data_1XMY # _model_server_result.job_id pXK-0L0x6oVPN1m72dPSxA _model_server_result.datetime_utc '2024-11-24 18:06:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 1XMY # _exptl.entry_id 1XMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.343 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ROLIPRAM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XMY _cell.length_a 89.67 _cell.length_b 94.633 _cell.length_c 106.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C HIS 189 A HIS 319 1_555 A N CME 190 A CME 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 A C CME 190 A CME 320 1_555 A N ASP 191 A ASP 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C THR 63 B THR 193 1_555 B N CME 64 B CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 B C CME 64 B CME 194 1_555 B N ILE 65 B ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 B C MET 301 B MET 431 1_555 B N CME 302 B CME 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 B C CME 302 B CME 432 1_555 B N ASP 303 B ASP 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 108 A HIS 238 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 A NE2 HIS 144 A HIS 274 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A OD2 ASP 145 A ASP 275 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 A OD2 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc5 A OD1 ASP 145 A ASP 275 1_555 D MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc6 A OD2 ASP 262 A ASP 392 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc7 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc8 C ZN ZN . A ZN 1001 1_555 I O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc10 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc12 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc13 D MG MG . A MG 1002 1_555 I O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc14 B NE2 HIS 108 B HIS 238 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc15 B NE2 HIS 144 B HIS 274 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc16 B OD2 ASP 145 B ASP 275 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc17 B OD1 ASP 145 B ASP 275 1_555 G MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc18 B OD2 ASP 262 B ASP 392 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc19 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc20 F ZN ZN . B ZN 1001 1_555 J O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc21 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc22 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc23 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc24 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc25 G MG MG . B MG 1002 1_555 J O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C16 H21 N O3' _chem_comp.formula_weight 275.343 _chem_comp.id ROL _chem_comp.mon_nstd_flag . _chem_comp.name ROLIPRAM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4R)-[3-(CYCLOPENTYLOXY)-4-METHOXYPHENYL]-2-PYRROLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 ROL doub 298 n y C5 C10 ROL sing 299 n y C5 C3 ROL sing 300 n n C6 C7 ROL sing 301 n y C6 H61 ROL sing 302 n n C7 C8 ROL doub 303 n y C7 O3 ROL sing 304 n n C8 C9 ROL sing 305 n y C8 O2 ROL sing 306 n n C9 C10 ROL doub 307 n y C9 H91 ROL sing 308 n n C10 H101 ROL sing 309 n n C3 C2 ROL sing 310 n n C3 C4 ROL sing 311 n n C3 H31 ROL sing 312 n n C2 C1 ROL sing 313 n n C2 H21 ROL sing 314 n n C2 H22 ROL sing 315 n n C1 O1 ROL doub 316 n n C1 N1 ROL sing 317 n n N1 C4 ROL sing 318 n n N1 H1 ROL sing 319 n n C4 H41 ROL sing 320 n n C4 H42 ROL sing 321 n n O3 C11 ROL sing 322 n n C11 C15 ROL sing 323 n n C11 C12 ROL sing 324 n n C11 H111 ROL sing 325 n n C15 C14 ROL sing 326 n n C15 H151 ROL sing 327 n n C15 H152 ROL sing 328 n n C14 C13 ROL sing 329 n n C14 H141 ROL sing 330 n n C14 H142 ROL sing 331 n n C13 C12 ROL sing 332 n n C13 H131 ROL sing 333 n n C13 H132 ROL sing 334 n n C12 H121 ROL sing 335 n n C12 H122 ROL sing 336 n n O2 C16 ROL sing 337 n n C16 H161 ROL sing 338 n n C16 H162 ROL sing 339 n n C16 H163 ROL sing 340 n n # _atom_sites.entry_id 1XMY _atom_sites.fract_transf_matrix[1][1] 0.011152 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1001 1001 ZN ZN . D 4 MG A 1 1002 1002 MG MG . E 5 ROL A 1 101 1 ROL LIG . F 3 ZN B 1 1001 1001 ZN ZN . G 4 MG B 1 1002 1002 MG MG . H 5 ROL B 1 102 2 ROL LIG . I 6 HOH A 1 1 1 HOH HOH . I 6 HOH A 2 3 3 HOH HOH . I 6 HOH A 3 4 4 HOH HOH . I 6 HOH A 4 5 5 HOH HOH . I 6 HOH A 5 7 7 HOH HOH . I 6 HOH A 6 9 9 HOH HOH . I 6 HOH A 7 11 11 HOH HOH . I 6 HOH A 8 13 13 HOH HOH . I 6 HOH A 9 17 17 HOH HOH . I 6 HOH A 10 20 20 HOH HOH . I 6 HOH A 11 21 21 HOH HOH . I 6 HOH A 12 27 27 HOH HOH . I 6 HOH A 13 28 28 HOH HOH . I 6 HOH A 14 29 29 HOH HOH . I 6 HOH A 15 34 34 HOH HOH . I 6 HOH A 16 36 36 HOH HOH . I 6 HOH A 17 39 39 HOH HOH . I 6 HOH A 18 44 44 HOH HOH . I 6 HOH A 19 45 45 HOH HOH . I 6 HOH A 20 47 47 HOH HOH . I 6 HOH A 21 48 48 HOH HOH . I 6 HOH A 22 49 49 HOH HOH . I 6 HOH A 23 1003 1003 HOH HOH . I 6 HOH A 24 1004 1004 HOH HOH . I 6 HOH A 25 1005 1005 HOH HOH . I 6 HOH A 26 1006 1006 HOH HOH . I 6 HOH A 27 1007 1007 HOH HOH . I 6 HOH A 28 1008 1008 HOH HOH . J 6 HOH B 1 2 2 HOH HOH . J 6 HOH B 2 6 6 HOH HOH . J 6 HOH B 3 8 8 HOH HOH . J 6 HOH B 4 10 10 HOH HOH . J 6 HOH B 5 12 12 HOH HOH . J 6 HOH B 6 14 14 HOH HOH . J 6 HOH B 7 15 15 HOH HOH . J 6 HOH B 8 16 16 HOH HOH . J 6 HOH B 9 18 18 HOH HOH . J 6 HOH B 10 19 19 HOH HOH . J 6 HOH B 11 22 22 HOH HOH . J 6 HOH B 12 23 23 HOH HOH . J 6 HOH B 13 24 24 HOH HOH . J 6 HOH B 14 25 25 HOH HOH . J 6 HOH B 15 26 26 HOH HOH . J 6 HOH B 16 30 30 HOH HOH . J 6 HOH B 17 31 31 HOH HOH . J 6 HOH B 18 32 32 HOH HOH . J 6 HOH B 19 33 33 HOH HOH . J 6 HOH B 20 35 35 HOH HOH . J 6 HOH B 21 37 37 HOH HOH . J 6 HOH B 22 38 38 HOH HOH . J 6 HOH B 23 40 40 HOH HOH . J 6 HOH B 24 41 41 HOH HOH . J 6 HOH B 25 42 42 HOH HOH . J 6 HOH B 26 43 43 HOH HOH . J 6 HOH B 27 46 46 HOH HOH . J 6 HOH B 28 2003 1003 HOH HOH . J 6 HOH B 29 2004 1004 HOH HOH . J 6 HOH B 30 2005 1005 HOH HOH . J 6 HOH B 31 2006 1006 HOH HOH . J 6 HOH B 32 2007 1007 HOH HOH . J 6 HOH B 33 2008 1008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 ROL . . . E 5 42.769 1.921 61.693 1 43.74 ? C5 ROL 101 A 1 HETATM 2 C C6 ROL . . . E 5 42.869 1.658 63.071 1 43.17 ? C6 ROL 101 A 1 HETATM 3 C C7 ROL . . . E 5 44.119 1.474 63.714 1 46.12 ? C7 ROL 101 A 1 HETATM 4 C C8 ROL . . . E 5 45.288 1.511 62.946 1 45.27 ? C8 ROL 101 A 1 HETATM 5 C C9 ROL . . . E 5 45.183 1.744 61.578 1 45.69 ? C9 ROL 101 A 1 HETATM 6 C C10 ROL . . . E 5 43.952 1.937 60.967 1 45.63 ? C10 ROL 101 A 1 HETATM 7 C C3 ROL . . . E 5 41.473 2.1 60.826 1 42.96 ? C3 ROL 101 A 1 HETATM 8 C C2 ROL . . . E 5 40.479 1.097 61.404 1 40.54 ? C2 ROL 101 A 1 HETATM 9 C C1 ROL . . . E 5 39.757 2.03 62.293 1 44.55 ? C1 ROL 101 A 1 HETATM 10 O O1 ROL . . . E 5 38.961 1.646 63.123 1 53.42 ? O1 ROL 101 A 1 HETATM 11 N N1 ROL . . . E 5 40.164 3.295 62.095 1 43.72 ? N1 ROL 101 A 1 HETATM 12 C C4 ROL . . . E 5 40.923 3.504 60.893 1 40.14 ? C4 ROL 101 A 1 HETATM 13 O O3 ROL . . . E 5 44.279 1.238 65.104 1 46.44 ? O3 ROL 101 A 1 HETATM 14 C C11 ROL . . . E 5 43.113 1.313 65.919 1 43.9 ? C11 ROL 101 A 1 HETATM 15 C C15 ROL . . . E 5 42.589 -0.059 66.355 1 46.36 ? C15 ROL 101 A 1 HETATM 16 C C14 ROL . . . E 5 42.617 0.089 67.9 1 46 ? C14 ROL 101 A 1 HETATM 17 C C13 ROL . . . E 5 43.976 0.72 68.166 1 42.35 ? C13 ROL 101 A 1 HETATM 18 C C12 ROL . . . E 5 43.916 1.862 67.135 1 44.89 ? C12 ROL 101 A 1 HETATM 19 O O2 ROL . . . E 5 46.562 1.325 63.518 1 46.59 ? O2 ROL 101 A 1 HETATM 20 C C16 ROL . . . E 5 47.759 1.995 63.026 1 43.71 ? C16 ROL 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #