data_1XQS # _model_server_result.job_id 6cug38UEBoQxLNjCJljz-A _model_server_result.datetime_utc '2024-11-08 16:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 1XQS # _exptl.entry_id 1XQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XQS _cell.length_a 73.484 _cell.length_b 94.809 _cell.length_c 155.704 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1XQS _atom_sites.fract_transf_matrix[1][1] 0.013608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP C 1 401 401 AMP ANP . F 3 AMP D 1 402 402 AMP ANP . G 4 HOH A 1 505 505 HOH HOH . G 4 HOH A 2 506 506 HOH HOH . G 4 HOH A 3 508 508 HOH HOH . G 4 HOH A 4 509 509 HOH HOH . G 4 HOH A 5 513 513 HOH HOH . G 4 HOH A 6 516 516 HOH HOH . G 4 HOH A 7 518 518 HOH HOH . G 4 HOH A 8 519 519 HOH HOH . G 4 HOH A 9 524 524 HOH HOH . G 4 HOH A 10 528 528 HOH HOH . G 4 HOH A 11 536 536 HOH HOH . G 4 HOH A 12 537 537 HOH HOH . G 4 HOH A 13 542 542 HOH HOH . G 4 HOH A 14 543 543 HOH HOH . G 4 HOH A 15 544 544 HOH HOH . G 4 HOH A 16 548 548 HOH HOH . G 4 HOH A 17 550 550 HOH HOH . G 4 HOH A 18 551 551 HOH HOH . H 4 HOH B 1 517 517 HOH HOH . H 4 HOH B 2 520 520 HOH HOH . H 4 HOH B 3 521 521 HOH HOH . H 4 HOH B 4 531 531 HOH HOH . H 4 HOH B 5 533 533 HOH HOH . H 4 HOH B 6 546 546 HOH HOH . I 4 HOH C 1 501 501 HOH HOH . I 4 HOH C 2 507 507 HOH HOH . I 4 HOH C 3 510 510 HOH HOH . I 4 HOH C 4 511 511 HOH HOH . I 4 HOH C 5 512 512 HOH HOH . I 4 HOH C 6 514 514 HOH HOH . I 4 HOH C 7 523 523 HOH HOH . I 4 HOH C 8 525 525 HOH HOH . I 4 HOH C 9 527 527 HOH HOH . I 4 HOH C 10 532 532 HOH HOH . I 4 HOH C 11 534 534 HOH HOH . I 4 HOH C 12 535 535 HOH HOH . I 4 HOH C 13 539 539 HOH HOH . I 4 HOH C 14 540 540 HOH HOH . I 4 HOH C 15 541 541 HOH HOH . I 4 HOH C 16 545 545 HOH HOH . I 4 HOH C 17 547 547 HOH HOH . I 4 HOH C 18 552 552 HOH HOH . J 4 HOH D 1 502 502 HOH HOH . J 4 HOH D 2 503 503 HOH HOH . J 4 HOH D 3 504 504 HOH HOH . J 4 HOH D 4 515 515 HOH HOH . J 4 HOH D 5 522 522 HOH HOH . J 4 HOH D 6 526 526 HOH HOH . J 4 HOH D 7 529 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 3 5.032 13.48 32.158 1 100.29 ? P AMP 401 C 1 HETATM 2 O O1P AMP . . . E 3 5.099 12.265 32.974 1 99.3 ? O1P AMP 401 C 1 HETATM 3 O O2P AMP . . . E 3 4.84 13.294 30.651 1 98.74 ? O2P AMP 401 C 1 HETATM 4 O O3P AMP . . . E 3 3.833 14.504 32.77 1 99.3 ? O3P AMP 401 C 1 HETATM 5 O O5' AMP . . . E 3 6.431 14.304 32.463 1 97.25 ? O5' AMP 401 C 1 HETATM 6 C C5' AMP . . . E 3 6.782 15.6 31.857 1 92.55 ? C5' AMP 401 C 1 HETATM 7 C C4' AMP . . . E 3 8.159 16.049 32.366 1 89.28 ? C4' AMP 401 C 1 HETATM 8 O O4' AMP . . . E 3 9.16 15.086 31.937 1 88.1 ? O4' AMP 401 C 1 HETATM 9 C C3' AMP . . . E 3 8.685 17.421 31.827 1 88.02 ? C3' AMP 401 C 1 HETATM 10 O O3' AMP . . . E 3 9.363 18.238 32.817 1 87.39 ? O3' AMP 401 C 1 HETATM 11 C C2' AMP . . . E 3 9.518 16.978 30.692 1 86.09 ? C2' AMP 401 C 1 HETATM 12 O O2' AMP . . . E 3 10.398 17.998 30.262 1 86.69 ? O2' AMP 401 C 1 HETATM 13 C C1' AMP . . . E 3 10.2 15.765 31.217 1 85.32 ? C1' AMP 401 C 1 HETATM 14 N N9 AMP . . . E 3 10.727 14.913 30.124 1 81.59 ? N9 AMP 401 C 1 HETATM 15 C C8 AMP . . . E 3 10.079 14.344 29.034 1 80.45 ? C8 AMP 401 C 1 HETATM 16 N N7 AMP . . . E 3 10.819 13.665 28.258 1 79.27 ? N7 AMP 401 C 1 HETATM 17 C C5 AMP . . . E 3 12.054 13.753 28.84 1 79.81 ? C5 AMP 401 C 1 HETATM 18 C C6 AMP . . . E 3 13.378 13.231 28.486 1 79.86 ? C6 AMP 401 C 1 HETATM 19 N N6 AMP . . . E 3 13.559 12.469 27.391 1 77.21 ? N6 AMP 401 C 1 HETATM 20 N N1 AMP . . . E 3 14.501 13.532 29.353 1 79.25 ? N1 AMP 401 C 1 HETATM 21 C C2 AMP . . . E 3 14.324 14.319 30.482 1 78.06 ? C2 AMP 401 C 1 HETATM 22 N N3 AMP . . . E 3 13.12 14.852 30.876 1 79.55 ? N3 AMP 401 C 1 HETATM 23 C C4 AMP . . . E 3 12.023 14.537 29.993 1 79.78 ? C4 AMP 401 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #