data_1XOG # _model_server_result.job_id ZTFF1SftZo4Jg1jQeexKCA _model_server_result.datetime_utc '2025-03-04 05:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 1XOG # _exptl.entry_id 1XOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.336 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[1-(ACETYLAMINO)-3-METHYLBUTYL]-2,5-ANHYDRO-3,4-DIDEOXY-4-(METHOXYCARBONYL)PENTONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XOG _cell.length_a 180.344 _cell.length_b 180.344 _cell.length_c 180.344 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 MUL 2 n B NAG 2 B 2 NAG ? 200 MUL 2 n B BMA 3 B 3 BMA ? 200 MUL 2 n B MAN 4 B 4 MAN ? 200 MUL 2 n B MAN 5 B 5 MAN ? 200 MUL 2 n B MAN 6 B 6 MAN ? 200 MUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 93 1_555 A SG CYS 336 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 42 A CYS 125 1_555 A SG CYS 47 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 94 A CYS 177 1_555 A SG CYS 112 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 102 A CYS 185 1_555 A SG CYS 149 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 151 A CYS 234 1_555 A SG CYS 156 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 A SG CYS 197 A CYS 280 1_555 A SG CYS 210 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 199 A CYS 282 1_555 A SG CYS 208 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 A SG CYS 237 A CYS 320 1_555 A SG CYS 255 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 340 A CYS 423 1_555 A SG CYS 366 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale4 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale5 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C14 H23 N O6' _chem_comp.formula_weight 301.336 _chem_comp.id ABW _chem_comp.mon_nstd_flag . _chem_comp.name '5-[1-(ACETYLAMINO)-3-METHYLBUTYL]-2,5-ANHYDRO-3,4-DIDEOXY-4-(METHOXYCARBONYL)PENTONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C13 ABW sing 1 n n C1 C4 ABW sing 2 n n C1 C14 ABW sing 3 n n C1 H1 ABW sing 4 n n C13 O6 ABW sing 5 n n C13 C8 ABW sing 6 n n C13 H13 ABW sing 7 n n O6 C3 ABW sing 8 n n C3 C4 ABW sing 9 n n C3 C5 ABW sing 10 n n C3 H3 ABW sing 11 n n C4 H41 ABW sing 12 n n C4 H42 ABW sing 13 n n C5 O1 ABW sing 14 n n C5 O2 ABW doub 15 n n O1 HO1 ABW sing 16 n n N2 C6 ABW sing 17 n n N2 C8 ABW sing 18 n n N2 HN2 ABW sing 19 n n C6 C7 ABW sing 20 n n C6 O4 ABW doub 21 n n C7 H71 ABW sing 22 n n C7 H72 ABW sing 23 n n C7 H73 ABW sing 24 n n C8 C2 ABW sing 25 n n C8 H8 ABW sing 26 n n C2 C9 ABW sing 27 n n C2 H21 ABW sing 28 n n C2 H22 ABW sing 29 n n C9 C10 ABW sing 30 n n C9 C15 ABW sing 31 n n C9 H9 ABW sing 32 n n C10 H101 ABW sing 33 n n C10 H102 ABW sing 34 n n C10 H103 ABW sing 35 n n C15 H151 ABW sing 36 n n C15 H152 ABW sing 37 n n C15 H153 ABW sing 38 n n C14 O3 ABW doub 39 n n C14 O5 ABW sing 40 n n O5 C16 ABW sing 41 n n C16 H161 ABW sing 42 n n C16 H162 ABW sing 43 n n C16 H163 ABW sing 44 n n # _atom_sites.entry_id 1XOG _atom_sites.fract_transf_matrix[1][1] 0.005545 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN A 1 507 200 MAN MUL . D 4 NAG A 1 511 146 NAG NAG . E 4 NAG A 1 512 86 NAG NAG . F 5 ABW A 1 1000 1000 ABW LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ABW . . . F 5 24.483 16.493 63.006 1 11.17 ? C1 ABW 1000 A 1 HETATM 2 C C13 ABW . . . F 5 25.362 17.627 62.461 1 16.17 ? C13 ABW 1000 A 1 HETATM 3 O O6 ABW . . . F 5 25.45 18.53 63.557 1 16.17 ? O6 ABW 1000 A 1 HETATM 4 C C3 ABW . . . F 5 24.347 18.354 64.415 1 11.17 ? C3 ABW 1000 A 1 HETATM 5 C C4 ABW . . . F 5 23.466 17.278 63.797 1 11.17 ? C4 ABW 1000 A 1 HETATM 6 C C5 ABW . . . F 5 23.592 19.662 64.645 1 11.17 ? C5 ABW 1000 A 1 HETATM 7 O O1 ABW . . . F 5 22.604 19.634 65.356 1 11.17 ? O1 ABW 1000 A 1 HETATM 8 O O2 ABW . . . F 5 24.033 20.686 64.094 1 11.17 ? O2 ABW 1000 A 1 HETATM 9 N N2 ABW . . . F 5 26.81 16.309 60.921 1 11.17 ? N2 ABW 1000 A 1 HETATM 10 C C6 ABW . . . F 5 27.194 15.007 61.079 1 11.17 ? C6 ABW 1000 A 1 HETATM 11 C C7 ABW . . . F 5 27.093 14.149 59.807 1 11.17 ? C7 ABW 1000 A 1 HETATM 12 O O4 ABW . . . F 5 27.578 14.544 62.136 1 11.17 ? O4 ABW 1000 A 1 HETATM 13 C C8 ABW . . . F 5 26.822 17.287 62.019 1 16.17 ? C8 ABW 1000 A 1 HETATM 14 C C2 ABW . . . F 5 27.468 18.596 61.506 1 16.17 ? C2 ABW 1000 A 1 HETATM 15 C C9 ABW . . . F 5 28.778 19.162 62.101 1 11.17 ? C9 ABW 1000 A 1 HETATM 16 C C10 ABW . . . F 5 29.05 20.449 61.316 1 11.17 ? C10 ABW 1000 A 1 HETATM 17 C C15 ABW . . . F 5 28.697 19.527 63.607 1 16.17 ? C15 ABW 1000 A 1 HETATM 18 C C14 ABW . . . F 5 23.78 15.674 61.893 1 16.17 ? C14 ABW 1000 A 1 HETATM 19 O O3 ABW . . . F 5 23.217 16.167 60.949 1 16.17 ? O3 ABW 1000 A 1 HETATM 20 O O5 ABW . . . F 5 23.869 14.357 62.103 1 16.17 ? O5 ABW 1000 A 1 HETATM 21 C C16 ABW . . . F 5 23.274 13.444 61.179 1 16.17 ? C16 ABW 1000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #