HOH . 
D 4 HOH A 123 125 125 HOH HOH . 
D 4 HOH A 124 126 126 HOH HOH . 
D 4 HOH A 125 127 127 HOH HOH . 
D 4 HOH A 126 128 128 HOH HOH . 
D 4 HOH A 127 129 129 HOH HOH . 
D 4 HOH A 128 130 130 HOH HOH . 
D 4 HOH A 129 131 131 HOH HOH . 
D 4 HOH A 130 132 132 HOH HOH . 
D 4 HOH A 131 133 133 HOH HOH . 
D 4 HOH A 132 134 134 HOH HOH . 
D 4 HOH A 133 135 135 HOH HOH . 
D 4 HOH A 134 136 136 HOH HOH . 
D 4 HOH A 135 137 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 55.011 34.226 47.921 1 34.25 ? PG ATP 1 A 1 
HETATM 2 O O1G ATP . . . C 3 55.945 34.26 46.776 1 44.24 ? O1G ATP 1 A 1 
HETATM 3 O O2G ATP . . . C 3 55.114 32.872 48.647 1 38.87 ? O2G ATP 1 A 1 
HETATM 4 O O3G ATP . . . C 3 55.338 35.39 48.868 1 46.21 ? O3G ATP 1 A 1 
HETATM 5 P PB ATP . . . C 3 52.944 33.916 46.007 1 26.06 ? PB ATP 1 A 1 
HETATM 6 O O1B ATP . . . C 3 53.35 34.754 44.855 1 26.02 ? O1B ATP 1 A 1 
HETATM 7 O O2B ATP . . . C 3 53.233 32.429 45.766 1 25.09 ? O2B ATP 1 A 1 
HETATM 8 O O3B ATP . . . C 3 53.513 34.461 47.404 1 34.28 ? O3B ATP 1 A 1 
HETATM 9 P PA ATP . . . C 3 50.275 33.105 46.709 1 22.74 ? PA ATP 1 A 1 
HETATM 10 O O1A ATP . . . C 3 50.773 32.082 47.648 1 33.57 ? O1A ATP 1 A 1 
HETATM 11 O O2A ATP . . . C 3 49.633 32.508 45.45 1 24.23 ? O2A ATP 1 A 1 
HETATM 12 O O3A ATP . . . C 3 51.384 34.194 46.278 1 34.55 ? O3A ATP 1 A 1 
HETATM 13 O O5' ATP . . . C 3 49.216 34.052 47.478 1 31.99 ? O5' ATP 1 A 1 
HETATM 14 C C5' ATP . . . C 3 48.475 35.025 46.765 1 32.94 ? C5' ATP 1 A 1 
HETATM 15 C C4' ATP . . . C 3 47.261 35.445 47.585 1 45.68 ? C4' ATP 1 A 1 
HETATM 16 O O4' ATP . . . C 3 46.345 34.369 47.656 1 46.34 ? O4' ATP 1 A 1 
HETATM 17 C C3' ATP . . . C 3 47.672 35.802 49.006 1 52.32 ? C3' ATP 1 A 1 
HETATM 18 O O3' ATP . . . C 3 47.172 37.073 49.352 1 56.07 ? O3' ATP 1 A 1 
HETATM 19 C C2' ATP . . . C 3 47.102 34.696 49.879 1 48.02 ? C2' ATP 1 A 1 
HETATM 20 O O2' ATP . . . C 3 46.527 35.222 51.05 1 40.71 ? O2' ATP 1 A 1 
HETATM 21 C C1' ATP . . . C 3 46.068 34.003 48.998 1 49.2 ? C1' ATP 1 A 1 
HETATM 22 N N9 ATP . . . C 3 46.09 32.529 49.132 1 54.76 ? N9 ATP 1 A 1 
HETATM 23 C C8 ATP . . . C 3 47.129 31.689 48.817 1 58.64 ? C8 ATP 1 A 1 
HETATM 24 N N7 ATP . . . C 3 46.753 30.412 49.067 1 58.57 ? N7 ATP 1 A 1 
HETATM 25 C C5 ATP . . . C 3 45.483 30.416 49.533 1 58.12 ? C5 ATP 1 A 1 
HETATM 26 C C6 ATP . . . C 3 44.621 29.395 49.938 1 57.96 ? C6 ATP 1 A 1 
HETATM 27 N N6 ATP . . . C 3 45.002 28.124 49.872 1 60.08 ? N6 ATP 1 A 1 
HETATM 28 N N1 ATP . . . C 3 43.348 29.7 50.379 1 58.91 ? N1 ATP 1 A 1 
HETATM 29 C C2 ATP . . . C 3 42.935 31.02 50.415 1 61.54 ? C2 ATP 1 A 1 
HETATM 30 N N3 ATP . . . C 3 43.791 32.029 50.009 1 58.58 ? N3 ATP 1 A 1 
HETATM 31 C C4 ATP . . . C 3 45.05 31.74 49.575 1 59.74 ? C4 ATP 1 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#