data_1XT8 # _model_server_result.job_id 5h8dW9tDWoDJEm9vR5LkMA _model_server_result.datetime_utc '2024-10-13 00:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 1XT8 # _exptl.entry_id 1XT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.81 _cell.angle_gamma 90 _cell.entry_id 1XT8 _cell.length_a 93.863 _cell.length_b 88.787 _cell.length_c 72.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1XT8 _atom_sites.fract_transf_matrix[1][1] 0.010654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003423 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYS A 1 401 401 CYS CYS . D 2 CYS A 1 402 402 CYS CYS . E 3 GOL B 1 403 403 GOL GOL . F 4 HOH A 1 403 1 HOH HOH . F 4 HOH A 2 404 2 HOH HOH . F 4 HOH A 3 405 3 HOH HOH . F 4 HOH A 4 406 4 HOH HOH . F 4 HOH A 5 407 7 HOH HOH . F 4 HOH A 6 408 9 HOH HOH . F 4 HOH A 7 409 10 HOH HOH . F 4 HOH A 8 410 14 HOH HOH . F 4 HOH A 9 411 15 HOH HOH . F 4 HOH A 10 412 16 HOH HOH . F 4 HOH A 11 413 19 HOH HOH . F 4 HOH A 12 414 22 HOH HOH . F 4 HOH A 13 415 23 HOH HOH . F 4 HOH A 14 416 30 HOH HOH . F 4 HOH A 15 417 31 HOH HOH . F 4 HOH A 16 418 37 HOH HOH . F 4 HOH A 17 419 38 HOH HOH . F 4 HOH A 18 420 40 HOH HOH . F 4 HOH A 19 421 41 HOH HOH . F 4 HOH A 20 422 42 HOH HOH . F 4 HOH A 21 423 43 HOH HOH . F 4 HOH A 22 424 45 HOH HOH . F 4 HOH A 23 425 47 HOH HOH . F 4 HOH A 24 426 48 HOH HOH . F 4 HOH A 25 427 53 HOH HOH . F 4 HOH A 26 428 55 HOH HOH . F 4 HOH A 27 429 58 HOH HOH . F 4 HOH A 28 430 60 HOH HOH . F 4 HOH A 29 431 61 HOH HOH . F 4 HOH A 30 432 62 HOH HOH . F 4 HOH A 31 433 64 HOH HOH . F 4 HOH A 32 434 66 HOH HOH . F 4 HOH A 33 435 68 HOH HOH . F 4 HOH A 34 436 69 HOH HOH . F 4 HOH A 35 437 70 HOH HOH . F 4 HOH A 36 438 72 HOH HOH . F 4 HOH A 37 439 73 HOH HOH . F 4 HOH A 38 440 74 HOH HOH . F 4 HOH A 39 441 75 HOH HOH . F 4 HOH A 40 442 76 HOH HOH . F 4 HOH A 41 443 79 HOH HOH . F 4 HOH A 42 444 80 HOH HOH . F 4 HOH A 43 445 84 HOH HOH . F 4 HOH A 44 446 85 HOH HOH . F 4 HOH A 45 447 87 HOH HOH . F 4 HOH A 46 448 88 HOH HOH . F 4 HOH A 47 449 90 HOH HOH . F 4 HOH A 48 450 93 HOH HOH . F 4 HOH A 49 451 96 HOH HOH . F 4 HOH A 50 452 97 HOH HOH . F 4 HOH A 51 453 98 HOH HOH . F 4 HOH A 52 454 101 HOH HOH . F 4 HOH A 53 455 103 HOH HOH . F 4 HOH A 54 456 105 HOH HOH . F 4 HOH A 55 457 107 HOH HOH . F 4 HOH A 56 458 108 HOH HOH . F 4 HOH A 57 459 113 HOH HOH . F 4 HOH A 58 460 114 HOH HOH . F 4 HOH A 59 461 115 HOH HOH . F 4 HOH A 60 462 117 HOH HOH . F 4 HOH A 61 463 118 HOH HOH . F 4 HOH A 62 464 120 HOH HOH . F 4 HOH A 63 465 123 HOH HOH . F 4 HOH A 64 466 124 HOH HOH . F 4 HOH A 65 467 128 HOH HOH . F 4 HOH A 66 468 133 HOH HOH . F 4 HOH A 67 469 134 HOH HOH . F 4 HOH A 68 470 136 HOH HOH . F 4 HOH A 69 471 140 HOH HOH . F 4 HOH A 70 472 143 HOH HOH . F 4 HOH A 71 473 144 HOH HOH . F 4 HOH A 72 474 145 HOH HOH . F 4 HOH A 73 475 146 HOH HOH . F 4 HOH A 74 476 150 HOH HOH . F 4 HOH A 75 477 151 HOH HOH . F 4 HOH A 76 478 153 HOH HOH . F 4 HOH A 77 479 156 HOH HOH . F 4 HOH A 78 480 157 HOH HOH . F 4 HOH A 79 481 159 HOH HOH . F 4 HOH A 80 482 162 HOH HOH . F 4 HOH A 81 483 165 HOH HOH . F 4 HOH A 82 484 168 HOH HOH . F 4 HOH A 83 485 169 HOH HOH . F 4 HOH A 84 486 170 HOH HOH . F 4 HOH A 85 487 171 HOH HOH . F 4 HOH A 86 488 173 HOH HOH . F 4 HOH A 87 489 174 HOH HOH . F 4 HOH A 88 490 176 HOH HOH . F 4 HOH A 89 491 177 HOH HOH . F 4 HOH A 90 492 178 HOH HOH . F 4 HOH A 91 493 179 HOH HOH . F 4 HOH A 92 494 183 HOH HOH . F 4 HOH A 93 495 185 HOH HOH . F 4 HOH A 94 496 186 HOH HOH . F 4 HOH A 95 497 189 HOH HOH . F 4 HOH A 96 498 193 HOH HOH . F 4 HOH A 97 499 194 HOH HOH . F 4 HOH A 98 500 199 HOH HOH . F 4 HOH A 99 501 200 HOH HOH . F 4 HOH A 100 502 202 HOH HOH . F 4 HOH A 101 503 203 HOH HOH . F 4 HOH A 102 504 204 HOH HOH . F 4 HOH A 103 505 206 HOH HOH . F 4 HOH A 104 506 207 HOH HOH . F 4 HOH A 105 507 208 HOH HOH . F 4 HOH A 106 508 209 HOH HOH . F 4 HOH A 107 509 210 HOH HOH . F 4 HOH A 108 510 212 HOH HOH . F 4 HOH A 109 511 213 HOH HOH . F 4 HOH A 110 512 214 HOH HOH . F 4 HOH A 111 513 215 HOH HOH . F 4 HOH A 112 514 216 HOH HOH . F 4 HOH A 113 515 218 HOH HOH . F 4 HOH A 114 516 219 HOH HOH . F 4 HOH A 115 517 220 HOH HOH . F 4 HOH A 116 518 222 HOH HOH . F 4 HOH A 117 519 223 HOH HOH . F 4 HOH A 118 520 225 HOH HOH . F 4 HOH A 119 521 228 HOH HOH . F 4 HOH A 120 522 231 HOH HOH . F 4 HOH A 121 523 234 HOH HOH . F 4 HOH A 122 524 236 HOH HOH . F 4 HOH A 123 525 238 HOH HOH . F 4 HOH A 124 526 242 HOH HOH . F 4 HOH A 125 527 243 HOH HOH . F 4 HOH A 126 528 244 HOH HOH . F 4 HOH A 127 529 246 HOH HOH . F 4 HOH A 128 530 247 HOH HOH . F 4 HOH A 129 531 250 HOH HOH . F 4 HOH A 130 532 254 HOH HOH . F 4 HOH A 131 533 255 HOH HOH . F 4 HOH A 132 534 256 HOH HOH . F 4 HOH A 133 535 262 HOH HOH . F 4 HOH A 134 536 263 HOH HOH . F 4 HOH A 135 537 266 HOH HOH . F 4 HOH A 136 538 269 HOH HOH . F 4 HOH A 137 539 273 HOH HOH . F 4 HOH A 138 540 276 HOH HOH . F 4 HOH A 139 541 277 HOH HOH . F 4 HOH A 140 542 279 HOH HOH . F 4 HOH A 141 543 280 HOH HOH . F 4 HOH A 142 544 281 HOH HOH . F 4 HOH A 143 545 285 HOH HOH . F 4 HOH A 144 546 286 HOH HOH . F 4 HOH A 145 547 287 HOH HOH . F 4 HOH A 146 548 290 HOH HOH . F 4 HOH A 147 549 295 HOH HOH . F 4 HOH A 148 550 298 HOH HOH . F 4 HOH A 149 551 299 HOH HOH . F 4 HOH A 150 552 300 HOH HOH . F 4 HOH A 151 553 302 HOH HOH . F 4 HOH A 152 554 307 HOH HOH . F 4 HOH A 153 555 308 HOH HOH . F 4 HOH A 154 556 309 HOH HOH . F 4 HOH A 155 557 310 HOH HOH . F 4 HOH A 156 558 311 HOH HOH . F 4 HOH A 157 559 313 HOH HOH . F 4 HOH A 158 560 316 HOH HOH . F 4 HOH A 159 561 317 HOH HOH . F 4 HOH A 160 562 320 HOH HOH . F 4 HOH A 161 563 321 HOH HOH . F 4 HOH A 162 564 322 HOH HOH . F 4 HOH A 163 565 324 HOH HOH . G 4 HOH B 1 404 5 HOH HOH . G 4 HOH B 2 405 6 HOH HOH . G 4 HOH B 3 406 8 HOH HOH . G 4 HOH B 4 407 11 HOH HOH . G 4 HOH B 5 408 12 HOH HOH . G 4 HOH B 6 409 13 HOH HOH . G 4 HOH B 7 410 17 HOH HOH . G 4 HOH B 8 411 18 HOH HOH . G 4 HOH B 9 412 20 HOH HOH . G 4 HOH B 10 413 21 HOH HOH . G 4 HOH B 11 414 24 HOH HOH . G 4 HOH B 12 415 25 HOH HOH . G 4 HOH B 13 416 26 HOH HOH . G 4 HOH B 14 417 27 HOH HOH . G 4 HOH B 15 418 28 HOH HOH . G 4 HOH B 16 419 29 HOH HOH . G 4 HOH B 17 420 32 HOH HOH . G 4 HOH B 18 421 33 HOH HOH . G 4 HOH B 19 422 34 HOH HOH . G 4 HOH B 20 423 35 HOH HOH . G 4 HOH B 21 424 36 HOH HOH . G 4 HOH B 22 425 39 HOH HOH . G 4 HOH B 23 426 44 HOH HOH . G 4 HOH B 24 427 46 HOH HOH . G 4 HOH B 25 428 49 HOH HOH . G 4 HOH B 26 429 50 HOH HOH . G 4 HOH B 27 430 51 HOH HOH . G 4 HOH B 28 431 52 HOH HOH . G 4 HOH B 29 432 54 HOH HOH . G 4 HOH B 30 433 56 HOH HOH . G 4 HOH B 31 434 57 HOH HOH . G 4 HOH B 32 435 59 HOH HOH . G 4 HOH B 33 436 63 HOH HOH . G 4 HOH B 34 437 65 HOH HOH . G 4 HOH B 35 438 67 HOH HOH . G 4 HOH B 36 439 71 HOH HOH . G 4 HOH B 37 440 77 HOH HOH . G 4 HOH B 38 441 78 HOH HOH . G 4 HOH B 39 442 81 HOH HOH . G 4 HOH B 40 443 82 HOH HOH . G 4 HOH B 41 444 83 HOH HOH . G 4 HOH B 42 445 86 HOH HOH . G 4 HOH B 43 446 89 HOH HOH . G 4 HOH B 44 447 91 HOH HOH . G 4 HOH B 45 448 92 HOH HOH . G 4 HOH B 46 449 94 HOH HOH . G 4 HOH B 47 450 95 HOH HOH . G 4 HOH B 48 451 99 HOH HOH . G 4 HOH B 49 452 100 HOH HOH . G 4 HOH B 50 453 102 HOH HOH . G 4 HOH B 51 454 104 HOH HOH . G 4 HOH B 52 455 106 HOH HOH . G 4 HOH B 53 456 109 HOH HOH . G 4 HOH B 54 457 110 HOH HOH . G 4 HOH B 55 458 111 HOH HOH . G 4 HOH B 56 459 112 HOH HOH . G 4 HOH B 57 460 116 HOH HOH . G 4 HOH B 58 461 119 HOH HOH . G 4 HOH B 59 462 121 HOH HOH . G 4 HOH B 60 463 122 HOH HOH . G 4 HOH B 61 464 125 HOH HOH . G 4 HOH B 62 465 126 HOH HOH . G 4 HOH B 63 466 127 HOH HOH . G 4 HOH B 64 467 129 HOH HOH . G 4 HOH B 65 468 130 HOH HOH . G 4 HOH B 66 469 131 HOH HOH . G 4 HOH B 67 470 132 HOH HOH . G 4 HOH B 68 471 135 HOH HOH . G 4 HOH B 69 472 137 HOH HOH . G 4 HOH B 70 473 138 HOH HOH . G 4 HOH B 71 474 139 HOH HOH . G 4 HOH B 72 475 141 HOH HOH . G 4 HOH B 73 476 142 HOH HOH . G 4 HOH B 74 477 147 HOH HOH . G 4 HOH B 75 478 148 HOH HOH . G 4 HOH B 76 479 149 HOH HOH . G 4 HOH B 77 480 152 HOH HOH . G 4 HOH B 78 481 154 HOH HOH . G 4 HOH B 79 482 155 HOH HOH . G 4 HOH B 80 483 158 HOH HOH . G 4 HOH B 81 484 160 HOH HOH . G 4 HOH B 82 485 161 HOH HOH . G 4 HOH B 83 486 163 HOH HOH . G 4 HOH B 84 487 164 HOH HOH . G 4 HOH B 85 488 166 HOH HOH . G 4 HOH B 86 489 167 HOH HOH . G 4 HOH B 87 490 172 HOH HOH . G 4 HOH B 88 491 175 HOH HOH . G 4 HOH B 89 492 180 HOH HOH . G 4 HOH B 90 493 181 HOH HOH . G 4 HOH B 91 494 182 HOH HOH . G 4 HOH B 92 495 184 HOH HOH . G 4 HOH B 93 496 187 HOH HOH . G 4 HOH B 94 497 188 HOH HOH . G 4 HOH B 95 498 190 HOH HOH . G 4 HOH B 96 499 191 HOH HOH . G 4 HOH B 97 500 192 HOH HOH . G 4 HOH B 98 501 195 HOH HOH . G 4 HOH B 99 502 196 HOH HOH . G 4 HOH B 100 503 197 HOH HOH . G 4 HOH B 101 504 198 HOH HOH . G 4 HOH B 102 505 201 HOH HOH . G 4 HOH B 103 506 205 HOH HOH . G 4 HOH B 104 507 211 HOH HOH . G 4 HOH B 105 508 217 HOH HOH . G 4 HOH B 106 509 221 HOH HOH . G 4 HOH B 107 510 224 HOH HOH . G 4 HOH B 108 511 226 HOH HOH . G 4 HOH B 109 512 227 HOH HOH . G 4 HOH B 110 513 229 HOH HOH . G 4 HOH B 111 514 230 HOH HOH . G 4 HOH B 112 515 232 HOH HOH . G 4 HOH B 113 516 233 HOH HOH . G 4 HOH B 114 517 235 HOH HOH . G 4 HOH B 115 518 237 HOH HOH . G 4 HOH B 116 519 239 HOH HOH . G 4 HOH B 117 520 240 HOH HOH . G 4 HOH B 118 521 241 HOH HOH . G 4 HOH B 119 522 245 HOH HOH . G 4 HOH B 120 523 248 HOH HOH . G 4 HOH B 121 524 249 HOH HOH . G 4 HOH B 122 525 251 HOH HOH . G 4 HOH B 123 526 252 HOH HOH . G 4 HOH B 124 527 253 HOH HOH . G 4 HOH B 125 528 257 HOH HOH . G 4 HOH B 126 529 258 HOH HOH . G 4 HOH B 127 530 259 HOH HOH . G 4 HOH B 128 531 260 HOH HOH . G 4 HOH B 129 532 261 HOH HOH . G 4 HOH B 130 533 264 HOH HOH . G 4 HOH B 131 534 265 HOH HOH . G 4 HOH B 132 535 267 HOH HOH . G 4 HOH B 133 536 268 HOH HOH . G 4 HOH B 134 537 270 HOH HOH . G 4 HOH B 135 538 271 HOH HOH . G 4 HOH B 136 539 272 HOH HOH . G 4 HOH B 137 540 274 HOH HOH . G 4 HOH B 138 541 275 HOH HOH . G 4 HOH B 139 542 278 HOH HOH . G 4 HOH B 140 543 282 HOH HOH . G 4 HOH B 141 544 283 HOH HOH . G 4 HOH B 142 545 284 HOH HOH . G 4 HOH B 143 546 288 HOH HOH . G 4 HOH B 144 547 289 HOH HOH . G 4 HOH B 145 548 291 HOH HOH . G 4 HOH B 146 549 292 HOH HOH . G 4 HOH B 147 550 293 HOH HOH . G 4 HOH B 148 551 294 HOH HOH . G 4 HOH B 149 552 296 HOH HOH . G 4 HOH B 150 553 297 HOH HOH . G 4 HOH B 151 554 301 HOH HOH . G 4 HOH B 152 555 303 HOH HOH . G 4 HOH B 153 556 304 HOH HOH . G 4 HOH B 154 557 305 HOH HOH . G 4 HOH B 155 558 306 HOH HOH . G 4 HOH B 156 559 312 HOH HOH . G 4 HOH B 157 560 314 HOH HOH . G 4 HOH B 158 561 315 HOH HOH . G 4 HOH B 159 562 318 HOH HOH . G 4 HOH B 160 563 319 HOH HOH . G 4 HOH B 161 564 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 15.771 61.385 0.749 1 60.98 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . E 3 16.802 60.441 0.964 1 60.52 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . E 3 15.03 61.714 2.043 1 60.77 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . E 3 14.515 63.028 2.009 1 61.42 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . E 3 13.853 60.773 2.261 1 61.14 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . E 3 13.299 60.976 3.548 1 60.97 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #