data_1XNZ # _model_server_result.job_id es51XzEvUvHSs30yKvqlcA _model_server_result.datetime_utc '2024-11-23 00:10:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":266}' # _entry.id 1XNZ # _exptl.entry_id 1XNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.8 _cell.angle_gamma 90 _cell.entry_id 1XNZ _cell.length_a 37.6 _cell.length_b 60.3 _cell.length_c 49.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 74 A ASN 74 1_555 D NA NA . A NA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A O VAL 76 A VAL 76 1_555 D NA NA . A NA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OD2 ASP 97 A ASP 97 1_555 B MN MN . A MN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 A OD1 ASP 97 A ASP 97 1_555 B MN MN . A MN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 A OD1 ASP 108 A ASP 108 1_555 B MN MN . A MN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 A OD2 ASP 108 A ASP 108 1_555 C MN MN . A MN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc7 A NE2 HIS 171 A HIS 171 1_555 C MN MN . A MN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 A OE2 GLU 204 A GLU 204 1_555 C MN MN . A MN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 A O SER 231 A SER 231 1_555 D NA NA . A NA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 A OE1 GLU 235 A GLU 235 1_555 B MN MN . A MN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 A OE2 GLU 235 A GLU 235 1_555 C MN MN . A MN 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc12 B MN MN . A MN 265 1_555 E OXT FCD . A FCD 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc13 B MN MN . A MN 265 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc14 C MN MN . A MN 266 1_555 E OB FCD . A FCD 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc15 C MN MN . A MN 266 1_555 E OXT FCD . A FCD 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc16 D NA NA . A NA 267 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XNZ _atom_sites.fract_transf_matrix[1][1] 0.026596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 265 184 MN MN2 . C 2 MN A 1 266 185 MN MN2 . D 3 NA A 1 267 186 NA NA1 . E 4 FCD A 1 268 183 FCD FCA . F 5 HOH A 1 269 1 HOH HOH . F 5 HOH A 2 270 2 HOH HOH . F 5 HOH A 3 271 3 HOH HOH . F 5 HOH A 4 272 4 HOH HOH . F 5 HOH A 5 273 5 HOH HOH . F 5 HOH A 6 274 6 HOH HOH . F 5 HOH A 7 275 7 HOH HOH . F 5 HOH A 8 276 8 HOH HOH . F 5 HOH A 9 277 9 HOH HOH . F 5 HOH A 10 278 10 HOH HOH . F 5 HOH A 11 279 11 HOH HOH . F 5 HOH A 12 280 12 HOH HOH . F 5 HOH A 13 281 13 HOH HOH . F 5 HOH A 14 282 14 HOH HOH . F 5 HOH A 15 283 15 HOH HOH . F 5 HOH A 16 284 16 HOH HOH . F 5 HOH A 17 285 17 HOH HOH . F 5 HOH A 18 286 18 HOH HOH . F 5 HOH A 19 287 19 HOH HOH . F 5 HOH A 20 288 20 HOH HOH . F 5 HOH A 21 289 21 HOH HOH . F 5 HOH A 22 290 22 HOH HOH . F 5 HOH A 23 291 23 HOH HOH . F 5 HOH A 24 292 24 HOH HOH . F 5 HOH A 25 293 25 HOH HOH . F 5 HOH A 26 294 26 HOH HOH . F 5 HOH A 27 295 27 HOH HOH . F 5 HOH A 28 296 28 HOH HOH . F 5 HOH A 29 297 29 HOH HOH . F 5 HOH A 30 298 30 HOH HOH . F 5 HOH A 31 299 31 HOH HOH . F 5 HOH A 32 300 32 HOH HOH . F 5 HOH A 33 301 33 HOH HOH . F 5 HOH A 34 302 34 HOH HOH . F 5 HOH A 35 303 35 HOH HOH . F 5 HOH A 36 304 36 HOH HOH . F 5 HOH A 37 305 37 HOH HOH . F 5 HOH A 38 306 38 HOH HOH . F 5 HOH A 39 307 39 HOH HOH . F 5 HOH A 40 308 40 HOH HOH . F 5 HOH A 41 309 41 HOH HOH . F 5 HOH A 42 310 42 HOH HOH . F 5 HOH A 43 311 43 HOH HOH . F 5 HOH A 44 312 44 HOH HOH . F 5 HOH A 45 313 45 HOH HOH . F 5 HOH A 46 314 46 HOH HOH . F 5 HOH A 47 315 47 HOH HOH . F 5 HOH A 48 316 48 HOH HOH . F 5 HOH A 49 317 49 HOH HOH . F 5 HOH A 50 318 50 HOH HOH . F 5 HOH A 51 319 51 HOH HOH . F 5 HOH A 52 320 52 HOH HOH . F 5 HOH A 53 321 53 HOH HOH . F 5 HOH A 54 322 54 HOH HOH . F 5 HOH A 55 323 55 HOH HOH . F 5 HOH A 56 324 56 HOH HOH . F 5 HOH A 57 325 57 HOH HOH . F 5 HOH A 58 326 58 HOH HOH . F 5 HOH A 59 327 59 HOH HOH . F 5 HOH A 60 328 60 HOH HOH . F 5 HOH A 61 329 61 HOH HOH . F 5 HOH A 62 330 62 HOH HOH . F 5 HOH A 63 331 63 HOH HOH . F 5 HOH A 64 332 64 HOH HOH . F 5 HOH A 65 333 65 HOH HOH . F 5 HOH A 66 334 66 HOH HOH . F 5 HOH A 67 335 67 HOH HOH . F 5 HOH A 68 336 68 HOH HOH . F 5 HOH A 69 337 69 HOH HOH . F 5 HOH A 70 338 70 HOH HOH . F 5 HOH A 71 339 71 HOH HOH . F 5 HOH A 72 340 72 HOH HOH . F 5 HOH A 73 341 73 HOH HOH . F 5 HOH A 74 342 74 HOH HOH . F 5 HOH A 75 343 75 HOH HOH . F 5 HOH A 76 344 76 HOH HOH . F 5 HOH A 77 345 77 HOH HOH . F 5 HOH A 78 346 78 HOH HOH . F 5 HOH A 79 347 79 HOH HOH . F 5 HOH A 80 348 80 HOH HOH . F 5 HOH A 81 349 81 HOH HOH . F 5 HOH A 82 350 82 HOH HOH . F 5 HOH A 83 351 83 HOH HOH . F 5 HOH A 84 352 84 HOH HOH . F 5 HOH A 85 353 85 HOH HOH . F 5 HOH A 86 354 86 HOH HOH . F 5 HOH A 87 355 87 HOH HOH . F 5 HOH A 88 356 88 HOH HOH . F 5 HOH A 89 357 89 HOH HOH . F 5 HOH A 90 358 90 HOH HOH . F 5 HOH A 91 359 91 HOH HOH . F 5 HOH A 92 360 92 HOH HOH . F 5 HOH A 93 361 93 HOH HOH . F 5 HOH A 94 362 94 HOH HOH . F 5 HOH A 95 363 95 HOH HOH . F 5 HOH A 96 364 96 HOH HOH . F 5 HOH A 97 365 97 HOH HOH . F 5 HOH A 98 366 98 HOH HOH . F 5 HOH A 99 367 99 HOH HOH . F 5 HOH A 100 368 100 HOH HOH . F 5 HOH A 101 369 101 HOH HOH . F 5 HOH A 102 370 102 HOH HOH . F 5 HOH A 103 371 103 HOH HOH . F 5 HOH A 104 372 104 HOH HOH . F 5 HOH A 105 373 105 HOH HOH . F 5 HOH A 106 374 106 HOH HOH . F 5 HOH A 107 375 107 HOH HOH . F 5 HOH A 108 376 108 HOH HOH . F 5 HOH A 109 377 109 HOH HOH . F 5 HOH A 110 378 110 HOH HOH . F 5 HOH A 111 379 111 HOH HOH . F 5 HOH A 112 380 112 HOH HOH . F 5 HOH A 113 381 113 HOH HOH . F 5 HOH A 114 382 114 HOH HOH . F 5 HOH A 115 383 115 HOH HOH . F 5 HOH A 116 384 116 HOH HOH . F 5 HOH A 117 385 117 HOH HOH . F 5 HOH A 118 386 118 HOH HOH . F 5 HOH A 119 387 119 HOH HOH . F 5 HOH A 120 388 120 HOH HOH . F 5 HOH A 121 389 121 HOH HOH . F 5 HOH A 122 390 122 HOH HOH . F 5 HOH A 123 391 123 HOH HOH . F 5 HOH A 124 392 124 HOH HOH . F 5 HOH A 125 393 125 HOH HOH . F 5 HOH A 126 394 126 HOH HOH . F 5 HOH A 127 395 127 HOH HOH . F 5 HOH A 128 396 128 HOH HOH . F 5 HOH A 129 397 129 HOH HOH . F 5 HOH A 130 398 130 HOH HOH . F 5 HOH A 131 399 131 HOH HOH . F 5 HOH A 132 400 132 HOH HOH . F 5 HOH A 133 401 133 HOH HOH . F 5 HOH A 134 402 134 HOH HOH . F 5 HOH A 135 403 135 HOH HOH . F 5 HOH A 136 404 136 HOH HOH . F 5 HOH A 137 405 137 HOH HOH . F 5 HOH A 138 406 138 HOH HOH . F 5 HOH A 139 407 139 HOH HOH . F 5 HOH A 140 408 140 HOH HOH . F 5 HOH A 141 409 141 HOH HOH . F 5 HOH A 142 410 142 HOH HOH . F 5 HOH A 143 411 143 HOH HOH . F 5 HOH A 144 412 144 HOH HOH . F 5 HOH A 145 413 145 HOH HOH . F 5 HOH A 146 414 146 HOH HOH . F 5 HOH A 147 415 147 HOH HOH . F 5 HOH A 148 416 148 HOH HOH . F 5 HOH A 149 417 149 HOH HOH . F 5 HOH A 150 418 150 HOH HOH . F 5 HOH A 151 419 151 HOH HOH . F 5 HOH A 152 420 152 HOH HOH . F 5 HOH A 153 421 153 HOH HOH . F 5 HOH A 154 422 154 HOH HOH . F 5 HOH A 155 423 155 HOH HOH . F 5 HOH A 156 424 156 HOH HOH . F 5 HOH A 157 425 157 HOH HOH . F 5 HOH A 158 426 158 HOH HOH . F 5 HOH A 159 427 159 HOH HOH . F 5 HOH A 160 428 160 HOH HOH . F 5 HOH A 161 429 161 HOH HOH . F 5 HOH A 162 430 162 HOH HOH . F 5 HOH A 163 431 163 HOH HOH . F 5 HOH A 164 432 164 HOH HOH . F 5 HOH A 165 433 165 HOH HOH . F 5 HOH A 166 434 166 HOH HOH . F 5 HOH A 167 435 167 HOH HOH . F 5 HOH A 168 436 168 HOH HOH . F 5 HOH A 169 437 169 HOH HOH . F 5 HOH A 170 438 170 HOH HOH . F 5 HOH A 171 439 171 HOH HOH . F 5 HOH A 172 440 172 HOH HOH . F 5 HOH A 173 441 173 HOH HOH . F 5 HOH A 174 442 174 HOH HOH . F 5 HOH A 175 443 175 HOH HOH . F 5 HOH A 176 444 176 HOH HOH . F 5 HOH A 177 445 177 HOH HOH . F 5 HOH A 178 446 178 HOH HOH . F 5 HOH A 179 447 179 HOH HOH . F 5 HOH A 180 448 180 HOH HOH . F 5 HOH A 181 449 181 HOH HOH . F 5 HOH A 182 450 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 2.931 _atom_site.Cartn_y 0.033 _atom_site.Cartn_z 7.33 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 266 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #