data_1XQP # _model_server_result.job_id VrKOXVNqqTY4wDSJmBg24w _model_server_result.datetime_utc '2024-10-18 21:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":258}' # _entry.id 1XQP # _exptl.entry_id 1XQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXY-8-OXOGUANOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XQP _cell.length_a 72.22 _cell.length_b 98.11 _cell.length_c 36.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 85 A CYS 85 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 181 A CYS 181 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id 8HG _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXY-8-OXOGUANOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XQP _atom_sites.fract_transf_matrix[1][1] 0.013847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8HG A 1 257 255 8HG 8HG . C 2 8HG A 1 258 256 8HG 8HG . D 3 HOH A 1 259 257 HOH HOH . D 3 HOH A 2 260 258 HOH HOH . D 3 HOH A 3 261 259 HOH HOH . D 3 HOH A 4 262 260 HOH HOH . D 3 HOH A 5 263 261 HOH HOH . D 3 HOH A 6 264 262 HOH HOH . D 3 HOH A 7 265 263 HOH HOH . D 3 HOH A 8 266 264 HOH HOH . D 3 HOH A 9 267 265 HOH HOH . D 3 HOH A 10 268 266 HOH HOH . D 3 HOH A 11 269 267 HOH HOH . D 3 HOH A 12 270 268 HOH HOH . D 3 HOH A 13 271 269 HOH HOH . D 3 HOH A 14 272 270 HOH HOH . D 3 HOH A 15 273 271 HOH HOH . D 3 HOH A 16 274 272 HOH HOH . D 3 HOH A 17 275 273 HOH HOH . D 3 HOH A 18 276 274 HOH HOH . D 3 HOH A 19 277 275 HOH HOH . D 3 HOH A 20 278 276 HOH HOH . D 3 HOH A 21 279 277 HOH HOH . D 3 HOH A 22 280 278 HOH HOH . D 3 HOH A 23 281 279 HOH HOH . D 3 HOH A 24 282 280 HOH HOH . D 3 HOH A 25 283 281 HOH HOH . D 3 HOH A 26 284 282 HOH HOH . D 3 HOH A 27 285 283 HOH HOH . D 3 HOH A 28 286 284 HOH HOH . D 3 HOH A 29 287 285 HOH HOH . D 3 HOH A 30 288 286 HOH HOH . D 3 HOH A 31 289 287 HOH HOH . D 3 HOH A 32 290 288 HOH HOH . D 3 HOH A 33 291 289 HOH HOH . D 3 HOH A 34 292 290 HOH HOH . D 3 HOH A 35 293 291 HOH HOH . D 3 HOH A 36 294 292 HOH HOH . D 3 HOH A 37 295 293 HOH HOH . D 3 HOH A 38 296 294 HOH HOH . D 3 HOH A 39 297 296 HOH HOH . D 3 HOH A 40 298 297 HOH HOH . D 3 HOH A 41 299 298 HOH HOH . D 3 HOH A 42 300 299 HOH HOH . D 3 HOH A 43 301 300 HOH HOH . D 3 HOH A 44 302 301 HOH HOH . D 3 HOH A 45 303 302 HOH HOH . D 3 HOH A 46 304 303 HOH HOH . D 3 HOH A 47 305 304 HOH HOH . D 3 HOH A 48 306 305 HOH HOH . D 3 HOH A 49 307 306 HOH HOH . D 3 HOH A 50 308 307 HOH HOH . D 3 HOH A 51 309 308 HOH HOH . D 3 HOH A 52 310 309 HOH HOH . D 3 HOH A 53 311 310 HOH HOH . D 3 HOH A 54 312 311 HOH HOH . D 3 HOH A 55 313 312 HOH HOH . D 3 HOH A 56 314 313 HOH HOH . D 3 HOH A 57 315 314 HOH HOH . D 3 HOH A 58 316 315 HOH HOH . D 3 HOH A 59 317 316 HOH HOH . D 3 HOH A 60 318 317 HOH HOH . D 3 HOH A 61 319 318 HOH HOH . D 3 HOH A 62 320 319 HOH HOH . D 3 HOH A 63 321 320 HOH HOH . D 3 HOH A 64 322 321 HOH HOH . D 3 HOH A 65 323 322 HOH HOH . D 3 HOH A 66 324 323 HOH HOH . D 3 HOH A 67 325 324 HOH HOH . D 3 HOH A 68 326 325 HOH HOH . D 3 HOH A 69 327 326 HOH HOH . D 3 HOH A 70 328 327 HOH HOH . D 3 HOH A 71 329 328 HOH HOH . D 3 HOH A 72 330 329 HOH HOH . D 3 HOH A 73 331 330 HOH HOH . D 3 HOH A 74 332 331 HOH HOH . D 3 HOH A 75 333 332 HOH HOH . D 3 HOH A 76 334 333 HOH HOH . D 3 HOH A 77 335 334 HOH HOH . D 3 HOH A 78 336 335 HOH HOH . D 3 HOH A 79 337 336 HOH HOH . D 3 HOH A 80 338 337 HOH HOH . D 3 HOH A 81 339 338 HOH HOH . D 3 HOH A 82 340 339 HOH HOH . D 3 HOH A 83 341 340 HOH HOH . D 3 HOH A 84 342 341 HOH HOH . D 3 HOH A 85 343 342 HOH HOH . D 3 HOH A 86 344 343 HOH HOH . D 3 HOH A 87 345 344 HOH HOH . D 3 HOH A 88 346 345 HOH HOH . D 3 HOH A 89 347 346 HOH HOH . D 3 HOH A 90 348 347 HOH HOH . D 3 HOH A 91 349 348 HOH HOH . D 3 HOH A 92 350 349 HOH HOH . D 3 HOH A 93 351 350 HOH HOH . D 3 HOH A 94 352 351 HOH HOH . D 3 HOH A 95 353 352 HOH HOH . D 3 HOH A 96 354 353 HOH HOH . D 3 HOH A 97 355 354 HOH HOH . D 3 HOH A 98 356 355 HOH HOH . D 3 HOH A 99 357 356 HOH HOH . D 3 HOH A 100 358 358 HOH HOH . D 3 HOH A 101 359 359 HOH HOH . D 3 HOH A 102 360 360 HOH HOH . D 3 HOH A 103 361 361 HOH HOH . D 3 HOH A 104 362 362 HOH HOH . D 3 HOH A 105 363 363 HOH HOH . D 3 HOH A 106 364 364 HOH HOH . D 3 HOH A 107 365 365 HOH HOH . D 3 HOH A 108 366 366 HOH HOH . D 3 HOH A 109 367 368 HOH HOH . D 3 HOH A 110 368 369 HOH HOH . D 3 HOH A 111 369 370 HOH HOH . D 3 HOH A 112 370 371 HOH HOH . D 3 HOH A 113 371 372 HOH HOH . D 3 HOH A 114 372 373 HOH HOH . D 3 HOH A 115 373 374 HOH HOH . D 3 HOH A 116 374 375 HOH HOH . D 3 HOH A 117 375 376 HOH HOH . D 3 HOH A 118 376 377 HOH HOH . D 3 HOH A 119 377 378 HOH HOH . D 3 HOH A 120 378 379 HOH HOH . D 3 HOH A 121 379 380 HOH HOH . D 3 HOH A 122 380 381 HOH HOH . D 3 HOH A 123 381 382 HOH HOH . D 3 HOH A 124 382 383 HOH HOH . D 3 HOH A 125 383 384 HOH HOH . D 3 HOH A 126 384 385 HOH HOH . D 3 HOH A 127 385 386 HOH HOH . D 3 HOH A 128 386 387 HOH HOH . D 3 HOH A 129 387 388 HOH HOH . D 3 HOH A 130 388 389 HOH HOH . D 3 HOH A 131 389 390 HOH HOH . D 3 HOH A 132 390 391 HOH HOH . D 3 HOH A 133 391 392 HOH HOH . D 3 HOH A 134 392 393 HOH HOH . D 3 HOH A 135 393 394 HOH HOH . D 3 HOH A 136 394 395 HOH HOH . D 3 HOH A 137 395 396 HOH HOH . D 3 HOH A 138 396 397 HOH HOH . D 3 HOH A 139 397 398 HOH HOH . D 3 HOH A 140 398 399 HOH HOH . D 3 HOH A 141 399 400 HOH HOH . D 3 HOH A 142 400 401 HOH HOH . D 3 HOH A 143 401 402 HOH HOH . D 3 HOH A 144 402 403 HOH HOH . D 3 HOH A 145 403 404 HOH HOH . D 3 HOH A 146 404 405 HOH HOH . D 3 HOH A 147 405 406 HOH HOH . D 3 HOH A 148 406 407 HOH HOH . D 3 HOH A 149 407 408 HOH HOH . D 3 HOH A 150 408 409 HOH HOH . D 3 HOH A 151 409 410 HOH HOH . D 3 HOH A 152 410 411 HOH HOH . D 3 HOH A 153 411 412 HOH HOH . D 3 HOH A 154 412 413 HOH HOH . D 3 HOH A 155 413 414 HOH HOH . D 3 HOH A 156 414 415 HOH HOH . D 3 HOH A 157 415 416 HOH HOH . D 3 HOH A 158 416 417 HOH HOH . D 3 HOH A 159 417 418 HOH HOH . D 3 HOH A 160 418 419 HOH HOH . D 3 HOH A 161 419 420 HOH HOH . D 3 HOH A 162 420 421 HOH HOH . D 3 HOH A 163 421 422 HOH HOH . D 3 HOH A 164 422 423 HOH HOH . D 3 HOH A 165 423 424 HOH HOH . D 3 HOH A 166 424 425 HOH HOH . D 3 HOH A 167 425 426 HOH HOH . D 3 HOH A 168 426 427 HOH HOH . D 3 HOH A 169 427 428 HOH HOH . D 3 HOH A 170 428 429 HOH HOH . D 3 HOH A 171 429 430 HOH HOH . D 3 HOH A 172 430 431 HOH HOH . D 3 HOH A 173 431 432 HOH HOH . D 3 HOH A 174 432 433 HOH HOH . D 3 HOH A 175 433 434 HOH HOH . D 3 HOH A 176 434 435 HOH HOH . D 3 HOH A 177 435 436 HOH HOH . D 3 HOH A 178 436 437 HOH HOH . D 3 HOH A 179 437 438 HOH HOH . D 3 HOH A 180 438 439 HOH HOH . D 3 HOH A 181 439 440 HOH HOH . D 3 HOH A 182 440 441 HOH HOH . D 3 HOH A 183 441 442 HOH HOH . D 3 HOH A 184 442 443 HOH HOH . D 3 HOH A 185 443 444 HOH HOH . D 3 HOH A 186 444 445 HOH HOH . D 3 HOH A 187 445 446 HOH HOH . D 3 HOH A 188 446 447 HOH HOH . D 3 HOH A 189 447 448 HOH HOH . D 3 HOH A 190 448 449 HOH HOH . D 3 HOH A 191 449 450 HOH HOH . D 3 HOH A 192 450 451 HOH HOH . D 3 HOH A 193 451 452 HOH HOH . D 3 HOH A 194 452 453 HOH HOH . D 3 HOH A 195 453 454 HOH HOH . D 3 HOH A 196 454 455 HOH HOH . D 3 HOH A 197 455 456 HOH HOH . D 3 HOH A 198 456 457 HOH HOH . D 3 HOH A 199 457 458 HOH HOH . D 3 HOH A 200 458 459 HOH HOH . D 3 HOH A 201 459 460 HOH HOH . D 3 HOH A 202 460 461 HOH HOH . D 3 HOH A 203 461 462 HOH HOH . D 3 HOH A 204 462 463 HOH HOH . D 3 HOH A 205 463 464 HOH HOH . D 3 HOH A 206 464 465 HOH HOH . D 3 HOH A 207 465 466 HOH HOH . D 3 HOH A 208 466 467 HOH HOH . D 3 HOH A 209 467 468 HOH HOH . D 3 HOH A 210 468 469 HOH HOH . D 3 HOH A 211 469 470 HOH HOH . D 3 HOH A 212 470 471 HOH HOH . D 3 HOH A 213 471 472 HOH HOH . D 3 HOH A 214 472 473 HOH HOH . D 3 HOH A 215 473 474 HOH HOH . D 3 HOH A 216 474 475 HOH HOH . D 3 HOH A 217 475 476 HOH HOH . D 3 HOH A 218 476 479 HOH HOH . D 3 HOH A 219 477 480 HOH HOH . D 3 HOH A 220 478 481 HOH HOH . D 3 HOH A 221 479 482 HOH HOH . D 3 HOH A 222 480 483 HOH HOH . D 3 HOH A 223 481 484 HOH HOH . D 3 HOH A 224 482 485 HOH HOH . D 3 HOH A 225 483 486 HOH HOH . D 3 HOH A 226 484 487 HOH HOH . D 3 HOH A 227 485 488 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 8HG . . . C 2 0.44 49.381 30.172 0.5 29.67 ? O6 8HG 258 A 1 HETATM 2 C C6 8HG . . . C 2 0.81 49.392 31.353 0.5 28.88 ? C6 8HG 258 A 1 HETATM 3 N N1 8HG . . . C 2 2.156 49.669 31.742 0.5 29.38 ? N1 8HG 258 A 1 HETATM 4 C C2 8HG . . . C 2 2.542 49.675 33.117 0.5 28.83 ? C2 8HG 258 A 1 HETATM 5 N N2 8HG . . . C 2 3.883 49.947 33.323 0.5 29.76 ? N2 8HG 258 A 1 HETATM 6 N N3 8HG . . . C 2 1.74 49.454 34.116 0.5 28.53 ? N3 8HG 258 A 1 HETATM 7 C C4 8HG . . . C 2 0.467 49.188 33.816 0.5 27.78 ? C4 8HG 258 A 1 HETATM 8 C C5 8HG . . . C 2 -0.026 49.169 32.515 0.5 28.29 ? C5 8HG 258 A 1 HETATM 9 N N7 8HG . . . C 2 -1.415 48.844 32.653 0.5 28.71 ? N7 8HG 258 A 1 HETATM 10 C C8 8HG . . . C 2 -1.706 48.707 34.055 0.5 28.92 ? C8 8HG 258 A 1 HETATM 11 O O20 8HG . . . C 2 -2.796 48.441 34.586 0.5 28.93 ? O20 8HG 258 A 1 HETATM 12 N N9 8HG . . . C 2 -0.544 48.911 34.812 0.5 28.99 ? N9 8HG 258 A 1 HETATM 13 C C1' 8HG . . . C 2 -0.534 48.838 36.316 0.5 29.65 ? C1' 8HG 258 A 1 HETATM 14 O O4' 8HG . . . C 2 -0.573 50.104 36.959 0.5 30.11 ? O4' 8HG 258 A 1 HETATM 15 C C2' 8HG . . . C 2 0.637 48.147 36.998 0.5 30.46 ? C2' 8HG 258 A 1 HETATM 16 C C3' 8HG . . . C 2 0.586 48.643 38.442 0.5 31.5 ? C3' 8HG 258 A 1 HETATM 17 O O3' 8HG . . . C 2 -0.28 47.891 39.242 0.5 32.78 ? O3' 8HG 258 A 1 HETATM 18 C C4' 8HG . . . C 2 0.07 50.061 38.254 0.5 31.33 ? C4' 8HG 258 A 1 HETATM 19 C C5' 8HG . . . C 2 1.29 50.987 38.334 0.5 31.44 ? C5' 8HG 258 A 1 HETATM 20 O O5' 8HG . . . C 2 1.795 51.065 39.602 0.5 32.66 ? O5' 8HG 258 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #