data_1XR2 # _model_server_result.job_id pZ9isZPfbXAnYQqqnRMMXg _model_server_result.datetime_utc '2024-11-26 22:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1205}' # _entry.id 1XR2 # _exptl.entry_id 1XR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MESO-ERYTHRITOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XR2 _cell.length_a 164.058 _cell.length_b 159.011 _cell.length_c 64.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 652 A CYS 620 1_555 A SG CYS 736 A CYS 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 652 B CYS 620 1_555 B SG CYS 736 B CYS 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C4 H10 O4' _chem_comp.formula_weight 122.12 _chem_comp.id MRY _chem_comp.mon_nstd_flag . _chem_comp.name MESO-ERYTHRITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CAA MRY sing 297 n n OAB HAB MRY sing 298 n n CAA CAC MRY sing 299 n n CAA HAA1 MRY sing 300 n n CAA HAA2 MRY sing 301 n n CAC OAD MRY sing 302 n n CAC CAE MRY sing 303 n n CAC HAC MRY sing 304 n n OAD HAD MRY sing 305 n n CAE OAF MRY sing 306 n n CAE CAG MRY sing 307 n n CAE HAE MRY sing 308 n n OAF HAF MRY sing 309 n n CAG OAH MRY sing 310 n n CAG HAG1 MRY sing 311 n n CAG HAG2 MRY sing 312 n n OAH HAH MRY sing 313 n n # _atom_sites.entry_id 1XR2 _atom_sites.fract_transf_matrix[1][1] 0.006095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 1202 1202 SO4 SO4 . D 3 C2F A 1 1200 1200 C2F C2F . E 4 MRY A 1 1205 1205 MRY MRY . F 2 SO4 B 1 1203 1203 SO4 SO4 . G 4 MRY B 1 1204 1204 MRY MRY . H 3 C2F B 1 1201 1201 C2F C2F . I 5 HOH A 1 801 801 HOH HOH . I 5 HOH A 2 802 802 HOH HOH . I 5 HOH A 3 803 803 HOH HOH . I 5 HOH A 4 804 804 HOH HOH . I 5 HOH A 5 805 805 HOH HOH . I 5 HOH A 6 806 806 HOH HOH . I 5 HOH A 7 807 807 HOH HOH . I 5 HOH A 8 808 808 HOH HOH . I 5 HOH A 9 809 809 HOH HOH . I 5 HOH A 10 810 810 HOH HOH . I 5 HOH A 11 811 811 HOH HOH . I 5 HOH A 12 812 812 HOH HOH . I 5 HOH A 13 813 813 HOH HOH . I 5 HOH A 14 814 814 HOH HOH . I 5 HOH A 15 815 815 HOH HOH . I 5 HOH A 16 816 816 HOH HOH . I 5 HOH A 17 817 817 HOH HOH . I 5 HOH A 18 818 818 HOH HOH . I 5 HOH A 19 819 819 HOH HOH . I 5 HOH A 20 820 820 HOH HOH . I 5 HOH A 21 821 821 HOH HOH . I 5 HOH A 22 822 822 HOH HOH . I 5 HOH A 23 823 823 HOH HOH . I 5 HOH A 24 824 824 HOH HOH . I 5 HOH A 25 825 825 HOH HOH . I 5 HOH A 26 826 826 HOH HOH . I 5 HOH A 27 827 827 HOH HOH . I 5 HOH A 28 828 828 HOH HOH . I 5 HOH A 29 829 829 HOH HOH . I 5 HOH A 30 831 831 HOH HOH . I 5 HOH A 31 832 832 HOH HOH . I 5 HOH A 32 834 834 HOH HOH . I 5 HOH A 33 835 835 HOH HOH . I 5 HOH A 34 887 887 HOH HOH . I 5 HOH A 35 888 888 HOH HOH . I 5 HOH A 36 889 889 HOH HOH . I 5 HOH A 37 891 891 HOH HOH . I 5 HOH A 38 892 892 HOH HOH . I 5 HOH A 39 893 893 HOH HOH . I 5 HOH A 40 894 894 HOH HOH . I 5 HOH A 41 895 895 HOH HOH . I 5 HOH A 42 896 896 HOH HOH . I 5 HOH A 43 897 897 HOH HOH . I 5 HOH A 44 898 898 HOH HOH . I 5 HOH A 45 899 899 HOH HOH . I 5 HOH A 46 900 900 HOH HOH . I 5 HOH A 47 901 901 HOH HOH . I 5 HOH A 48 902 902 HOH HOH . I 5 HOH A 49 903 903 HOH HOH . I 5 HOH A 50 904 904 HOH HOH . I 5 HOH A 51 905 905 HOH HOH . I 5 HOH A 52 906 906 HOH HOH . I 5 HOH A 53 907 907 HOH HOH . I 5 HOH A 54 908 908 HOH HOH . I 5 HOH A 55 909 909 HOH HOH . I 5 HOH A 56 910 910 HOH HOH . I 5 HOH A 57 911 911 HOH HOH . I 5 HOH A 58 912 912 HOH HOH . I 5 HOH A 59 913 913 HOH HOH . I 5 HOH A 60 923 923 HOH HOH . I 5 HOH A 61 924 924 HOH HOH . I 5 HOH A 62 933 933 HOH HOH . I 5 HOH A 63 934 934 HOH HOH . I 5 HOH A 64 935 935 HOH HOH . I 5 HOH A 65 936 936 HOH HOH . I 5 HOH A 66 937 937 HOH HOH . I 5 HOH A 67 938 938 HOH HOH . I 5 HOH A 68 939 939 HOH HOH . I 5 HOH A 69 943 943 HOH HOH . I 5 HOH A 70 946 946 HOH HOH . I 5 HOH A 71 949 949 HOH HOH . I 5 HOH A 72 972 972 HOH HOH . I 5 HOH A 73 973 973 HOH HOH . I 5 HOH A 74 974 974 HOH HOH . I 5 HOH A 75 975 975 HOH HOH . I 5 HOH A 76 976 976 HOH HOH . I 5 HOH A 77 977 977 HOH HOH . I 5 HOH A 78 978 978 HOH HOH . I 5 HOH A 79 979 979 HOH HOH . I 5 HOH A 80 980 980 HOH HOH . I 5 HOH A 81 981 981 HOH HOH . I 5 HOH A 82 982 982 HOH HOH . I 5 HOH A 83 983 983 HOH HOH . I 5 HOH A 84 984 984 HOH HOH . I 5 HOH A 85 985 985 HOH HOH . I 5 HOH A 86 986 986 HOH HOH . I 5 HOH A 87 987 987 HOH HOH . I 5 HOH A 88 988 988 HOH HOH . I 5 HOH A 89 989 989 HOH HOH . I 5 HOH A 90 990 990 HOH HOH . I 5 HOH A 91 991 991 HOH HOH . I 5 HOH A 92 992 992 HOH HOH . I 5 HOH A 93 993 993 HOH HOH . I 5 HOH A 94 994 994 HOH HOH . I 5 HOH A 95 995 995 HOH HOH . I 5 HOH A 96 996 996 HOH HOH . I 5 HOH A 97 997 997 HOH HOH . I 5 HOH A 98 998 998 HOH HOH . I 5 HOH A 99 999 999 HOH HOH . I 5 HOH A 100 1000 1000 HOH HOH . I 5 HOH A 101 1001 1001 HOH HOH . I 5 HOH A 102 1002 1002 HOH HOH . I 5 HOH A 103 1003 1003 HOH HOH . I 5 HOH A 104 1004 1004 HOH HOH . I 5 HOH A 105 1005 1005 HOH HOH . I 5 HOH A 106 1006 1006 HOH HOH . I 5 HOH A 107 1007 1007 HOH HOH . I 5 HOH A 108 1008 1008 HOH HOH . I 5 HOH A 109 1009 1009 HOH HOH . I 5 HOH A 110 1010 1010 HOH HOH . I 5 HOH A 111 1011 1011 HOH HOH . I 5 HOH A 112 1012 1012 HOH HOH . I 5 HOH A 113 1013 1013 HOH HOH . I 5 HOH A 114 1017 1017 HOH HOH . I 5 HOH A 115 1018 1018 HOH HOH . I 5 HOH A 116 1019 1019 HOH HOH . I 5 HOH A 117 1020 1020 HOH HOH . I 5 HOH A 118 1021 1021 HOH HOH . I 5 HOH A 119 1022 1022 HOH HOH . I 5 HOH A 120 1023 1023 HOH HOH . I 5 HOH A 121 1033 1033 HOH HOH . I 5 HOH A 122 1034 1034 HOH HOH . I 5 HOH A 123 1035 1035 HOH HOH . I 5 HOH A 124 1036 1036 HOH HOH . J 5 HOH B 1 800 800 HOH HOH . J 5 HOH B 2 830 830 HOH HOH . J 5 HOH B 3 833 833 HOH HOH . J 5 HOH B 4 836 836 HOH HOH . J 5 HOH B 5 837 837 HOH HOH . J 5 HOH B 6 838 838 HOH HOH . J 5 HOH B 7 839 839 HOH HOH . J 5 HOH B 8 840 840 HOH HOH . J 5 HOH B 9 841 841 HOH HOH . J 5 HOH B 10 842 842 HOH HOH . J 5 HOH B 11 843 843 HOH HOH . J 5 HOH B 12 844 844 HOH HOH . J 5 HOH B 13 845 845 HOH HOH . J 5 HOH B 14 846 846 HOH HOH . J 5 HOH B 15 847 847 HOH HOH . J 5 HOH B 16 848 848 HOH HOH . J 5 HOH B 17 849 849 HOH HOH . J 5 HOH B 18 850 850 HOH HOH . J 5 HOH B 19 851 851 HOH HOH . J 5 HOH B 20 852 852 HOH HOH . J 5 HOH B 21 853 853 HOH HOH . J 5 HOH B 22 854 854 HOH HOH . J 5 HOH B 23 855 855 HOH HOH . J 5 HOH B 24 856 856 HOH HOH . J 5 HOH B 25 857 857 HOH HOH . J 5 HOH B 26 858 858 HOH HOH . J 5 HOH B 27 859 859 HOH HOH . J 5 HOH B 28 860 860 HOH HOH . J 5 HOH B 29 861 861 HOH HOH . J 5 HOH B 30 862 862 HOH HOH . J 5 HOH B 31 863 863 HOH HOH . J 5 HOH B 32 864 864 HOH HOH . J 5 HOH B 33 865 865 HOH HOH . J 5 HOH B 34 866 866 HOH HOH . J 5 HOH B 35 867 867 HOH HOH . J 5 HOH B 36 868 868 HOH HOH . J 5 HOH B 37 869 869 HOH HOH . J 5 HOH B 38 870 870 HOH HOH . J 5 HOH B 39 871 871 HOH HOH . J 5 HOH B 40 872 872 HOH HOH . J 5 HOH B 41 873 873 HOH HOH . J 5 HOH B 42 874 874 HOH HOH . J 5 HOH B 43 875 875 HOH HOH . J 5 HOH B 44 876 876 HOH HOH . J 5 HOH B 45 877 877 HOH HOH . J 5 HOH B 46 878 878 HOH HOH . J 5 HOH B 47 879 879 HOH HOH . J 5 HOH B 48 880 880 HOH HOH . J 5 HOH B 49 881 881 HOH HOH . J 5 HOH B 50 882 882 HOH HOH . J 5 HOH B 51 883 883 HOH HOH . J 5 HOH B 52 884 884 HOH HOH . J 5 HOH B 53 885 885 HOH HOH . J 5 HOH B 54 886 886 HOH HOH . J 5 HOH B 55 890 890 HOH HOH . J 5 HOH B 56 914 914 HOH HOH . J 5 HOH B 57 915 915 HOH HOH . J 5 HOH B 58 916 916 HOH HOH . J 5 HOH B 59 917 917 HOH HOH . J 5 HOH B 60 918 918 HOH HOH . J 5 HOH B 61 919 919 HOH HOH . J 5 HOH B 62 920 920 HOH HOH . J 5 HOH B 63 921 921 HOH HOH . J 5 HOH B 64 922 922 HOH HOH . J 5 HOH B 65 925 925 HOH HOH . J 5 HOH B 66 926 926 HOH HOH . J 5 HOH B 67 927 927 HOH HOH . J 5 HOH B 68 928 928 HOH HOH . J 5 HOH B 69 929 929 HOH HOH . J 5 HOH B 70 930 930 HOH HOH . J 5 HOH B 71 931 931 HOH HOH . J 5 HOH B 72 932 932 HOH HOH . J 5 HOH B 73 940 940 HOH HOH . J 5 HOH B 74 941 941 HOH HOH . J 5 HOH B 75 942 942 HOH HOH . J 5 HOH B 76 944 944 HOH HOH . J 5 HOH B 77 945 945 HOH HOH . J 5 HOH B 78 947 947 HOH HOH . J 5 HOH B 79 948 948 HOH HOH . J 5 HOH B 80 950 950 HOH HOH . J 5 HOH B 81 951 951 HOH HOH . J 5 HOH B 82 952 952 HOH HOH . J 5 HOH B 83 953 953 HOH HOH . J 5 HOH B 84 954 954 HOH HOH . J 5 HOH B 85 955 955 HOH HOH . J 5 HOH B 86 956 956 HOH HOH . J 5 HOH B 87 957 957 HOH HOH . J 5 HOH B 88 958 958 HOH HOH . J 5 HOH B 89 959 959 HOH HOH . J 5 HOH B 90 960 960 HOH HOH . J 5 HOH B 91 961 961 HOH HOH . J 5 HOH B 92 962 962 HOH HOH . J 5 HOH B 93 963 963 HOH HOH . J 5 HOH B 94 964 964 HOH HOH . J 5 HOH B 95 965 965 HOH HOH . J 5 HOH B 96 966 966 HOH HOH . J 5 HOH B 97 967 967 HOH HOH . J 5 HOH B 98 968 968 HOH HOH . J 5 HOH B 99 969 969 HOH HOH . J 5 HOH B 100 970 970 HOH HOH . J 5 HOH B 101 971 971 HOH HOH . J 5 HOH B 102 1014 1014 HOH HOH . J 5 HOH B 103 1015 1015 HOH HOH . J 5 HOH B 104 1016 1016 HOH HOH . J 5 HOH B 105 1024 1024 HOH HOH . J 5 HOH B 106 1025 1025 HOH HOH . J 5 HOH B 107 1026 1026 HOH HOH . J 5 HOH B 108 1027 1027 HOH HOH . J 5 HOH B 109 1028 1028 HOH HOH . J 5 HOH B 110 1029 1029 HOH HOH . J 5 HOH B 111 1030 1030 HOH HOH . J 5 HOH B 112 1031 1031 HOH HOH . J 5 HOH B 113 1032 1032 HOH HOH . J 5 HOH B 114 1037 1037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB MRY . . . E 4 56.922 16.776 21.608 1 40.38 ? OAB MRY 1205 A 1 HETATM 2 C CAA MRY . . . E 4 55.756 16.459 22.374 1 40.14 ? CAA MRY 1205 A 1 HETATM 3 C CAC MRY . . . E 4 55.226 17.732 23.036 1 40.4 ? CAC MRY 1205 A 1 HETATM 4 O OAD MRY . . . E 4 54.931 18.696 22.021 1 40.26 ? OAD MRY 1205 A 1 HETATM 5 C CAE MRY . . . E 4 53.966 17.472 23.866 1 38.96 ? CAE MRY 1205 A 1 HETATM 6 O OAF MRY . . . E 4 52.947 16.925 23.026 1 39.78 ? OAF MRY 1205 A 1 HETATM 7 C CAG MRY . . . E 4 54.233 16.517 25.033 1 37.89 ? CAG MRY 1205 A 1 HETATM 8 O OAH MRY . . . E 4 53.03 16.325 25.781 1 31.59 ? OAH MRY 1205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 8 #