data_1XRM # _model_server_result.job_id WqMV25CeiMtd8pAnm5_e-A _model_server_result.datetime_utc '2025-04-06 03:15:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xrm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1XRM # _exptl.entry_id 1XRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XRM _cell.length_a 56.97 _cell.length_b 61.92 _cell.length_c 80.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C C ALA . A ALA 301 1_555 D N PHE . A PHE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 237 n n N H PHE sing 238 n n N H2 PHE sing 239 n n CA C PHE sing 240 n n CA CB PHE sing 241 n n CA HA PHE sing 242 n n C O PHE doub 243 n n C OXT PHE sing 244 n n CB CG PHE sing 245 n n CB HB2 PHE sing 246 n n CB HB3 PHE sing 247 n n CG CD1 PHE doub 248 n y CG CD2 PHE sing 249 n y CD1 CE1 PHE sing 250 n y CD1 HD1 PHE sing 251 n n CD2 CE2 PHE doub 252 n y CD2 HD2 PHE sing 253 n n CE1 CZ PHE doub 254 n y CE1 HE1 PHE sing 255 n n CE2 CZ PHE sing 256 n y CE2 HE2 PHE sing 257 n n CZ HZ PHE sing 258 n n OXT HXT PHE sing 259 n n # _atom_sites.entry_id 1XRM _atom_sites.fract_transf_matrix[1][1] 0.017553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PHE A 1 300 300 PHE PHE . C 3 ALA A 1 301 301 ALA ALA . D 2 PHE A 1 302 302 PHE PHE . E 4 HOH A 1 303 1 HOH WAT . E 4 HOH A 2 304 2 HOH WAT . E 4 HOH A 3 305 3 HOH WAT . E 4 HOH A 4 306 4 HOH WAT . E 4 HOH A 5 307 5 HOH WAT . E 4 HOH A 6 308 6 HOH WAT . E 4 HOH A 7 309 7 HOH WAT . E 4 HOH A 8 310 8 HOH WAT . E 4 HOH A 9 311 9 HOH WAT . E 4 HOH A 10 312 10 HOH WAT . E 4 HOH A 11 313 11 HOH WAT . E 4 HOH A 12 314 12 HOH WAT . E 4 HOH A 13 315 13 HOH WAT . E 4 HOH A 14 316 14 HOH WAT . E 4 HOH A 15 317 15 HOH WAT . E 4 HOH A 16 318 16 HOH WAT . E 4 HOH A 17 319 17 HOH WAT . E 4 HOH A 18 320 18 HOH WAT . E 4 HOH A 19 321 19 HOH WAT . E 4 HOH A 20 322 20 HOH WAT . E 4 HOH A 21 323 21 HOH WAT . E 4 HOH A 22 324 22 HOH WAT . E 4 HOH A 23 325 23 HOH WAT . E 4 HOH A 24 326 24 HOH WAT . E 4 HOH A 25 327 25 HOH WAT . E 4 HOH A 26 328 26 HOH WAT . E 4 HOH A 27 329 27 HOH WAT . E 4 HOH A 28 330 28 HOH WAT . E 4 HOH A 29 331 29 HOH WAT . E 4 HOH A 30 332 30 HOH WAT . E 4 HOH A 31 333 31 HOH WAT . E 4 HOH A 32 334 32 HOH WAT . E 4 HOH A 33 335 33 HOH WAT . E 4 HOH A 34 336 34 HOH WAT . E 4 HOH A 35 337 35 HOH WAT . E 4 HOH A 36 338 36 HOH WAT . E 4 HOH A 37 339 37 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . D 2 6.808 16.675 19.885 1 65.16 ? N PHE 302 A 1 HETATM 2 C CA PHE . . . D 2 6.257 18.02 19.802 1 64.77 ? CA PHE 302 A 1 HETATM 3 C C PHE . . . D 2 6.974 18.97 20.77 1 66.09 ? C PHE 302 A 1 HETATM 4 O O PHE . . . D 2 6.309 19.634 21.596 1 65.14 ? O PHE 302 A 1 HETATM 5 C CB PHE . . . D 2 4.754 17.988 20.095 1 63.95 ? CB PHE 302 A 1 HETATM 6 C CG PHE . . . D 2 4.015 19.193 19.583 1 63.57 ? CG PHE 302 A 1 HETATM 7 C CD1 PHE . . . D 2 3.995 19.474 18.219 1 61.93 ? CD1 PHE 302 A 1 HETATM 8 C CD2 PHE . . . D 2 3.352 20.049 20.457 1 60.71 ? CD2 PHE 302 A 1 HETATM 9 C CE1 PHE . . . D 2 3.321 20.583 17.731 1 60.36 ? CE1 PHE 302 A 1 HETATM 10 C CE2 PHE . . . D 2 2.673 21.166 19.976 1 60.24 ? CE2 PHE 302 A 1 HETATM 11 C CZ PHE . . . D 2 2.658 21.435 18.606 1 60.41 ? CZ PHE 302 A 1 HETATM 12 O OXT PHE . . . D 2 8.22 19.048 20.677 1 68.59 ? OXT PHE 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #