data_1XR3
#
_model_server_result.job_id            5IuD1Ki3MFHeGaHLluOsig 
_model_server_result.datetime_utc      '2024-10-13 01:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xr3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":262}' 
#
_entry.id    1XR3 
#
_exptl.entry_id    1XR3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XR3 
_cell.length_a            104.224 
_cell.length_b            104.224 
_cell.length_c            124.227 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XR3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -41.409 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 250 n n 
PA O2A NAP sing 251 n n 
PA O5B NAP sing 252 n n 
PA O3 NAP sing 253 n n 
O2A HOA2 NAP sing 254 n n 
O5B C5B NAP sing 255 n n 
C5B C4B NAP sing 256 n n 
C5B H51A NAP sing 257 n n 
C5B H52A NAP sing 258 n n 
C4B O4B NAP sing 259 n n 
C4B C3B NAP sing 260 n n 
C4B H4B NAP sing 261 n n 
O4B C1B NAP sing 262 n n 
C3B O3B NAP sing 263 n n 
C3B C2B NAP sing 264 n n 
C3B H3B NAP sing 265 n n 
O3B HO3A NAP sing 266 n n 
C2B O2B NAP sing 267 n n 
C2B C1B NAP sing 268 n n 
C2B H2B NAP sing 269 n n 
O2B P2B NAP sing 270 n n 
C1B N9A NAP sing 271 n n 
C1B H1B NAP sing 272 n n 
N9A C8A NAP sing 273 n y 
N9A C4A NAP sing 274 n y 
C8A N7A NAP doub 275 n y 
C8A H8A NAP sing 276 n n 
N7A C5A NAP sing 277 n y 
C5A C6A NAP sing 278 n y 
C5A C4A NAP doub 279 n y 
C6A N6A NAP sing 280 n n 
C6A N1A NAP doub 281 n y 
N6A H61A NAP sing 282 n n 
N6A H62A NAP sing 283 n n 
N1A C2A NAP sing 284 n y 
C2A N3A NAP doub 285 n y 
C2A H2A NAP sing 286 n n 
N3A C4A NAP sing 287 n y 
O3 PN NAP sing 288 n n 
PN O1N NAP doub 289 n n 
PN O2N NAP sing 290 n n 
PN O5D NAP sing 291 n n 
O5D C5D NAP sing 292 n n 
C5D C4D NAP sing 293 n n 
C5D H51N NAP sing 294 n n 
C5D H52N NAP sing 295 n n 
C4D O4D NAP sing 296 n n 
C4D C3D NAP sing 297 n n 
C4D H4D NAP sing 298 n n 
O4D C1D NAP sing 299 n n 
C3D O3D NAP sing 300 n n 
C3D C2D NAP sing 301 n n 
C3D H3D NAP sing 302 n n 
O3D HO3N NAP sing 303 n n 
C2D O2D NAP sing 304 n n 
C2D C1D NAP sing 305 n n 
C2D H2D NAP sing 306 n n 
O2D HO2N NAP sing 307 n n 
C1D N1N NAP sing 308 n n 
C1D H1D NAP sing 309 n n 
N1N C2N NAP sing 310 n y 
N1N C6N NAP doub 311 n y 
C2N C3N NAP doub 312 n y 
C2N H2N NAP sing 313 n n 
C3N C7N NAP sing 314 n n 
C3N C4N NAP sing 315 n y 
C7N O7N NAP doub 316 n n 
C7N N7N NAP sing 317 n n 
N7N H71N NAP sing 318 n n 
N7N H72N NAP sing 319 n n 
C4N C5N NAP doub 320 n y 
C4N H4N NAP sing 321 n n 
C5N C6N NAP sing 322 n y 
C5N H5N NAP sing 323 n n 
C6N H6N NAP sing 324 n n 
P2B O1X NAP doub 325 n n 
P2B O2X NAP sing 326 n n 
P2B O3X NAP sing 327 n n 
O2X HOP2 NAP sing 328 n n 
O3X HOP3 NAP sing 329 n n 
#
_atom_sites.entry_id                     1XR3 
_atom_sites.fract_transf_matrix[1][1]    0.009595 
_atom_sites.fract_transf_matrix[1][2]    0.00554 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 262 301 NAP NAP . 
D 3 ISZ A 1 263 302 ISZ DRG . 
E 2 NAP B 1 301 301 NAP NAP . 
F 3 ISZ B 1 302 302 ISZ DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 21.749 -44.676 3.76 1 32.77 ? PA NAP 262 A 1 
HETATM 2 O O1A NAP . . . C 2 21.101 -46.004 3.841 1 36.14 ? O1A NAP 262 A 1 
HETATM 3 O O2A NAP . . . C 2 23.212 -44.603 3.969 1 33.55 ? O2A NAP 262 A 1 
HETATM 4 O O5B NAP . . . C 2 21.033 -43.698 4.817 1 31.84 ? O5B NAP 262 A 1 
HETATM 5 C C5B NAP . . . C 2 19.631 -43.434 4.723 1 29.11 ? C5B NAP 262 A 1 
HETATM 6 C C4B NAP . . . C 2 19.187 -42.55 5.89 1 31.33 ? C4B NAP 262 A 1 
HETATM 7 O O4B NAP . . . C 2 17.793 -42.232 5.729 1 30.76 ? O4B NAP 262 A 1 
HETATM 8 C C3B NAP . . . C 2 19.314 -43.314 7.209 1 31.35 ? C3B NAP 262 A 1 
HETATM 9 O O3B NAP . . . C 2 19.648 -42.41 8.266 1 35.35 ? O3B NAP 262 A 1 
HETATM 10 C C2B NAP . . . C 2 17.898 -43.853 7.409 1 31.22 ? C2B NAP 262 A 1 
HETATM 11 O O2B NAP . . . C 2 17.703 -44.019 8.816 1 30.67 ? O2B NAP 262 A 1 
HETATM 12 C C1B NAP . . . C 2 17.112 -42.632 6.928 1 30.58 ? C1B NAP 262 A 1 
HETATM 13 N N9A NAP . . . C 2 15.696 -42.916 6.594 1 31.69 ? N9A NAP 262 A 1 
HETATM 14 C C8A NAP . . . C 2 15.253 -43.869 5.775 1 30.26 ? C8A NAP 262 A 1 
HETATM 15 N N7A NAP . . . C 2 13.932 -43.773 5.645 1 29.7 ? N7A NAP 262 A 1 
HETATM 16 C C5A NAP . . . C 2 13.524 -42.754 6.393 1 30.73 ? C5A NAP 262 A 1 
HETATM 17 C C6A NAP . . . C 2 12.293 -42.156 6.638 1 32.34 ? C6A NAP 262 A 1 
HETATM 18 N N6A NAP . . . C 2 11.184 -42.637 6.083 1 32.84 ? N6A NAP 262 A 1 
HETATM 19 N N1A NAP . . . C 2 12.238 -41.086 7.446 1 31.6 ? N1A NAP 262 A 1 
HETATM 20 C C2A NAP . . . C 2 13.328 -40.596 8.014 1 30.7 ? C2A NAP 262 A 1 
HETATM 21 N N3A NAP . . . C 2 14.514 -41.139 7.801 1 28.34 ? N3A NAP 262 A 1 
HETATM 22 C C4A NAP . . . C 2 14.646 -42.208 7.002 1 30.89 ? C4A NAP 262 A 1 
HETATM 23 O O3 NAP . . . C 2 21.368 -44.035 2.328 1 32.39 ? O3 NAP 262 A 1 
HETATM 24 P PN NAP . . . C 2 22.276 -42.91 1.613 1 30.29 ? PN NAP 262 A 1 
HETATM 25 O O1N NAP . . . C 2 23.245 -43.578 0.717 1 31.47 ? O1N NAP 262 A 1 
HETATM 26 O O2N NAP . . . C 2 22.799 -41.994 2.652 1 33.73 ? O2N NAP 262 A 1 
HETATM 27 O O5D NAP . . . C 2 21.251 -42.091 0.675 1 28.5 ? O5D NAP 262 A 1 
HETATM 28 C C5D NAP . . . C 2 20.793 -40.786 1.044 1 25.81 ? C5D NAP 262 A 1 
HETATM 29 C C4D NAP . . . C 2 20.056 -40.072 -0.094 1 25.3 ? C4D NAP 262 A 1 
HETATM 30 O O4D NAP . . . C 2 20.948 -40.035 -1.224 1 27.01 ? O4D NAP 262 A 1 
HETATM 31 C C3D NAP . . . C 2 18.801 -40.811 -0.569 1 25.92 ? C3D NAP 262 A 1 
HETATM 32 O O3D NAP . . . C 2 17.844 -39.903 -1.123 1 23.44 ? O3D NAP 262 A 1 
HETATM 33 C C2D NAP . . . C 2 19.362 -41.69 -1.683 1 26.57 ? C2D NAP 262 A 1 
HETATM 34 O O2D NAP . . . C 2 18.346 -42.079 -2.612 1 26.63 ? O2D NAP 262 A 1 
HETATM 35 C C1D NAP . . . C 2 20.279 -40.657 -2.337 1 26 ? C1D NAP 262 A 1 
HETATM 36 N N1N NAP . . . C 2 21.203 -41.26 -3.324 1 23.18 ? N1N NAP 262 A 1 
HETATM 37 C C2N NAP . . . C 2 22.207 -42.139 -2.896 1 22.91 ? C2N NAP 262 A 1 
HETATM 38 C C3N NAP . . . C 2 23.034 -42.748 -3.834 1 23.47 ? C3N NAP 262 A 1 
HETATM 39 C C7N NAP . . . C 2 24.117 -43.729 -3.379 1 23.99 ? C7N NAP 262 A 1 
HETATM 40 O O7N NAP . . . C 2 24.906 -44.208 -4.193 1 26.35 ? O7N NAP 262 A 1 
HETATM 41 N N7N NAP . . . C 2 24.133 -44.004 -2.077 1 21.3 ? N7N NAP 262 A 1 
HETATM 42 C C4N NAP . . . C 2 22.863 -42.476 -5.188 1 23.14 ? C4N NAP 262 A 1 
HETATM 43 C C5N NAP . . . C 2 21.873 -41.6 -5.621 1 23.84 ? C5N NAP 262 A 1 
HETATM 44 C C6N NAP . . . C 2 21.04 -40.988 -4.69 1 25 ? C6N NAP 262 A 1 
HETATM 45 P P2B NAP . . . C 2 16.617 -45.054 9.396 1 29.69 ? P2B NAP 262 A 1 
HETATM 46 O O1X NAP . . . C 2 16.665 -46.332 8.419 1 33.99 ? O1X NAP 262 A 1 
HETATM 47 O O2X NAP . . . C 2 15.175 -44.376 9.181 1 32.62 ? O2X NAP 262 A 1 
HETATM 48 O O3X NAP . . . C 2 16.88 -45.406 10.809 1 30.58 ? O3X NAP 262 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#