data_1XNN # _model_server_result.job_id RZ9Ds6zdBAQDzdIBUxeHsw _model_server_result.datetime_utc '2025-03-05 02:55:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 1XNN # _exptl.entry_id 1XNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.368 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description REL-(3AR,4S,7R,7AS)-3A,4,7,7A-TETRAHYDRO-2-(4-NITRO-1-NAPHTHALENYL)-4,7-ETHANO-1H-ISOINDOLE-1,3(2H)-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XNN _cell.length_a 54.87 _cell.length_b 65.94 _cell.length_c 70.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 N2 O4' _chem_comp.formula_weight 350.368 _chem_comp.id HYQ _chem_comp.mon_nstd_flag . _chem_comp.name REL-(3AR,4S,7R,7AS)-3A,4,7,7A-TETRAHYDRO-2-(4-NITRO-1-NAPHTHALENYL)-4,7-ETHANO-1H-ISOINDOLE-1,3(2H)-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3AALPHA,4ALPHA,7ALPHA,7AALPHA)- 3A,4,7,7A-TETRAHYDRO-2-(4-NITRO-1-NAPHTHALENYL)-4,7-ETHANO-1H-ISOINDOLE-1,3(2H)-DIONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 HYQ sing 152 n n C1 C2 HYQ sing 153 n n C1 C3 HYQ sing 154 n n C1 H1 HYQ sing 155 n n C4 O10 HYQ doub 156 n n C4 N9 HYQ sing 157 n n N9 C14 HYQ sing 158 n n N9 C6 HYQ sing 159 n n C14 C16 HYQ doub 160 n y C14 C15 HYQ sing 161 n y C16 C19 HYQ sing 162 n y C16 H16 HYQ sing 163 n n C19 C20 HYQ doub 164 n y C19 H19 HYQ sing 165 n n C20 N23 HYQ sing 166 n n C20 C17 HYQ sing 167 n y N23 O26 HYQ sing 168 n n N23 O25 HYQ doub 169 n n C17 C21 HYQ doub 170 n y C17 C15 HYQ sing 171 n y C21 C24 HYQ sing 172 n y C21 H21 HYQ sing 173 n n C24 C22 HYQ doub 174 n y C24 H24 HYQ sing 175 n n C22 C18 HYQ sing 176 n y C22 H22 HYQ sing 177 n n C18 C15 HYQ doub 178 n y C18 H18 HYQ sing 179 n n C6 O13 HYQ doub 180 n n C6 C2 HYQ sing 181 n n C2 C5 HYQ sing 182 n n C2 H2 HYQ sing 183 n n C5 C12 HYQ sing 184 n n C5 C11 HYQ sing 185 n n C5 H5 HYQ sing 186 n n C12 C8 HYQ sing 187 n n C12 H121 HYQ sing 188 n n C12 H122 HYQ sing 189 n n C8 C3 HYQ sing 190 n n C8 H81 HYQ sing 191 n n C8 H82 HYQ sing 192 n n C3 C7 HYQ sing 193 n n C3 H3 HYQ sing 194 n n C7 C11 HYQ sing 195 n n C7 H71 HYQ sing 196 n n C7 H72 HYQ sing 197 n n C11 H111 HYQ sing 198 n n C11 H112 HYQ sing 199 n n # _atom_sites.entry_id 1XNN _atom_sites.fract_transf_matrix[1][1] 0.018225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HYQ A 1 101 1 HYQ LIG . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HYQ . . . B 2 29.931 0.808 4.339 1 28.1 ? C1 HYQ 101 A 1 HETATM 2 C C4 HYQ . . . B 2 29.206 2.066 4.692 1 27.1 ? C4 HYQ 101 A 1 HETATM 3 O O10 HYQ . . . B 2 29.577 2.77 5.627 1 28.93 ? O10 HYQ 101 A 1 HETATM 4 N N9 HYQ . . . B 2 28.164 2.256 3.853 1 27.17 ? N9 HYQ 101 A 1 HETATM 5 C C14 HYQ . . . B 2 27.414 3.394 3.812 1 29.1 ? C14 HYQ 101 A 1 HETATM 6 C C16 HYQ . . . B 2 28.165 4.614 3.482 1 28.11 ? C16 HYQ 101 A 1 HETATM 7 C C19 HYQ . . . B 2 27.481 5.88 3.526 1 32.89 ? C19 HYQ 101 A 1 HETATM 8 C C20 HYQ . . . B 2 26.05 5.911 3.829 1 33.73 ? C20 HYQ 101 A 1 HETATM 9 N N23 HYQ . . . B 2 25.479 7.13 3.778 1 38.28 ? N23 HYQ 101 A 1 HETATM 10 O O26 HYQ . . . B 2 24.571 7.4 2.822 1 45.33 ? O26 HYQ 101 A 1 HETATM 11 O O25 HYQ . . . B 2 25.904 8.195 4.533 1 45.44 ? O25 HYQ 101 A 1 HETATM 12 C C17 HYQ . . . B 2 25.243 4.733 4.097 1 29.85 ? C17 HYQ 101 A 1 HETATM 13 C C21 HYQ . . . B 2 23.797 4.785 4.327 1 30.41 ? C21 HYQ 101 A 1 HETATM 14 C C24 HYQ . . . B 2 23.04 3.544 4.561 1 28.63 ? C24 HYQ 101 A 1 HETATM 15 C C22 HYQ . . . B 2 23.724 2.241 4.581 1 29.13 ? C22 HYQ 101 A 1 HETATM 16 C C18 HYQ . . . B 2 25.187 2.164 4.373 1 29.34 ? C18 HYQ 101 A 1 HETATM 17 C C15 HYQ . . . B 2 25.966 3.38 4.104 1 28.89 ? C15 HYQ 101 A 1 HETATM 18 C C6 HYQ . . . B 2 28.035 1.27 2.951 1 28.18 ? C6 HYQ 101 A 1 HETATM 19 O O13 HYQ . . . B 2 27.155 1.116 2.108 1 27.49 ? O13 HYQ 101 A 1 HETATM 20 C C2 HYQ . . . B 2 29.17 0.295 3.08 1 28.4 ? C2 HYQ 101 A 1 HETATM 21 C C5 HYQ . . . B 2 28.621 -1.135 3.314 1 29.97 ? C5 HYQ 101 A 1 HETATM 22 C C12 HYQ . . . B 2 27.726 -1.142 4.565 1 27.86 ? C12 HYQ 101 A 1 HETATM 23 C C8 HYQ . . . B 2 28.473 -0.65 5.797 1 29.52 ? C8 HYQ 101 A 1 HETATM 24 C C3 HYQ . . . B 2 29.918 -0.245 5.472 1 28.02 ? C3 HYQ 101 A 1 HETATM 25 C C7 HYQ . . . B 2 30.556 -1.523 4.909 1 27.6 ? C7 HYQ 101 A 1 HETATM 26 C C11 HYQ . . . B 2 29.801 -2.045 3.686 1 27.38 ? C11 HYQ 101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #