data_1XPR
#
_model_server_result.job_id            D1TZJzBkSce8hdoJUxQ2xQ 
_model_server_result.datetime_utc      '2025-02-05 06:44:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":3701}' 
#
_entry.id    1XPR 
#
_exptl.entry_id    1XPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.291 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5A-FORMYLBICYCLOMYCIN 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.16 
_cell.angle_gamma         90 
_cell.entry_id            1XPR 
_cell.length_a            210.526 
_cell.length_b            109.679 
_cell.length_c            160.046 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XPR 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
? dimeric 2 author_defined_assembly 5 
? dimeric 2 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M,N 1 1 
B,H,O,P,Q 2 1 
C,I,R,S,T 3 1 
D,J,U,V,W 4 1 
E,K,X,Y,Z 5 1 
F,L,AA,BA,CA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Q N N 
? 5 T N N 
? 5 W N N 
? 5 Z N N 
? 5 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G OG1 THR 185 A THR 185 1_555 M MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc2 N O2G AGS . A AGS 1600 1_555 M MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc3 H OG1 THR 185 B THR 185 1_555 O MG MG . B MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc4 P O2B AGS . B AGS 2600 1_555 O MG MG . B MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc5 P O2G AGS . B AGS 2600 1_555 O MG MG . B MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc6 S O2G AGS . C AGS 3600 1_555 R MG MG . C MG 3601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc7 S O2B AGS . C AGS 3600 1_555 R MG MG . C MG 3601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc8 J OG1 THR 185 D THR 185 1_555 U MG MG . D MG 4601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc9 V O2G AGS . D AGS 4600 1_555 U MG MG . D MG 4601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
metalc ? metalc10 K OG1 THR 185 E THR 185 1_555 X MG MG . E MG 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc11 Y O2G AGS . E AGS 5600 1_555 X MG MG . E MG 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc12 L OG1 THR 185 F THR 185 1_555 AA MG MG . F MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc13 L OE1 GLU 215 F GLU 215 1_555 AA MG MG . F MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc14 BA O2G AGS . F AGS 6600 1_555 AA MG MG . F MG 6601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
#
_chem_comp.formula           'C13 H18 N2 O8' 
_chem_comp.formula_weight    330.291 
_chem_comp.id                FB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5A-FORMYLBICYCLOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C12 FB doub 168 n n 
C12 C5A FB sing 169 n n 
C12 H12 FB sing 170 n n 
C5A C5 FB doub 171 z n 
C5A H5A FB sing 172 n n 
C5 C6 FB sing 173 n n 
C5 C4 FB sing 174 n n 
C6 O6 FB sing 175 n n 
C6 N10 FB sing 176 n n 
C6 C7 FB sing 177 n n 
O6 HO6 FB sing 178 n n 
N10 C9 FB sing 179 n n 
N10 H10 FB sing 180 n n 
C9 O9 FB doub 181 n n 
C9 C1 FB sing 182 n n 
C4 C3 FB sing 183 n n 
C4 H41 FB sing 184 n n 
C4 H42 FB sing 185 n n 
C3 O2 FB sing 186 n n 
C3 H31 FB sing 187 n n 
C3 H32 FB sing 188 n n 
O2 C1 FB sing 189 n n 
C1 N8 FB sing 190 n n 
C1 C1A FB sing 191 n n 
N8 C7 FB sing 192 n n 
N8 HN8 FB sing 193 n n 
C7 O7 FB doub 194 n n 
C1A O1A FB sing 195 n n 
C1A C2A FB sing 196 n n 
C1A H1A FB sing 197 n n 
O1A H1O FB sing 198 n n 
C2A C2B FB sing 199 n n 
C2A O2A FB sing 200 n n 
C2A C3A FB sing 201 n n 
C2B HB1 FB sing 202 n n 
C2B HB2 FB sing 203 n n 
C2B HB3 FB sing 204 n n 
O2A H2O FB sing 205 n n 
C3A O3A FB sing 206 n n 
C3A HA1 FB sing 207 n n 
C3A HA2 FB sing 208 n n 
O3A H3O FB sing 209 n n 
#
_atom_sites.entry_id                     1XPR 
_atom_sites.fract_transf_matrix[1][1]    0.00475 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001558 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009118 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 MG A 1 1601 1601 MG MG . 
N 4 AGS A 1 1600 1600 AGS AGS . 
O 3 MG B 1 2601 2601 MG MG . 
P 4 AGS B 1 2600 2600 AGS AGS . 
Q 5 FB B 1 2701 2701 FB FB . 
R 3 MG C 1 3601 3601 MG MG . 
S 4 AGS C 1 3600 3600 AGS AGS . 
T 5 FB C 1 3701 3701 FB FB . 
U 3 MG D 1 4601 4601 MG MG . 
V 4 AGS D 1 4600 4600 AGS AGS . 
W 5 FB D 1 4701 4701 FB FB . 
X 3 MG E 1 5601 5601 MG MG . 
Y 4 AGS E 1 5600 5600 AGS AGS . 
Z 5 FB E 1 5701 5701 FB FB . 
AA 3 MG F 1 6601 6601 MG MG . 
BA 4 AGS F 1 6600 6600 AGS AGS . 
CA 5 FB F 1 6701 6701 FB FB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 FB . . . T 5 3.024 12.387 41.47 1 11.99 ? O12 FB 3701 C 1 
HETATM 2 C C12 FB . . . T 5 2.103 13.226 41.606 1 43.06 ? C12 FB 3701 C 1 
HETATM 3 C C5A FB . . . T 5 1.521 14.335 41.51 1 43.34 ? C5A FB 3701 C 1 
HETATM 4 C C5 FB . . . T 5 1.332 15.553 41.223 1 43.66 ? C5 FB 3701 C 1 
HETATM 5 C C6 FB . . . T 5 2.5 16.264 40.576 1 43.87 ? C6 FB 3701 C 1 
HETATM 6 O O6 FB . . . T 5 3.754 15.581 40.794 1 53.17 ? O6 FB 3701 C 1 
HETATM 7 N N10 FB . . . T 5 2.461 17.581 41.182 1 43.72 ? N10 FB 3701 C 1 
HETATM 8 C C9 FB . . . T 5 1.865 18.625 40.631 1 43.59 ? C9 FB 3701 C 1 
HETATM 9 O O9 FB . . . T 5 1.745 19.662 41.261 1 43.88 ? O9 FB 3701 C 1 
HETATM 10 C C4 FB . . . T 5 0.014 16.317 41.436 1 43.66 ? C4 FB 3701 C 1 
HETATM 11 C C3 FB . . . T 5 -0.555 16.902 40.115 1 43.63 ? C3 FB 3701 C 1 
HETATM 12 O O2 FB . . . T 5 -0.178 18.256 39.723 1 43.44 ? O2 FB 3701 C 1 
HETATM 13 C C1 FB . . . T 5 1.185 18.42 39.285 1 43.52 ? C1 FB 3701 C 1 
HETATM 14 N N8 FB . . . T 5 1.427 17.159 38.61 1 43.62 ? N8 FB 3701 C 1 
HETATM 15 C C7 FB . . . T 5 2.039 16.126 39.149 1 43.91 ? C7 FB 3701 C 1 
HETATM 16 O O7 FB . . . T 5 2.101 15.045 38.587 1 53.27 ? O7 FB 3701 C 1 
HETATM 17 C C1A FB . . . T 5 1.366 19.505 38.206 1 43.53 ? C1A FB 3701 C 1 
HETATM 18 O O1A FB . . . T 5 0.601 19.102 37.072 1 43.76 ? O1A FB 3701 C 1 
HETATM 19 C C2A FB . . . T 5 0.981 20.949 38.558 1 43.42 ? C2A FB 3701 C 1 
HETATM 20 C C2B FB . . . T 5 0.142 21.557 37.448 1 43.43 ? C2B FB 3701 C 1 
HETATM 21 O O2A FB . . . T 5 0.179 21.018 39.74 1 43.54 ? O2A FB 3701 C 1 
HETATM 22 C C3A FB . . . T 5 2.239 21.789 38.751 1 43.07 ? C3A FB 3701 C 1 
HETATM 23 O O3A FB . . . T 5 2.808 22.118 37.487 1 11.65 ? O3A FB 3701 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#