data_1XOS # _model_server_result.job_id YjJCJb8l6AcmzVD1bvjAIw _model_server_result.datetime_utc '2024-11-24 18:05:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1XOS # _exptl.entry_id 1XOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.576 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H-PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XOS _cell.length_a 94.571 _cell.length_b 107.117 _cell.length_c 89.481 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 63 A THR 193 1_555 A N CME 64 A CME 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CME 64 A CME 194 1_555 A N ILE 65 A ILE 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C HIS 189 A HIS 319 1_555 A N CME 190 A CME 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CME 190 A CME 320 1_555 A N ASP 191 A ASP 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C MET 301 A MET 431 1_555 A N CME 302 A CME 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C CME 302 A CME 432 1_555 A N ASP 303 A ASP 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A NE2 HIS 108 A HIS 238 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A NE2 HIS 144 A HIS 274 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 A OD2 ASP 145 A ASP 275 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A OD1 ASP 145 A ASP 275 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc5 A OD2 ASP 262 A ASP 392 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc6 B ZN ZN . A ZN 1001 1_555 F O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc7 B ZN ZN . A ZN 1001 1_555 F O HOH . A HOH 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc8 C MG MG . A MG 1002 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc9 C MG MG . A MG 1002 1_555 F O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc10 C MG MG . A MG 1002 1_555 F O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc11 C MG MG . A MG 1002 1_555 F O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 C MG MG . A MG 1002 1_555 F O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? # _chem_comp.formula 'C22 H30 N6 O4 S' _chem_comp.formula_weight 474.576 _chem_comp.id VIA _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-ETHOXY-5-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-1-METHYL-3-PROPYL-1H,6H,7H-PYRAZOLO[4,3-D]PYRIMIDIN-7-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SILDENAFIL;VIAGRA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 VIA sing 401 n n C34 H341 VIA sing 402 n n C34 H342 VIA sing 403 n n C34 H343 VIA sing 404 n n C33 C32 VIA sing 405 n n C33 H331 VIA sing 406 n n C33 H332 VIA sing 407 n n C32 C30 VIA sing 408 n n C32 H321 VIA sing 409 n n C32 H322 VIA sing 410 n n C30 N29 VIA doub 411 n y C30 C25 VIA sing 412 n y N29 N28 VIA sing 413 n y N28 C31 VIA sing 414 n n N28 C24 VIA sing 415 n y C31 H311 VIA sing 416 n n C31 H312 VIA sing 417 n n C31 H313 VIA sing 418 n n C24 C23 VIA sing 419 n y C24 C25 VIA doub 420 n y C23 O27 VIA doub 421 n n C23 N22 VIA sing 422 n y N22 C21 VIA sing 423 n y N22 H22 VIA sing 424 n n C21 N26 VIA doub 425 n y C21 C9 VIA sing 426 n y N26 C25 VIA sing 427 n y C9 C8 VIA doub 428 n y C9 C4 VIA sing 429 n y C8 C7 VIA sing 430 n y C8 H8 VIA sing 431 n n C7 C6 VIA doub 432 n y C7 S10 VIA sing 433 n n C6 C5 VIA sing 434 n y C6 H6 VIA sing 435 n n C5 C4 VIA doub 436 n y C5 H5 VIA sing 437 n n C4 O3 VIA sing 438 n n O3 C2 VIA sing 439 n n C2 C1 VIA sing 440 n n C2 H21 VIA sing 441 n n C2 H22A VIA sing 442 n n C1 H11 VIA sing 443 n n C1 H12 VIA sing 444 n n C1 H13 VIA sing 445 n n S10 O11 VIA doub 446 n n S10 O12 VIA doub 447 n n S10 N14 VIA sing 448 n n N14 C19 VIA sing 449 n n N14 C15 VIA sing 450 n n C19 C18 VIA sing 451 n n C19 H191 VIA sing 452 n n C19 H192 VIA sing 453 n n C18 N17 VIA sing 454 n n C18 H181 VIA sing 455 n n C18 H182 VIA sing 456 n n N17 C20 VIA sing 457 n n N17 C16 VIA sing 458 n n C20 H201 VIA sing 459 n n C20 H202 VIA sing 460 n n C20 H203 VIA sing 461 n n C16 C15 VIA sing 462 n n C16 H161 VIA sing 463 n n C16 H162 VIA sing 464 n n C15 H151 VIA sing 465 n n C15 H152 VIA sing 466 n n # _atom_sites.entry_id 1XOS _atom_sites.fract_transf_matrix[1][1] 0.010574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1001 ZN ZN . C 3 MG A 1 1002 1002 MG MG . D 4 SO4 A 1 2 2 SO4 SO4 . E 5 VIA A 1 1 1 VIA VIA . F 6 HOH A 1 3 3 HOH HOH . F 6 HOH A 2 4 4 HOH HOH . F 6 HOH A 3 5 5 HOH HOH . F 6 HOH A 4 6 6 HOH HOH . F 6 HOH A 5 7 7 HOH HOH . F 6 HOH A 6 8 8 HOH HOH . F 6 HOH A 7 9 9 HOH HOH . F 6 HOH A 8 10 10 HOH HOH . F 6 HOH A 9 11 11 HOH HOH . F 6 HOH A 10 12 12 HOH HOH . F 6 HOH A 11 1003 1003 HOH HOH . F 6 HOH A 12 1004 1004 HOH HOH . F 6 HOH A 13 1005 1005 HOH HOH . F 6 HOH A 14 1006 1006 HOH HOH . F 6 HOH A 15 1007 1007 HOH HOH . F 6 HOH A 16 1008 1008 HOH HOH . F 6 HOH A 17 1009 1009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 VIA . . . E 5 -0.52 69.583 42.504 1 96.5 ? C34 VIA 1 A 1 HETATM 2 C C33 VIA . . . E 5 -0.609 68.341 43.343 1 95.49 ? C33 VIA 1 A 1 HETATM 3 C C32 VIA . . . E 5 0.7 68.069 44.017 1 94.32 ? C32 VIA 1 A 1 HETATM 4 C C30 VIA . . . E 5 0.856 66.678 44.456 1 94.48 ? C30 VIA 1 A 1 HETATM 5 N N29 VIA . . . E 5 1.003 66.207 45.73 1 95.2 ? N29 VIA 1 A 1 HETATM 6 N N28 VIA . . . E 5 1.133 64.88 45.702 1 95.08 ? N28 VIA 1 A 1 HETATM 7 C C31 VIA . . . E 5 1.302 64.088 46.904 1 95 ? C31 VIA 1 A 1 HETATM 8 C C24 VIA . . . E 5 1.077 64.419 44.374 1 95.36 ? C24 VIA 1 A 1 HETATM 9 C C23 VIA . . . E 5 1.146 63.104 43.723 1 94.94 ? C23 VIA 1 A 1 HETATM 10 O O27 VIA . . . E 5 1.296 62.009 44.301 1 95.14 ? O27 VIA 1 A 1 HETATM 11 N N22 VIA . . . E 5 1.022 63.155 42.307 1 94.93 ? N22 VIA 1 A 1 HETATM 12 C C21 VIA . . . E 5 0.85 64.386 41.612 1 94.13 ? C21 VIA 1 A 1 HETATM 13 N N26 VIA . . . E 5 0.783 65.572 42.189 1 94.36 ? N26 VIA 1 A 1 HETATM 14 C C25 VIA . . . E 5 0.894 65.581 43.551 1 94.83 ? C25 VIA 1 A 1 HETATM 15 C C9 VIA . . . E 5 0.729 64.417 40.125 1 93.18 ? C9 VIA 1 A 1 HETATM 16 C C8 VIA . . . E 5 -0.191 65.324 39.579 1 92.32 ? C8 VIA 1 A 1 HETATM 17 C C7 VIA . . . E 5 -0.389 65.46 38.191 1 91.87 ? C7 VIA 1 A 1 HETATM 18 C C6 VIA . . . E 5 0.402 64.638 37.356 1 92.19 ? C6 VIA 1 A 1 HETATM 19 C C5 VIA . . . E 5 1.337 63.734 37.87 1 92.72 ? C5 VIA 1 A 1 HETATM 20 C C4 VIA . . . E 5 1.528 63.603 39.271 1 92.74 ? C4 VIA 1 A 1 HETATM 21 O O3 VIA . . . E 5 2.419 62.767 39.914 1 91.4 ? O3 VIA 1 A 1 HETATM 22 C C2 VIA . . . E 5 3.052 61.669 39.238 1 91.01 ? C2 VIA 1 A 1 HETATM 23 C C1 VIA . . . E 5 2.005 60.587 39.074 1 90.94 ? C1 VIA 1 A 1 HETATM 24 S S10 VIA . . . E 5 -1.539 66.566 37.558 1 90.34 ? S10 VIA 1 A 1 HETATM 25 O O11 VIA . . . E 5 -2.364 67.001 38.62 1 90.11 ? O11 VIA 1 A 1 HETATM 26 O O12 VIA . . . E 5 -2.2 65.927 36.484 1 87.32 ? O12 VIA 1 A 1 HETATM 27 N N14 VIA . . . E 5 -0.69 67.871 37.029 1 91.53 ? N14 VIA 1 A 1 HETATM 28 C C19 VIA . . . E 5 0.144 68.653 37.919 1 92.11 ? C19 VIA 1 A 1 HETATM 29 C C18 VIA . . . E 5 0.401 70.111 37.466 1 92.54 ? C18 VIA 1 A 1 HETATM 30 N N17 VIA . . . E 5 0.801 70.213 36.068 1 92.28 ? N17 VIA 1 A 1 HETATM 31 C C20 VIA . . . E 5 1.144 71.555 35.637 1 92.6 ? C20 VIA 1 A 1 HETATM 32 C C16 VIA . . . E 5 -0.145 69.545 35.197 1 91.89 ? C16 VIA 1 A 1 HETATM 33 C C15 VIA . . . E 5 -0.386 68.078 35.622 1 91.73 ? C15 VIA 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #