data_1XP9 # _model_server_result.job_id N_79EShLyGf4gYy16BlEwA _model_server_result.datetime_utc '2024-11-05 04:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1XP9 # _exptl.entry_id 1XP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.588 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-(4-HYDROXYPHENYL)-2-(4-{[(2S)-2-PYRROLIDIN-1-YLPROPYL]OXY}PHENYL)-2,3-DIHYDRO-1,4-BENZOXATHIIN-6-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XP9 _cell.length_a 58.64 _cell.length_b 58.64 _cell.length_c 275.77 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.32 50.78373 45.961667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 N O4 S' _chem_comp.formula_weight 463.588 _chem_comp.id AIJ _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R)-3-(4-HYDROXYPHENYL)-2-(4-{[(2S)-2-PYRROLIDIN-1-YLPROPYL]OXY}PHENYL)-2,3-DIHYDRO-1,4-BENZOXATHIIN-6-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'COMPOUND 18' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AIJ sing 1 n n C1 S11 AIJ sing 2 n n C1 C12 AIJ sing 3 n n C1 H1 AIJ sing 4 n n C2 O3 AIJ sing 5 n n C2 C19 AIJ sing 6 n n C2 H2 AIJ sing 7 n n O3 C4 AIJ sing 8 n n C4 C5 AIJ doub 9 n y C4 C10 AIJ sing 10 n y C5 C6 AIJ sing 11 n y C5 H5 AIJ sing 12 n n C6 C7 AIJ doub 13 n y C6 H6 AIJ sing 14 n n C7 O8 AIJ sing 15 n n C7 C9 AIJ sing 16 n y O8 HO8 AIJ sing 17 n n C9 C10 AIJ doub 18 n y C9 H9 AIJ sing 19 n n C10 S11 AIJ sing 20 n n C12 C13 AIJ doub 21 n y C12 C18 AIJ sing 22 n y C13 C14 AIJ sing 23 n y C13 H13 AIJ sing 24 n n C14 C15 AIJ doub 25 n y C14 H14 AIJ sing 26 n n C15 O16 AIJ sing 27 n n C15 C17 AIJ sing 28 n y O16 H16 AIJ sing 29 n n C17 C18 AIJ doub 30 n y C17 H17 AIJ sing 31 n n C18 H18 AIJ sing 32 n n C19 C20 AIJ doub 33 n y C19 C24 AIJ sing 34 n y C20 C21 AIJ sing 35 n y C20 H20 AIJ sing 36 n n C21 C22 AIJ doub 37 n y C21 H21 AIJ sing 38 n n C22 C23 AIJ sing 39 n y C22 O25 AIJ sing 40 n n C23 C24 AIJ doub 41 n y C23 H23 AIJ sing 42 n n C24 H24 AIJ sing 43 n n O25 C26 AIJ sing 44 n n C26 C27 AIJ sing 45 n n C26 H261 AIJ sing 46 n n C26 H262 AIJ sing 47 n n C27 C28 AIJ sing 48 n n C27 N29 AIJ sing 49 n n C27 H27 AIJ sing 50 n n C28 H281 AIJ sing 51 n n C28 H282 AIJ sing 52 n n C28 H283 AIJ sing 53 n n N29 C30 AIJ sing 54 n n N29 C33 AIJ sing 55 n n C30 C31 AIJ sing 56 n n C30 H301 AIJ sing 57 n n C30 H302 AIJ sing 58 n n C31 C32 AIJ sing 59 n n C31 H311 AIJ sing 60 n n C31 H312 AIJ sing 61 n n C32 C33 AIJ sing 62 n n C32 H321 AIJ sing 63 n n C32 H322 AIJ sing 64 n n C33 H331 AIJ sing 65 n n C33 H332 AIJ sing 66 n n # _atom_sites.entry_id 1XP9 _atom_sites.fract_transf_matrix[1][1] 0.017053 _atom_sites.fract_transf_matrix[1][2] 0.009846 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIJ A 1 600 600 AIJ INH . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1037 1037 HOH HOH . C 3 HOH A 38 1038 1038 HOH HOH . C 3 HOH A 39 1039 1039 HOH HOH . C 3 HOH A 40 1040 1040 HOH HOH . C 3 HOH A 41 1041 1041 HOH HOH . C 3 HOH A 42 1042 1042 HOH HOH . C 3 HOH A 43 1043 1043 HOH HOH . C 3 HOH A 44 1044 1044 HOH HOH . C 3 HOH A 45 1045 1045 HOH HOH . C 3 HOH A 46 1046 1046 HOH HOH . C 3 HOH A 47 1047 1047 HOH HOH . C 3 HOH A 48 1048 1048 HOH HOH . C 3 HOH A 49 1049 1049 HOH HOH . C 3 HOH A 50 1050 1050 HOH HOH . C 3 HOH A 51 1051 1051 HOH HOH . C 3 HOH A 52 1052 1052 HOH HOH . C 3 HOH A 53 1053 1053 HOH HOH . C 3 HOH A 54 1054 1054 HOH HOH . C 3 HOH A 55 1055 1055 HOH HOH . C 3 HOH A 56 1056 1056 HOH HOH . C 3 HOH A 57 1057 1057 HOH HOH . C 3 HOH A 58 1058 1058 HOH HOH . C 3 HOH A 59 1059 1059 HOH HOH . C 3 HOH A 60 1060 1060 HOH HOH . C 3 HOH A 61 1061 1061 HOH HOH . C 3 HOH A 62 1062 1062 HOH HOH . C 3 HOH A 63 1063 1063 HOH HOH . C 3 HOH A 64 1064 1064 HOH HOH . C 3 HOH A 65 1065 1065 HOH HOH . C 3 HOH A 66 1066 1066 HOH HOH . C 3 HOH A 67 1067 1067 HOH HOH . C 3 HOH A 68 1068 1068 HOH HOH . C 3 HOH A 69 1069 1069 HOH HOH . C 3 HOH A 70 1070 1070 HOH HOH . C 3 HOH A 71 1071 1071 HOH HOH . C 3 HOH A 72 1072 1072 HOH HOH . C 3 HOH A 73 1073 1073 HOH HOH . C 3 HOH A 74 1074 1074 HOH HOH . C 3 HOH A 75 1075 1075 HOH HOH . C 3 HOH A 76 1076 1076 HOH HOH . C 3 HOH A 77 1077 1077 HOH HOH . C 3 HOH A 78 1078 1078 HOH HOH . C 3 HOH A 79 1079 1079 HOH HOH . C 3 HOH A 80 1080 1080 HOH HOH . C 3 HOH A 81 1081 1081 HOH HOH . C 3 HOH A 82 1082 1082 HOH HOH . C 3 HOH A 83 1083 1083 HOH HOH . C 3 HOH A 84 1084 1084 HOH HOH . C 3 HOH A 85 1085 1085 HOH HOH . C 3 HOH A 86 1086 1086 HOH HOH . C 3 HOH A 87 1087 1087 HOH HOH . C 3 HOH A 88 1088 1088 HOH HOH . C 3 HOH A 89 1089 1089 HOH HOH . C 3 HOH A 90 1090 1090 HOH HOH . C 3 HOH A 91 1091 1091 HOH HOH . C 3 HOH A 92 1092 1092 HOH HOH . C 3 HOH A 93 1093 1093 HOH HOH . C 3 HOH A 94 1094 1094 HOH HOH . C 3 HOH A 95 1095 1095 HOH HOH . C 3 HOH A 96 1096 1096 HOH HOH . C 3 HOH A 97 1097 1097 HOH HOH . C 3 HOH A 98 1098 1098 HOH HOH . C 3 HOH A 99 1099 1099 HOH HOH . C 3 HOH A 100 1100 1100 HOH HOH . C 3 HOH A 101 1101 1101 HOH HOH . C 3 HOH A 102 1102 1102 HOH HOH . C 3 HOH A 103 1103 1103 HOH HOH . C 3 HOH A 104 1104 1104 HOH HOH . C 3 HOH A 105 1105 1105 HOH HOH . C 3 HOH A 106 1106 1106 HOH HOH . C 3 HOH A 107 1107 1107 HOH HOH . C 3 HOH A 108 1108 1108 HOH HOH . C 3 HOH A 109 1109 1109 HOH HOH . C 3 HOH A 110 1110 1110 HOH HOH . C 3 HOH A 111 1111 1111 HOH HOH . C 3 HOH A 112 1112 1112 HOH HOH . C 3 HOH A 113 1113 1113 HOH HOH . C 3 HOH A 114 1114 1114 HOH HOH . C 3 HOH A 115 1115 1115 HOH HOH . C 3 HOH A 116 1116 1116 HOH HOH . C 3 HOH A 117 1117 1117 HOH HOH . C 3 HOH A 118 1118 1118 HOH HOH . C 3 HOH A 119 1119 1119 HOH HOH . C 3 HOH A 120 1120 1120 HOH HOH . C 3 HOH A 121 1121 1121 HOH HOH . C 3 HOH A 122 1122 1122 HOH HOH . C 3 HOH A 123 1123 1123 HOH HOH . C 3 HOH A 124 1124 1124 HOH HOH . C 3 HOH A 125 1125 1125 HOH HOH . C 3 HOH A 126 1126 1126 HOH HOH . C 3 HOH A 127 1127 1127 HOH HOH . C 3 HOH A 128 1128 1128 HOH HOH . C 3 HOH A 129 1129 1129 HOH HOH . C 3 HOH A 130 1130 1130 HOH HOH . C 3 HOH A 131 1131 1131 HOH HOH . C 3 HOH A 132 1132 1132 HOH HOH . C 3 HOH A 133 1133 1133 HOH HOH . C 3 HOH A 134 1134 1134 HOH HOH . C 3 HOH A 135 1135 1135 HOH HOH . C 3 HOH A 136 1136 1136 HOH HOH . C 3 HOH A 137 1137 1137 HOH HOH . C 3 HOH A 138 1138 1138 HOH HOH . C 3 HOH A 139 1139 1139 HOH HOH . C 3 HOH A 140 1140 1140 HOH HOH . C 3 HOH A 141 1141 1141 HOH HOH . C 3 HOH A 142 1142 1142 HOH HOH . C 3 HOH A 143 1143 1143 HOH HOH . C 3 HOH A 144 1144 1144 HOH HOH . C 3 HOH A 145 1145 1145 HOH HOH . C 3 HOH A 146 1146 1146 HOH HOH . C 3 HOH A 147 1147 1147 HOH HOH . C 3 HOH A 148 1148 1148 HOH HOH . C 3 HOH A 149 1149 1149 HOH HOH . C 3 HOH A 150 1150 1150 HOH HOH . C 3 HOH A 151 1151 1151 HOH HOH . C 3 HOH A 152 1152 1152 HOH HOH . C 3 HOH A 153 1153 1153 HOH HOH . C 3 HOH A 154 1154 1154 HOH HOH . C 3 HOH A 155 1155 1155 HOH HOH . C 3 HOH A 156 1156 1156 HOH HOH . C 3 HOH A 157 1157 1157 HOH HOH . C 3 HOH A 158 1158 1158 HOH HOH . C 3 HOH A 159 1159 1159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AIJ . . . B 2 31.136 -0.285 28.694 1 30.83 ? C1 AIJ 600 A 1 HETATM 2 C C2 AIJ . . . B 2 31.295 -1.719 28.153 1 30.98 ? C2 AIJ 600 A 1 HETATM 3 O O3 AIJ . . . B 2 30.063 -2.437 28.404 1 32.28 ? O3 AIJ 600 A 1 HETATM 4 C C4 AIJ . . . B 2 28.869 -1.985 27.952 1 29.9 ? C4 AIJ 600 A 1 HETATM 5 C C5 AIJ . . . B 2 27.944 -2.991 27.66 1 29.51 ? C5 AIJ 600 A 1 HETATM 6 C C6 AIJ . . . B 2 26.693 -2.655 27.163 1 31.07 ? C6 AIJ 600 A 1 HETATM 7 C C7 AIJ . . . B 2 26.351 -1.302 27.059 1 29.18 ? C7 AIJ 600 A 1 HETATM 8 O O8 AIJ . . . B 2 25.129 -1.005 26.57 1 27.75 ? O8 AIJ 600 A 1 HETATM 9 C C9 AIJ . . . B 2 27.291 -0.312 27.351 1 26.89 ? C9 AIJ 600 A 1 HETATM 10 C C10 AIJ . . . B 2 28.593 -0.626 27.734 1 29.5 ? C10 AIJ 600 A 1 HETATM 11 S S11 AIJ . . . B 2 29.623 0.454 28.071 1 32.91 ? S11 AIJ 600 A 1 HETATM 12 C C12 AIJ . . . B 2 32.433 0.438 28.415 1 34.68 ? C12 AIJ 600 A 1 HETATM 13 C C13 AIJ . . . B 2 32.662 1.284 27.315 1 30.47 ? C13 AIJ 600 A 1 HETATM 14 C C14 AIJ . . . B 2 33.91 1.873 27.147 1 30.7 ? C14 AIJ 600 A 1 HETATM 15 C C15 AIJ . . . B 2 34.942 1.648 28.087 1 34.27 ? C15 AIJ 600 A 1 HETATM 16 O O16 AIJ . . . B 2 36.145 2.238 27.974 1 38.58 ? O16 AIJ 600 A 1 HETATM 17 C C17 AIJ . . . B 2 34.71 0.831 29.204 1 36.11 ? C17 AIJ 600 A 1 HETATM 18 C C18 AIJ . . . B 2 33.453 0.237 29.356 1 34.17 ? C18 AIJ 600 A 1 HETATM 19 C C19 AIJ . . . B 2 31.652 -1.924 26.684 1 28.8 ? C19 AIJ 600 A 1 HETATM 20 C C20 AIJ . . . B 2 32.495 -2.986 26.336 1 33.76 ? C20 AIJ 600 A 1 HETATM 21 C C21 AIJ . . . B 2 32.872 -3.265 25.001 1 31.36 ? C21 AIJ 600 A 1 HETATM 22 C C22 AIJ . . . B 2 32.411 -2.452 23.948 1 34.28 ? C22 AIJ 600 A 1 HETATM 23 C C23 AIJ . . . B 2 31.563 -1.383 24.309 1 30.03 ? C23 AIJ 600 A 1 HETATM 24 C C24 AIJ . . . B 2 31.184 -1.126 25.63 1 31.84 ? C24 AIJ 600 A 1 HETATM 25 O O25 AIJ . . . B 2 32.762 -2.646 22.635 1 33.99 ? O25 AIJ 600 A 1 HETATM 26 C C26 AIJ . . . B 2 33.363 -3.918 22.285 1 38.82 ? C26 AIJ 600 A 1 HETATM 27 C C27 AIJ . . . B 2 33.817 -4.122 20.79 1 41.6 ? C27 AIJ 600 A 1 HETATM 28 C C28 AIJ . . . B 2 34.627 -2.86 20.595 1 48.88 ? C28 AIJ 600 A 1 HETATM 29 N N29 AIJ . . . B 2 32.716 -4.202 19.773 1 46.55 ? N29 AIJ 600 A 1 HETATM 30 C C30 AIJ . . . B 2 33.052 -3.917 18.33 1 50.58 ? C30 AIJ 600 A 1 HETATM 31 C C31 AIJ . . . B 2 31.755 -3.347 17.677 1 51.41 ? C31 AIJ 600 A 1 HETATM 32 C C32 AIJ . . . B 2 30.756 -3.312 18.849 1 48.29 ? C32 AIJ 600 A 1 HETATM 33 C C33 AIJ . . . B 2 31.669 -3.235 20.084 1 46.93 ? C33 AIJ 600 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #