data_1XRY # _model_server_result.job_id SwJzM9TYl40-DXcl_KQqfA _model_server_result.datetime_utc '2024-10-18 14:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 1XRY # _exptl.entry_id 1XRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.373 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XRY _cell.length_a 107.39 _cell.length_b 107.39 _cell.length_c 103.06 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 223 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OD2 ASP 117 A ASP 117 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A OD1 ASP 117 A ASP 117 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc4 A OE1 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 A OE2 GLU 152 A GLU 152 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A OD1 ASP 179 A ASP 179 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 A OD2 ASP 179 A ASP 179 1_555 C ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 A NE2 HIS 256 A HIS 256 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc9 B ZN ZN . A ZN 1001 1_555 D O2 BES . A BES 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 B ZN ZN . A ZN 1001 1_555 D O3 BES . A BES 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc11 C ZN ZN . A ZN 1002 1_555 D N2 BES . A BES 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 C ZN ZN . A ZN 1002 1_555 D O2 BES . A BES 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'C16 H24 N2 O4' _chem_comp.formula_weight 308.373 _chem_comp.id BES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BESTATIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 BES sing 70 n n N2 HN21 BES sing 71 n n N2 HN22 BES sing 72 n n C1 C6 BES sing 73 n n C1 C2 BES sing 74 n n C1 H1 BES sing 75 n n C6 C7 BES sing 76 n n C6 H61 BES sing 77 n n C6 H62 BES sing 78 n n C7 C8 BES doub 79 n y C7 C12 BES sing 80 n y C8 C9 BES sing 81 n y C8 H8 BES sing 82 n n C12 C11 BES doub 83 n y C12 H12 BES sing 84 n n C9 C10 BES doub 85 n y C9 H9 BES sing 86 n n C11 C10 BES sing 87 n y C11 H11 BES sing 88 n n C10 H10 BES sing 89 n n C2 O2 BES sing 90 n n C2 C3 BES sing 91 n n C2 H2 BES sing 92 n n O2 HO2 BES sing 93 n n C3 O3 BES doub 94 n n C3 N1 BES sing 95 n n N1 C4 BES sing 96 n n N1 HN BES sing 97 n n C4 C13 BES sing 98 n n C4 C5 BES sing 99 n n C4 H4 BES sing 100 n n C13 C14 BES sing 101 n n C13 H131 BES sing 102 n n C13 H132 BES sing 103 n n C14 C15 BES sing 104 n n C14 C16 BES sing 105 n n C14 H14 BES sing 106 n n C15 H151 BES sing 107 n n C15 H152 BES sing 108 n n C15 H153 BES sing 109 n n C16 H161 BES sing 110 n n C16 H162 BES sing 111 n n C16 H163 BES sing 112 n n C5 O1 BES sing 113 n n C5 O4 BES doub 114 n n O1 HO1 BES sing 115 n n # _atom_sites.entry_id 1XRY _atom_sites.fract_transf_matrix[1][1] 0.009312 _atom_sites.fract_transf_matrix[1][2] 0.005376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010752 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1001 1 ZN ZN . C 2 ZN A 1 1002 2 ZN ZN . D 3 BES A 1 2001 1 BES BES . E 4 HOH A 1 2002 1 HOH HOH . E 4 HOH A 2 2003 2 HOH HOH . E 4 HOH A 3 2004 3 HOH HOH . E 4 HOH A 4 2005 4 HOH HOH . E 4 HOH A 5 2006 5 HOH HOH . E 4 HOH A 6 2007 6 HOH HOH . E 4 HOH A 7 2008 7 HOH HOH . E 4 HOH A 8 2009 8 HOH HOH . E 4 HOH A 9 2010 9 HOH HOH . E 4 HOH A 10 2011 10 HOH HOH . E 4 HOH A 11 2012 11 HOH HOH . E 4 HOH A 12 2013 12 HOH HOH . E 4 HOH A 13 2014 13 HOH HOH . E 4 HOH A 14 2015 14 HOH HOH . E 4 HOH A 15 2016 15 HOH HOH . E 4 HOH A 16 2017 16 HOH HOH . E 4 HOH A 17 2018 17 HOH HOH . E 4 HOH A 18 2019 18 HOH HOH . E 4 HOH A 19 2020 19 HOH HOH . E 4 HOH A 20 2021 20 HOH HOH . E 4 HOH A 21 2022 21 HOH HOH . E 4 HOH A 22 2023 22 HOH HOH . E 4 HOH A 23 2024 23 HOH HOH . E 4 HOH A 24 2025 24 HOH HOH . E 4 HOH A 25 2026 25 HOH HOH . E 4 HOH A 26 2027 26 HOH HOH . E 4 HOH A 27 2028 27 HOH HOH . E 4 HOH A 28 2029 28 HOH HOH . E 4 HOH A 29 2030 29 HOH HOH . E 4 HOH A 30 2031 30 HOH HOH . E 4 HOH A 31 2032 31 HOH HOH . E 4 HOH A 32 2033 32 HOH HOH . E 4 HOH A 33 2034 33 HOH HOH . E 4 HOH A 34 2035 34 HOH HOH . E 4 HOH A 35 2036 35 HOH HOH . E 4 HOH A 36 2037 36 HOH HOH . E 4 HOH A 37 2038 37 HOH HOH . E 4 HOH A 38 2039 38 HOH HOH . E 4 HOH A 39 2040 39 HOH HOH . E 4 HOH A 40 2041 40 HOH HOH . E 4 HOH A 41 2042 41 HOH HOH . E 4 HOH A 42 2043 42 HOH HOH . E 4 HOH A 43 2044 43 HOH HOH . E 4 HOH A 44 2045 44 HOH HOH . E 4 HOH A 45 2046 45 HOH HOH . E 4 HOH A 46 2047 46 HOH HOH . E 4 HOH A 47 2048 47 HOH HOH . E 4 HOH A 48 2049 48 HOH HOH . E 4 HOH A 49 2050 49 HOH HOH . E 4 HOH A 50 2051 50 HOH HOH . E 4 HOH A 51 2052 51 HOH HOH . E 4 HOH A 52 2053 52 HOH HOH . E 4 HOH A 53 2054 53 HOH HOH . E 4 HOH A 54 2055 54 HOH HOH . E 4 HOH A 55 2056 55 HOH HOH . E 4 HOH A 56 2057 56 HOH HOH . E 4 HOH A 57 2058 57 HOH HOH . E 4 HOH A 58 2059 58 HOH HOH . E 4 HOH A 59 2060 59 HOH HOH . E 4 HOH A 60 2061 60 HOH HOH . E 4 HOH A 61 2062 61 HOH HOH . E 4 HOH A 62 2063 62 HOH HOH . E 4 HOH A 63 2064 63 HOH HOH . E 4 HOH A 64 2065 64 HOH HOH . E 4 HOH A 65 2066 65 HOH HOH . E 4 HOH A 66 2067 66 HOH HOH . E 4 HOH A 67 2068 67 HOH HOH . E 4 HOH A 68 2069 68 HOH HOH . E 4 HOH A 69 2070 69 HOH HOH . E 4 HOH A 70 2071 70 HOH HOH . E 4 HOH A 71 2072 71 HOH HOH . E 4 HOH A 72 2073 72 HOH HOH . E 4 HOH A 73 2074 73 HOH HOH . E 4 HOH A 74 2075 74 HOH HOH . E 4 HOH A 75 2076 75 HOH HOH . E 4 HOH A 76 2077 76 HOH HOH . E 4 HOH A 77 2078 77 HOH HOH . E 4 HOH A 78 2079 78 HOH HOH . E 4 HOH A 79 2080 79 HOH HOH . E 4 HOH A 80 2081 80 HOH HOH . E 4 HOH A 81 2082 81 HOH HOH . E 4 HOH A 82 2083 82 HOH HOH . E 4 HOH A 83 2084 83 HOH HOH . E 4 HOH A 84 2085 84 HOH HOH . E 4 HOH A 85 2086 85 HOH HOH . E 4 HOH A 86 2087 86 HOH HOH . E 4 HOH A 87 2088 87 HOH HOH . E 4 HOH A 88 2089 88 HOH HOH . E 4 HOH A 89 2090 89 HOH HOH . E 4 HOH A 90 2091 90 HOH HOH . E 4 HOH A 91 2092 91 HOH HOH . E 4 HOH A 92 2093 92 HOH HOH . E 4 HOH A 93 2094 93 HOH HOH . E 4 HOH A 94 2095 94 HOH HOH . E 4 HOH A 95 2096 95 HOH HOH . E 4 HOH A 96 2097 96 HOH HOH . E 4 HOH A 97 2098 97 HOH HOH . E 4 HOH A 98 2099 98 HOH HOH . E 4 HOH A 99 2100 99 HOH HOH . E 4 HOH A 100 2101 100 HOH HOH . E 4 HOH A 101 2102 101 HOH HOH . E 4 HOH A 102 2103 102 HOH HOH . E 4 HOH A 103 2104 103 HOH HOH . E 4 HOH A 104 2105 104 HOH HOH . E 4 HOH A 105 2106 105 HOH HOH . E 4 HOH A 106 2107 106 HOH HOH . E 4 HOH A 107 2108 107 HOH HOH . E 4 HOH A 108 2109 108 HOH HOH . E 4 HOH A 109 2110 109 HOH HOH . E 4 HOH A 110 2111 110 HOH HOH . E 4 HOH A 111 2112 111 HOH HOH . E 4 HOH A 112 2113 112 HOH HOH . E 4 HOH A 113 2114 113 HOH HOH . E 4 HOH A 114 2115 114 HOH HOH . E 4 HOH A 115 2116 115 HOH HOH . E 4 HOH A 116 2117 116 HOH HOH . E 4 HOH A 117 2118 117 HOH HOH . E 4 HOH A 118 2119 118 HOH HOH . E 4 HOH A 119 2120 119 HOH HOH . E 4 HOH A 120 2121 120 HOH HOH . E 4 HOH A 121 2122 121 HOH HOH . E 4 HOH A 122 2123 122 HOH HOH . E 4 HOH A 123 2124 123 HOH HOH . E 4 HOH A 124 2125 124 HOH HOH . E 4 HOH A 125 2126 125 HOH HOH . E 4 HOH A 126 2127 126 HOH HOH . E 4 HOH A 127 2128 127 HOH HOH . E 4 HOH A 128 2129 128 HOH HOH . E 4 HOH A 129 2130 129 HOH HOH . E 4 HOH A 130 2131 130 HOH HOH . E 4 HOH A 131 2132 131 HOH HOH . E 4 HOH A 132 2133 132 HOH HOH . E 4 HOH A 133 2134 133 HOH HOH . E 4 HOH A 134 2135 134 HOH HOH . E 4 HOH A 135 2136 135 HOH HOH . E 4 HOH A 136 2137 136 HOH HOH . E 4 HOH A 137 2138 137 HOH HOH . E 4 HOH A 138 2139 138 HOH HOH . E 4 HOH A 139 2140 139 HOH HOH . E 4 HOH A 140 2141 140 HOH HOH . E 4 HOH A 141 2142 141 HOH HOH . E 4 HOH A 142 2143 142 HOH HOH . E 4 HOH A 143 2144 143 HOH HOH . E 4 HOH A 144 2145 144 HOH HOH . E 4 HOH A 145 2146 145 HOH HOH . E 4 HOH A 146 2147 146 HOH HOH . E 4 HOH A 147 2148 147 HOH HOH . E 4 HOH A 148 2149 148 HOH HOH . E 4 HOH A 149 2150 149 HOH HOH . E 4 HOH A 150 2151 150 HOH HOH . E 4 HOH A 151 2152 151 HOH HOH . E 4 HOH A 152 2153 152 HOH HOH . E 4 HOH A 153 2154 153 HOH HOH . E 4 HOH A 154 2155 154 HOH HOH . E 4 HOH A 155 2156 155 HOH HOH . E 4 HOH A 156 2157 156 HOH HOH . E 4 HOH A 157 2158 157 HOH HOH . E 4 HOH A 158 2159 158 HOH HOH . E 4 HOH A 159 2160 159 HOH HOH . E 4 HOH A 160 2161 160 HOH HOH . E 4 HOH A 161 2162 161 HOH HOH . E 4 HOH A 162 2163 162 HOH HOH . E 4 HOH A 163 2164 163 HOH HOH . E 4 HOH A 164 2165 164 HOH HOH . E 4 HOH A 165 2166 165 HOH HOH . E 4 HOH A 166 2167 166 HOH HOH . E 4 HOH A 167 2168 167 HOH HOH . E 4 HOH A 168 2169 168 HOH HOH . E 4 HOH A 169 2170 169 HOH HOH . E 4 HOH A 170 2171 170 HOH HOH . E 4 HOH A 171 2172 171 HOH HOH . E 4 HOH A 172 2173 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 BES . . . D 3 33.937 -3.708 40.284 1 8.04 ? N2 BES 2001 A 1 HETATM 2 C C1 BES . . . D 3 34.472 -3.853 41.678 1 14.58 ? C1 BES 2001 A 1 HETATM 3 C C6 BES . . . D 3 34.032 -2.609 42.531 1 15.69 ? C6 BES 2001 A 1 HETATM 4 C C7 BES . . . D 3 32.549 -2.677 42.9 1 17.11 ? C7 BES 2001 A 1 HETATM 5 C C8 BES . . . D 3 31.787 -1.497 43.003 1 20.29 ? C8 BES 2001 A 1 HETATM 6 C C12 BES . . . D 3 31.936 -3.927 43.143 1 21.04 ? C12 BES 2001 A 1 HETATM 7 C C9 BES . . . D 3 30.412 -1.584 43.324 1 21.15 ? C9 BES 2001 A 1 HETATM 8 C C11 BES . . . D 3 30.561 -4.023 43.463 1 21.52 ? C11 BES 2001 A 1 HETATM 9 C C10 BES . . . D 3 29.804 -2.837 43.539 1 20.87 ? C10 BES 2001 A 1 HETATM 10 C C2 BES . . . D 3 36.012 -3.971 41.703 1 11.96 ? C2 BES 2001 A 1 HETATM 11 O O2 BES . . . D 3 36.513 -4.709 40.578 1 12.18 ? O2 BES 2001 A 1 HETATM 12 C C3 BES . . . D 3 36.463 -4.524 43.026 1 12.86 ? C3 BES 2001 A 1 HETATM 13 O O3 BES . . . D 3 36.369 -5.716 43.251 1 13.04 ? O3 BES 2001 A 1 HETATM 14 N N1 BES . . . D 3 36.957 -3.643 43.917 1 14.78 ? N1 BES 2001 A 1 HETATM 15 C C4 BES . . . D 3 37.364 -4.112 45.24 1 14.69 ? C4 BES 2001 A 1 HETATM 16 C C13 BES . . . D 3 38.297 -3.091 45.869 1 17.68 ? C13 BES 2001 A 1 HETATM 17 C C14 BES . . . D 3 39.622 -3.01 45.099 1 18.33 ? C14 BES 2001 A 1 HETATM 18 C C15 BES . . . D 3 40.469 -1.968 45.827 1 19.22 ? C15 BES 2001 A 1 HETATM 19 C C16 BES . . . D 3 40.353 -4.378 45.157 1 23.34 ? C16 BES 2001 A 1 HETATM 20 C C5 BES . . . D 3 36.179 -4.258 46.151 1 14.63 ? C5 BES 2001 A 1 HETATM 21 O O1 BES . . . D 3 36.228 -5.01 47.102 1 20.34 ? O1 BES 2001 A 1 HETATM 22 O O4 BES . . . D 3 35.082 -3.55 45.87 1 16.83 ? O4 BES 2001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #