data_1XRB # _model_server_result.job_id xSl7W0X-2ItXjbxF72c-ww _model_server_result.datetime_utc '2024-11-28 04:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":384}' # _entry.id 1XRB # _exptl.entry_id 1XRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XRB _cell.length_a 128.9 _cell.length_b 128.9 _cell.length_c 139.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 48 A GLY 48 1_555 A N MSE 49 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 49 A MSE 49 1_555 A N VAL 50 A VAL 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 A C ASP 81 A ASP 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 82 A MSE 82 1_555 A N GLY 83 A GLY 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 A C LEU 121 A LEU 121 1_555 A N MSE 122 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale6 A C MSE 122 A MSE 122 1_555 A N PHE 123 A PHE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 A C LEU 133 A LEU 133 1_555 A N MSE 134 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 A C MSE 134 A MSE 134 1_555 A N PRO 135 A PRO 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C VAL 202 A VAL 202 1_555 A N MSE 203 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 A C MSE 203 A MSE 203 1_555 A N GLU 204 A GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C PRO 235 A PRO 235 1_555 A N MSE 236 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 236 A MSE 236 1_555 A N GLY 237 A GLY 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C GLY 253 A GLY 253 1_555 A N MSE 254 A MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale14 A C MSE 254 A MSE 254 1_555 A N ALA 255 A ALA 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale15 A C ILE 310 A ILE 310 1_555 A N MSE 311 A MSE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 A C MSE 311 A MSE 311 1_555 A N VAL 312 A VAL 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale17 A C GLN 342 A GLN 342 1_555 A N MSE 343 A MSE 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C MSE 343 A MSE 343 1_555 A N LEU 344 A LEU 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OE1 GLU 42 A GLU 42 1_555 F K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc2 A OE2 GLU 42 A GLU 42 1_555 F K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc3 A O GLY 243 A GLY 243 1_555 G K K . A K 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc4 A OD1 ASP 271 A ASP 271 1_555 D MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A OD2 ASP 271 A ASP 271 1_555 D MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 B O1 PO4 . A PO4 384 1_555 D MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 B O3 PO4 . A PO4 384 1_555 E MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc8 B O4 PO4 . A PO4 384 1_555 E MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 C O2 PO4 . A PO4 385 1_555 E MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 C O3 PO4 . A PO4 385 1_555 E MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 258 n n P O2 PO4 sing 259 n n P O3 PO4 sing 260 n n P O4 PO4 sing 261 n n # _atom_sites.entry_id 1XRB _atom_sites.fract_transf_matrix[1][1] 0.007758 _atom_sites.fract_transf_matrix[1][2] 0.004479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 384 384 PO4 PO4 . C 2 PO4 A 1 385 385 PO4 PO4 . D 3 MG A 1 411 411 MG MG . E 3 MG A 1 412 412 MG MG . F 4 K A 1 413 413 K K . G 4 K A 1 414 414 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 -13.515 42.598 18.142 1 57.63 ? P PO4 384 A 1 HETATM 2 O O1 PO4 . . . B 2 -13.304 41.137 17.869 1 61.51 ? O1 PO4 384 A 1 HETATM 3 O O2 PO4 . . . B 2 -12.227 43.277 18.335 1 55.99 ? O2 PO4 384 A 1 HETATM 4 O O3 PO4 . . . B 2 -14.353 42.86 19.305 1 57.62 ? O3 PO4 384 A 1 HETATM 5 O O4 PO4 . . . B 2 -14.34 43.172 17.08 1 62.07 ? O4 PO4 384 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #