data_1XPF # _model_server_result.job_id ZI8zq79HGb2P21tb3p7Ayg _model_server_result.datetime_utc '2024-11-09 02:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":104}' # _entry.id 1XPF # _exptl.entry_id 1XPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XPF _cell.length_a 28.364 _cell.length_b 120.209 _cell.length_c 97.969 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O2' C 1 A C 1 1_555 E NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc2 A O2 C 1 A C 1 1_555 E NA NA . A NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 A OP1 G 12 A G 12 1_555 G MG MG . A MG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 A O6 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 A N2 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 U 2 A U 2 1_555 A N1 A 22 A A 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 U 2 A U 2 1_555 A N6 A 22 A A 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 U 3 A U 3 1_555 A N1 A 21 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 U 3 A U 3 1_555 A N6 A 21 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 G 4 A G 4 1_555 A N3 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 G 4 A G 4 1_555 A O2 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 G 4 A G 4 1_555 A N4 C 20 A C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog11 A O2 C 5 A C 5 1_555 A N2 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 U 6 A U 6 1_555 A N1 A 18 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 U 6 A U 6 1_555 A N6 A 18 A A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 G 7 A G 7 1_555 A N3 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 G 7 A G 7 1_555 A O2 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 G 7 A G 7 1_555 A N4 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 G 10 A G 10 1_555 B N3 C 15 B C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 G 10 A G 10 1_555 B O2 C 15 B C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 G 10 A G 10 1_555 B N4 C 15 B C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 U 11 A U 11 1_555 B N1 A 14 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 U 11 A U 11 1_555 B N6 A 14 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 G 12 A G 12 1_555 B N3 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 G 12 A G 12 1_555 B O2 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 G 12 A G 12 1_555 B N4 C 13 B C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 C 13 A C 13 1_555 B N1 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 C 13 A C 13 1_555 B O6 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 C 13 A C 13 1_555 B N2 G 12 B G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 A 14 A A 14 1_555 B N3 U 11 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 A 14 A A 14 1_555 B O4 U 11 B U 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 C 15 A C 15 1_555 B N1 G 10 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 C 15 A C 15 1_555 B O6 G 10 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 C 15 A C 15 1_555 B N2 G 10 B G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 C 1 B C 1 1_555 B N1 G 23 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N4 C 1 B C 1 1_555 B O6 G 23 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O2 C 1 B C 1 1_555 B N2 G 23 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N3 U 2 B U 2 1_555 B N1 A 22 B A 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B O4 U 2 B U 2 1_555 B N6 A 22 B A 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 B N3 U 3 B U 3 1_555 B N1 A 21 B A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 B O4 U 3 B U 3 1_555 B N6 A 21 B A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 B N1 G 4 B G 4 1_555 B N3 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 B N2 G 4 B G 4 1_555 B O2 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 B O6 G 4 B G 4 1_555 B N4 C 20 B C 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 B N3 C 5 B C 5 1_555 B N1 G 19 B G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 B N4 C 5 B C 5 1_555 B O6 G 19 B G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 B O2 C 5 B C 5 1_555 B N2 G 19 B G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog46 B N3 U 6 B U 6 1_555 B N1 A 18 B A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 B N1 G 7 B G 7 1_555 B N3 C 17 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 B N2 G 7 B G 7 1_555 B O2 C 17 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 B O6 G 7 B G 7 1_555 B N4 C 17 B C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XPF _atom_sites.fract_transf_matrix[1][1] 0.035256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 102 102 SO4 SO4 . D 3 MG A 1 104 104 MG MG . E 4 NA A 1 105 105 NA NA . F 2 SO4 A 1 106 106 SO4 SO4 . G 3 MG A 1 107 107 MG MG . H 5 SPM A 1 108 1 SPM SPM . I 2 SO4 B 1 101 101 SO4 SO4 . J 3 MG B 1 103 103 MG MG . K 6 HOH A 1 109 2 HOH HOH . K 6 HOH A 2 110 5 HOH HOH . K 6 HOH A 3 111 6 HOH HOH . K 6 HOH A 4 112 9 HOH HOH . K 6 HOH A 5 113 12 HOH HOH . K 6 HOH A 6 114 15 HOH HOH . K 6 HOH A 7 115 17 HOH HOH . K 6 HOH A 8 116 19 HOH HOH . K 6 HOH A 9 117 20 HOH HOH . K 6 HOH A 10 118 21 HOH HOH . K 6 HOH A 11 119 23 HOH HOH . K 6 HOH A 12 120 25 HOH HOH . K 6 HOH A 13 121 26 HOH HOH . K 6 HOH A 14 122 27 HOH HOH . K 6 HOH A 15 123 28 HOH HOH . K 6 HOH A 16 124 29 HOH HOH . K 6 HOH A 17 125 30 HOH HOH . K 6 HOH A 18 126 34 HOH HOH . K 6 HOH A 19 127 36 HOH HOH . K 6 HOH A 20 128 37 HOH HOH . K 6 HOH A 21 129 39 HOH HOH . K 6 HOH A 22 130 49 HOH HOH . K 6 HOH A 23 131 51 HOH HOH . K 6 HOH A 24 132 52 HOH HOH . K 6 HOH A 25 133 54 HOH HOH . K 6 HOH A 26 134 55 HOH HOH . K 6 HOH A 27 135 57 HOH HOH . K 6 HOH A 28 136 58 HOH HOH . K 6 HOH A 29 137 59 HOH HOH . K 6 HOH A 30 138 61 HOH HOH . K 6 HOH A 31 139 62 HOH HOH . K 6 HOH A 32 140 63 HOH HOH . K 6 HOH A 33 141 64 HOH HOH . K 6 HOH A 34 142 65 HOH HOH . K 6 HOH A 35 143 66 HOH HOH . K 6 HOH A 36 144 67 HOH HOH . K 6 HOH A 37 145 69 HOH HOH . K 6 HOH A 38 146 71 HOH HOH . K 6 HOH A 39 147 73 HOH HOH . K 6 HOH A 40 148 74 HOH HOH . K 6 HOH A 41 149 77 HOH HOH . K 6 HOH A 42 150 80 HOH HOH . K 6 HOH A 43 151 81 HOH HOH . K 6 HOH A 44 152 83 HOH HOH . K 6 HOH A 45 153 86 HOH HOH . K 6 HOH A 46 154 87 HOH HOH . K 6 HOH A 47 155 90 HOH HOH . L 6 HOH B 1 104 3 HOH HOH . L 6 HOH B 2 105 7 HOH HOH . L 6 HOH B 3 106 8 HOH HOH . L 6 HOH B 4 107 10 HOH HOH . L 6 HOH B 5 108 11 HOH HOH . L 6 HOH B 6 109 14 HOH HOH . L 6 HOH B 7 110 16 HOH HOH . L 6 HOH B 8 111 18 HOH HOH . L 6 HOH B 9 112 22 HOH HOH . L 6 HOH B 10 113 24 HOH HOH . L 6 HOH B 11 114 31 HOH HOH . L 6 HOH B 12 115 32 HOH HOH . L 6 HOH B 13 116 33 HOH HOH . L 6 HOH B 14 117 38 HOH HOH . L 6 HOH B 15 118 40 HOH HOH . L 6 HOH B 16 119 41 HOH HOH . L 6 HOH B 17 120 42 HOH HOH . L 6 HOH B 18 121 43 HOH HOH . L 6 HOH B 19 122 44 HOH HOH . L 6 HOH B 20 123 45 HOH HOH . L 6 HOH B 21 124 46 HOH HOH . L 6 HOH B 22 125 47 HOH HOH . L 6 HOH B 23 126 48 HOH HOH . L 6 HOH B 24 127 50 HOH HOH . L 6 HOH B 25 128 53 HOH HOH . L 6 HOH B 26 129 56 HOH HOH . L 6 HOH B 27 130 60 HOH HOH . L 6 HOH B 28 131 68 HOH HOH . L 6 HOH B 29 132 70 HOH HOH . L 6 HOH B 30 133 72 HOH HOH . L 6 HOH B 31 134 75 HOH HOH . L 6 HOH B 32 135 76 HOH HOH . L 6 HOH B 33 136 78 HOH HOH . L 6 HOH B 34 137 79 HOH HOH . L 6 HOH B 35 138 82 HOH HOH . L 6 HOH B 36 139 84 HOH HOH . L 6 HOH B 37 140 85 HOH HOH . L 6 HOH B 38 141 88 HOH HOH . L 6 HOH B 39 142 89 HOH HOH . L 6 HOH B 40 143 91 HOH HOH . L 6 HOH B 41 144 92 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.118 _atom_site.Cartn_y 9.691 _atom_site.Cartn_z 57.642 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 104 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #