data_1XR3
#
_model_server_result.job_id            PyRlwD2kUgNVBzUc5MXWkA 
_model_server_result.datetime_utc      '2024-10-13 01:23:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xr3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    1XR3 
#
_exptl.entry_id    1XR3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XR3 
_cell.length_a            104.224 
_cell.length_b            104.224 
_cell.length_c            124.227 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XR3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -41.409 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 250 n n 
PA O2A NAP sing 251 n n 
PA O5B NAP sing 252 n n 
PA O3 NAP sing 253 n n 
O2A HOA2 NAP sing 254 n n 
O5B C5B NAP sing 255 n n 
C5B C4B NAP sing 256 n n 
C5B H51A NAP sing 257 n n 
C5B H52A NAP sing 258 n n 
C4B O4B NAP sing 259 n n 
C4B C3B NAP sing 260 n n 
C4B H4B NAP sing 261 n n 
O4B C1B NAP sing 262 n n 
C3B O3B NAP sing 263 n n 
C3B C2B NAP sing 264 n n 
C3B H3B NAP sing 265 n n 
O3B HO3A NAP sing 266 n n 
C2B O2B NAP sing 267 n n 
C2B C1B NAP sing 268 n n 
C2B H2B NAP sing 269 n n 
O2B P2B NAP sing 270 n n 
C1B N9A NAP sing 271 n n 
C1B H1B NAP sing 272 n n 
N9A C8A NAP sing 273 n y 
N9A C4A NAP sing 274 n y 
C8A N7A NAP doub 275 n y 
C8A H8A NAP sing 276 n n 
N7A C5A NAP sing 277 n y 
C5A C6A NAP sing 278 n y 
C5A C4A NAP doub 279 n y 
C6A N6A NAP sing 280 n n 
C6A N1A NAP doub 281 n y 
N6A H61A NAP sing 282 n n 
N6A H62A NAP sing 283 n n 
N1A C2A NAP sing 284 n y 
C2A N3A NAP doub 285 n y 
C2A H2A NAP sing 286 n n 
N3A C4A NAP sing 287 n y 
O3 PN NAP sing 288 n n 
PN O1N NAP doub 289 n n 
PN O2N NAP sing 290 n n 
PN O5D NAP sing 291 n n 
O5D C5D NAP sing 292 n n 
C5D C4D NAP sing 293 n n 
C5D H51N NAP sing 294 n n 
C5D H52N NAP sing 295 n n 
C4D O4D NAP sing 296 n n 
C4D C3D NAP sing 297 n n 
C4D H4D NAP sing 298 n n 
O4D C1D NAP sing 299 n n 
C3D O3D NAP sing 300 n n 
C3D C2D NAP sing 301 n n 
C3D H3D NAP sing 302 n n 
O3D HO3N NAP sing 303 n n 
C2D O2D NAP sing 304 n n 
C2D C1D NAP sing 305 n n 
C2D H2D NAP sing 306 n n 
O2D HO2N NAP sing 307 n n 
C1D N1N NAP sing 308 n n 
C1D H1D NAP sing 309 n n 
N1N C2N NAP sing 310 n y 
N1N C6N NAP doub 311 n y 
C2N C3N NAP doub 312 n y 
C2N H2N NAP sing 313 n n 
C3N C7N NAP sing 314 n n 
C3N C4N NAP sing 315 n y 
C7N O7N NAP doub 316 n n 
C7N N7N NAP sing 317 n n 
N7N H71N NAP sing 318 n n 
N7N H72N NAP sing 319 n n 
C4N C5N NAP doub 320 n y 
C4N H4N NAP sing 321 n n 
C5N C6N NAP sing 322 n y 
C5N H5N NAP sing 323 n n 
C6N H6N NAP sing 324 n n 
P2B O1X NAP doub 325 n n 
P2B O2X NAP sing 326 n n 
P2B O3X NAP sing 327 n n 
O2X HOP2 NAP sing 328 n n 
O3X HOP3 NAP sing 329 n n 
#
_atom_sites.entry_id                     1XR3 
_atom_sites.fract_transf_matrix[1][1]    0.009595 
_atom_sites.fract_transf_matrix[1][2]    0.00554 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 262 301 NAP NAP . 
D 3 ISZ A 1 263 302 ISZ DRG . 
E 2 NAP B 1 301 301 NAP NAP . 
F 3 ISZ B 1 302 302 ISZ DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -9.379 -33.1 -20.839 1 54.7 ? PA NAP 301 B 1 
HETATM 2 O O1A NAP . . . E 2 -10.131 -32.54 -19.695 1 54.42 ? O1A NAP 301 B 1 
HETATM 3 O O2A NAP . . . E 2 -9.711 -32.605 -22.194 1 54.64 ? O2A NAP 301 B 1 
HETATM 4 O O5B NAP . . . E 2 -9.519 -34.704 -20.805 1 51.96 ? O5B NAP 301 B 1 
HETATM 5 C C5B NAP . . . E 2 -9.038 -35.432 -19.672 1 47.48 ? C5B NAP 301 B 1 
HETATM 6 C C4B NAP . . . E 2 -9.509 -36.887 -19.71 1 45.59 ? C4B NAP 301 B 1 
HETATM 7 O O4B NAP . . . E 2 -8.97 -37.562 -18.558 1 43.82 ? O4B NAP 301 B 1 
HETATM 8 C C3B NAP . . . E 2 -11.034 -36.948 -19.586 1 44.19 ? C3B NAP 301 B 1 
HETATM 9 O O3B NAP . . . E 2 -11.568 -37.925 -20.483 1 41.79 ? O3B NAP 301 B 1 
HETATM 10 C C2B NAP . . . E 2 -11.228 -37.386 -18.134 1 44.55 ? C2B NAP 301 B 1 
HETATM 11 O O2B NAP . . . E 2 -12.45 -38.122 -18.041 1 47.75 ? O2B NAP 301 B 1 
HETATM 12 C C1B NAP . . . E 2 -10.036 -38.332 -17.983 1 41.82 ? C1B NAP 301 B 1 
HETATM 13 N N9A NAP . . . E 2 -9.733 -38.634 -16.564 1 39.02 ? N9A NAP 301 B 1 
HETATM 14 C C8A NAP . . . E 2 -9.517 -37.738 -15.603 1 38.86 ? C8A NAP 301 B 1 
HETATM 15 N N7A NAP . . . E 2 -9.29 -38.353 -14.445 1 36.86 ? N7A NAP 301 B 1 
HETATM 16 C C5A NAP . . . E 2 -9.363 -39.661 -14.666 1 36.91 ? C5A NAP 301 B 1 
HETATM 17 C C6A NAP . . . E 2 -9.251 -40.788 -13.859 1 36.61 ? C6A NAP 301 B 1 
HETATM 18 N N6A NAP . . . E 2 -9.028 -40.662 -12.554 1 36.58 ? N6A NAP 301 B 1 
HETATM 19 N N1A NAP . . . E 2 -9.405 -42.002 -14.411 1 34.68 ? N1A NAP 301 B 1 
HETATM 20 C C2A NAP . . . E 2 -9.662 -42.139 -15.701 1 35.38 ? C2A NAP 301 B 1 
HETATM 21 N N3A NAP . . . E 2 -9.777 -41.088 -16.494 1 36.17 ? N3A NAP 301 B 1 
HETATM 22 C C4A NAP . . . E 2 -9.638 -39.843 -16.015 1 37.91 ? C4A NAP 301 B 1 
HETATM 23 O O3 NAP . . . E 2 -7.812 -32.858 -20.542 1 56.51 ? O3 NAP 301 B 1 
HETATM 24 P PN NAP . . . E 2 -6.651 -32.926 -21.661 1 56.02 ? PN NAP 301 B 1 
HETATM 25 O O1N NAP . . . E 2 -6.193 -31.552 -21.962 1 55.36 ? O1N NAP 301 B 1 
HETATM 26 O O2N NAP . . . E 2 -7.068 -33.792 -22.788 1 56.22 ? O2N NAP 301 B 1 
HETATM 27 O O5D NAP . . . E 2 -5.444 -33.65 -20.876 1 56.33 ? O5D NAP 301 B 1 
HETATM 28 C C5D NAP . . . E 2 -5.096 -35.008 -21.161 1 53.39 ? C5D NAP 301 B 1 
HETATM 29 C C4D NAP . . . E 2 -3.629 -35.287 -20.83 1 52.02 ? C4D NAP 301 B 1 
HETATM 30 O O4D NAP . . . E 2 -2.857 -34.238 -21.446 1 51.41 ? O4D NAP 301 B 1 
HETATM 31 C C3D NAP . . . E 2 -3.328 -35.228 -19.33 1 52.73 ? C3D NAP 301 B 1 
HETATM 32 O O3D NAP . . . E 2 -2.285 -36.143 -18.98 1 54.49 ? O3D NAP 301 B 1 
HETATM 33 C C2D NAP . . . E 2 -2.836 -33.793 -19.157 1 52.21 ? C2D NAP 301 B 1 
HETATM 34 O O2D NAP . . . E 2 -1.976 -33.678 -18.019 1 51.43 ? O2D NAP 301 B 1 
HETATM 35 C C1D NAP . . . E 2 -2.005 -33.675 -20.434 1 50.96 ? C1D NAP 301 B 1 
HETATM 36 N N1N NAP . . . E 2 -1.576 -32.291 -20.739 1 49.11 ? N1N NAP 301 B 1 
HETATM 37 C C2N NAP . . . E 2 -2.518 -31.328 -21.128 1 48.81 ? C2N NAP 301 B 1 
HETATM 38 C C3N NAP . . . E 2 -2.107 -30.026 -21.398 1 48.25 ? C3N NAP 301 B 1 
HETATM 39 C C7N NAP . . . E 2 -3.129 -28.968 -21.824 1 47.89 ? C7N NAP 301 B 1 
HETATM 40 O O7N NAP . . . E 2 -2.813 -27.786 -21.947 1 48.1 ? O7N NAP 301 B 1 
HETATM 41 N N7N NAP . . . E 2 -4.358 -29.426 -22.039 1 47.97 ? N7N NAP 301 B 1 
HETATM 42 C C4N NAP . . . E 2 -0.761 -29.696 -21.276 1 48.89 ? C4N NAP 301 B 1 
HETATM 43 C C5N NAP . . . E 2 0.183 -30.643 -20.892 1 49.01 ? C5N NAP 301 B 1 
HETATM 44 C C6N NAP . . . E 2 -0.222 -31.946 -20.623 1 49.47 ? C6N NAP 301 B 1 
HETATM 45 P P2B NAP . . . E 2 -13.358 -38.067 -16.711 1 49.3 ? P2B NAP 301 B 1 
HETATM 46 O O1X NAP . . . E 2 -12.869 -39.295 -15.789 1 47.95 ? O1X NAP 301 B 1 
HETATM 47 O O2X NAP . . . E 2 -14.856 -38.407 -17.193 1 46.44 ? O2X NAP 301 B 1 
HETATM 48 O O3X NAP . . . E 2 -13.264 -36.766 -16.012 1 47.87 ? O3X NAP 301 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#