data_1XP5 # _model_server_result.job_id pqtuP6i0IyRVUePCLayN9A _model_server_result.datetime_utc '2024-11-04 22:51:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":999}' # _entry.id 1XP5 # _exptl.entry_id 1XP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XP5 _cell.length_a 86.51 _cell.length_b 119.27 _cell.length_c 142.26 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 183 A GLU 183 1_555 C AL ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.515 ? metalc ? metalc2 A OE1 GLN 244 A GLN 244 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc3 A OD2 ASP 351 A ASP 351 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASP 351 A ASP 351 1_555 C AL ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 A OD2 ASP 351 A ASP 351 1_555 C AL ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc6 A O THR 353 A THR 353 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A NZ LYS 684 A LYS 684 1_555 C AL ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.693 ? metalc ? metalc8 A OD2 ASP 703 A ASP 703 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc9 A O LEU 711 A LEU 711 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc10 A O LYS 712 A LYS 712 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.071 ? metalc ? metalc11 A O ALA 714 A ALA 714 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc12 A OE1 GLU 732 A GLU 732 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc13 A OE2 GLU 732 A GLU 732 1_555 D K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc14 B MG MG . A MG 2001 1_555 C F3 ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc15 B MG MG . A MG 2001 1_555 C AL ALF . A ALF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.602 ? metalc ? metalc16 B MG MG . A MG 2001 1_555 F O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc17 B MG MG . A MG 2001 1_555 F O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc18 C AL ALF . A ALF 2002 1_555 F O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.532 ? metalc ? metalc19 C AL ALF . A ALF 2002 1_555 F O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 294 n n C34 H341 TG1 sing 295 n n C34 H342 TG1 sing 296 n n C34 H343 TG1 sing 297 n n C11 C7 TG1 sing 298 n n C11 C12 TG1 sing 299 n n C11 O11 TG1 sing 300 n n C7 C8 TG1 sing 301 n n C7 C6 TG1 sing 302 n n C7 O6 TG1 sing 303 n n C8 C9 TG1 sing 304 n n C8 O7 TG1 sing 305 n n C8 HC8 TG1 sing 306 n n C9 C10 TG1 sing 307 n n C9 HC91 TG1 sing 308 n n C9 HC92 TG1 sing 309 n n C10 C1 TG1 sing 310 n n C10 C31 TG1 sing 311 n n C10 O9 TG1 sing 312 n n C1 C2 TG1 sing 313 n n C1 C5 TG1 sing 314 n n C1 HC1 TG1 sing 315 n n C2 O1 TG1 sing 316 n n C2 C3 TG1 sing 317 n n C2 HC2 TG1 sing 318 n n O1 C13 TG1 sing 319 n n C13 O2 TG1 doub 320 n n C13 C14 TG1 sing 321 n n C14 C15 TG1 sing 322 n n C14 H141 TG1 sing 323 n n C14 H142 TG1 sing 324 n n C15 C16 TG1 sing 325 n n C15 H151 TG1 sing 326 n n C15 H152 TG1 sing 327 n n C16 C17 TG1 sing 328 n n C16 H161 TG1 sing 329 n n C16 H162 TG1 sing 330 n n C17 C18 TG1 sing 331 n n C17 H171 TG1 sing 332 n n C17 H172 TG1 sing 333 n n C18 C19 TG1 sing 334 n n C18 H181 TG1 sing 335 n n C18 H182 TG1 sing 336 n n C19 C20 TG1 sing 337 n n C19 H191 TG1 sing 338 n n C19 H192 TG1 sing 339 n n C20 H201 TG1 sing 340 n n C20 H202 TG1 sing 341 n n C20 H203 TG1 sing 342 n n C3 O3 TG1 sing 343 n n C3 C4 TG1 sing 344 n n C3 HC3 TG1 sing 345 n n O3 C21 TG1 sing 346 n n C21 O4 TG1 doub 347 n n C21 C22 TG1 sing 348 n n C22 C23 TG1 sing 349 n n C22 C24 TG1 doub 350 z n C23 H231 TG1 sing 351 n n C23 H232 TG1 sing 352 n n C23 H233 TG1 sing 353 n n C24 C25 TG1 sing 354 n n C24 H24 TG1 sing 355 n n C25 H251 TG1 sing 356 n n C25 H252 TG1 sing 357 n n C25 H253 TG1 sing 358 n n C4 C26 TG1 sing 359 n n C4 C5 TG1 doub 360 n n C26 H261 TG1 sing 361 n n C26 H262 TG1 sing 362 n n C26 H263 TG1 sing 363 n n C5 C6 TG1 sing 364 n n C6 O5 TG1 sing 365 n n C6 HC6 TG1 sing 366 n n O5 C12 TG1 sing 367 n n C12 O12 TG1 doub 368 n n C31 H311 TG1 sing 369 n n C31 H312 TG1 sing 370 n n C31 H313 TG1 sing 371 n n O9 C32 TG1 sing 372 n n C32 O10 TG1 doub 373 n n C32 C33 TG1 sing 374 n n C33 H331 TG1 sing 375 n n C33 H332 TG1 sing 376 n n C33 H333 TG1 sing 377 n n O7 C27 TG1 sing 378 n n C27 O8 TG1 doub 379 n n C27 C28 TG1 sing 380 n n C28 C29 TG1 sing 381 n n C28 H281 TG1 sing 382 n n C28 H282 TG1 sing 383 n n C29 C30 TG1 sing 384 n n C29 H291 TG1 sing 385 n n C29 H292 TG1 sing 386 n n C30 H301 TG1 sing 387 n n C30 H302 TG1 sing 388 n n C30 H303 TG1 sing 389 n n O6 HO6 TG1 sing 390 n n O11 HO11 TG1 sing 391 n n # _atom_sites.entry_id 1XP5 _atom_sites.fract_transf_matrix[1][1] 0.011559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 ALF A 1 2002 2 ALF ALF . D 4 K A 1 2003 3 K K . E 5 TG1 A 1 999 999 TG1 TG1 . F 6 HOH A 1 2004 5 HOH HOH . F 6 HOH A 2 2005 61 HOH HOH . F 6 HOH A 3 2006 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . E 5 0.706 28.87 -54.954 1 134.58 ? C34 TG1 999 A 1 HETATM 2 C C11 TG1 . . . E 5 1.116 28.478 -56.426 1 133.16 ? C11 TG1 999 A 1 HETATM 3 C C7 TG1 . . . E 5 1.002 29.701 -57.458 1 135.86 ? C7 TG1 999 A 1 HETATM 4 C C8 TG1 . . . E 5 2.132 30.865 -57.342 1 139.84 ? C8 TG1 999 A 1 HETATM 5 C C9 TG1 . . . E 5 2.052 32.059 -58.361 1 144.18 ? C9 TG1 999 A 1 HETATM 6 C C10 TG1 . . . E 5 1.838 31.816 -59.92 1 144.79 ? C10 TG1 999 A 1 HETATM 7 C C1 TG1 . . . E 5 0.577 30.923 -60.44 1 139.39 ? C1 TG1 999 A 1 HETATM 8 C C2 TG1 . . . E 5 0.368 31.036 -61.994 1 138.14 ? C2 TG1 999 A 1 HETATM 9 O O1 TG1 . . . E 5 -0.969 31.528 -62.305 1 133.39 ? O1 TG1 999 A 1 HETATM 10 C C13 TG1 . . . E 5 -1.122 32.091 -63.646 1 129.92 ? C13 TG1 999 A 1 HETATM 11 O O2 TG1 . . . E 5 -0.458 32.994 -64.161 1 127.72 ? O2 TG1 999 A 1 HETATM 12 C C14 TG1 . . . E 5 -2.283 31.359 -64.353 1 123.83 ? C14 TG1 999 A 1 HETATM 13 C C15 TG1 . . . E 5 -2.013 30.949 -65.801 1 123.16 ? C15 TG1 999 A 1 HETATM 14 C C16 TG1 . . . E 5 -1.93 32.089 -66.837 1 123.72 ? C16 TG1 999 A 1 HETATM 15 C C17 TG1 . . . E 5 -1.036 31.742 -68.051 1 120.09 ? C17 TG1 999 A 1 HETATM 16 C C18 TG1 . . . E 5 -1.847 31.532 -69.348 1 113.91 ? C18 TG1 999 A 1 HETATM 17 C C19 TG1 . . . E 5 -1.796 32.69 -70.34 1 113.99 ? C19 TG1 999 A 1 HETATM 18 C C20 TG1 . . . E 5 -2.912 33.687 -70 1 107.94 ? C20 TG1 999 A 1 HETATM 19 C C3 TG1 . . . E 5 0.455 29.65 -62.61 1 141.21 ? C3 TG1 999 A 1 HETATM 20 O O3 TG1 . . . E 5 1.751 29.884 -63.365 1 147.3 ? O3 TG1 999 A 1 HETATM 21 C C21 TG1 . . . E 5 1.91 29.507 -64.64 1 151.18 ? C21 TG1 999 A 1 HETATM 22 O O4 TG1 . . . E 5 1.353 28.438 -65.205 1 152.56 ? O4 TG1 999 A 1 HETATM 23 C C22 TG1 . . . E 5 2.872 30.466 -65.469 1 151.98 ? C22 TG1 999 A 1 HETATM 24 C C23 TG1 . . . E 5 2.099 31.13 -66.542 1 154.56 ? C23 TG1 999 A 1 HETATM 25 C C24 TG1 . . . E 5 4.167 30.766 -65.38 1 151.76 ? C24 TG1 999 A 1 HETATM 26 C C25 TG1 . . . E 5 5.229 30.29 -64.43 1 147.52 ? C25 TG1 999 A 1 HETATM 27 C C4 TG1 . . . E 5 0.651 28.734 -61.422 1 141.68 ? C4 TG1 999 A 1 HETATM 28 C C26 TG1 . . . E 5 0.749 27.256 -61.688 1 143.26 ? C26 TG1 999 A 1 HETATM 29 C C5 TG1 . . . E 5 0.721 29.411 -60.226 1 138.22 ? C5 TG1 999 A 1 HETATM 30 C C6 TG1 . . . E 5 0.922 28.826 -58.768 1 134.18 ? C6 TG1 999 A 1 HETATM 31 O O5 TG1 . . . E 5 -0.129 27.912 -58.393 1 127.3 ? O5 TG1 999 A 1 HETATM 32 C C12 TG1 . . . E 5 0.196 27.463 -57.138 1 129.95 ? C12 TG1 999 A 1 HETATM 33 O O12 TG1 . . . E 5 -0.16 26.39 -56.649 1 126.86 ? O12 TG1 999 A 1 HETATM 34 C C31 TG1 . . . E 5 3.245 31.321 -60.449 1 150.29 ? C31 TG1 999 A 1 HETATM 35 O O9 TG1 . . . E 5 1.873 33.159 -60.61 1 146.47 ? O9 TG1 999 A 1 HETATM 36 C C32 TG1 . . . E 5 1.098 34.263 -60.753 1 147.56 ? C32 TG1 999 A 1 HETATM 37 O O10 TG1 . . . E 5 -0.1 34.341 -60.556 1 148.78 ? O10 TG1 999 A 1 HETATM 38 C C33 TG1 . . . E 5 1.932 35.367 -61.226 1 147.31 ? C33 TG1 999 A 1 HETATM 39 O O7 TG1 . . . E 5 3.494 30.239 -57.411 1 143.05 ? O7 TG1 999 A 1 HETATM 40 C C27 TG1 . . . E 5 4.289 30.004 -56.244 1 147.39 ? C27 TG1 999 A 1 HETATM 41 O O8 TG1 . . . E 5 4.019 30.248 -55.059 1 149.43 ? O8 TG1 999 A 1 HETATM 42 C C28 TG1 . . . E 5 5.572 29.367 -56.686 1 149.75 ? C28 TG1 999 A 1 HETATM 43 C C29 TG1 . . . E 5 6.761 30.016 -55.981 1 154.85 ? C29 TG1 999 A 1 HETATM 44 C C30 TG1 . . . E 5 7.838 28.965 -55.934 1 155.59 ? C30 TG1 999 A 1 HETATM 45 O O6 TG1 . . . E 5 -0.328 30.364 -57.346 1 134.02 ? O6 TG1 999 A 1 HETATM 46 O O11 TG1 . . . E 5 2.339 27.666 -56.357 1 130.03 ? O11 TG1 999 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #