data_1XTJ
#
_model_server_result.job_id            4LoHY2opoHTMS4utfBv30A 
_model_server_result.datetime_utc      '2025-03-01 07:17:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xtj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":550}' 
#
_entry.id    1XTJ 
#
_exptl.entry_id    1XTJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.42 
_cell.angle_gamma         90 
_cell.entry_id            1XTJ 
_cell.length_a            36.988 
_cell.length_b            78.201 
_cell.length_c            63.192 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 38 A CYS 75 1_555 A SG CYS 50 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A OE2 GLU 160 A GLU 197 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc2 B MG MG . A MG 501 1_555 C O3B ADP . A ADP 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 8 n n 
PB O2B ADP sing 9 n n 
PB O3B ADP sing 10 n n 
PB O3A ADP sing 11 n n 
O2B HOB2 ADP sing 12 n n 
O3B HOB3 ADP sing 13 n n 
PA O1A ADP doub 14 n n 
PA O2A ADP sing 15 n n 
PA O3A ADP sing 16 n n 
PA O5' ADP sing 17 n n 
O2A HOA2 ADP sing 18 n n 
O5' C5' ADP sing 19 n n 
C5' C4' ADP sing 20 n n 
C5' "H5'1" ADP sing 21 n n 
C5' "H5'2" ADP sing 22 n n 
C4' O4' ADP sing 23 n n 
C4' C3' ADP sing 24 n n 
C4' H4' ADP sing 25 n n 
O4' C1' ADP sing 26 n n 
C3' O3' ADP sing 27 n n 
C3' C2' ADP sing 28 n n 
C3' H3' ADP sing 29 n n 
O3' HO3' ADP sing 30 n n 
C2' O2' ADP sing 31 n n 
C2' C1' ADP sing 32 n n 
C2' H2' ADP sing 33 n n 
O2' HO2' ADP sing 34 n n 
C1' N9 ADP sing 35 n n 
C1' H1' ADP sing 36 n n 
N9 C8 ADP sing 37 n y 
N9 C4 ADP sing 38 n y 
C8 N7 ADP doub 39 n y 
C8 H8 ADP sing 40 n n 
N7 C5 ADP sing 41 n y 
C5 C6 ADP sing 42 n y 
C5 C4 ADP doub 43 n y 
C6 N6 ADP sing 44 n n 
C6 N1 ADP doub 45 n y 
N6 HN61 ADP sing 46 n n 
N6 HN62 ADP sing 47 n n 
N1 C2 ADP sing 48 n y 
C2 N3 ADP doub 49 n y 
C2 H2 ADP sing 50 n n 
N3 C4 ADP sing 51 n y 
#
_atom_sites.entry_id                     1XTJ 
_atom_sites.fract_transf_matrix[1][1]    0.027036 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006451 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 3 ADP A 1 550 550 ADP ADP . 
D 4 ACY A 1 500 500 ACY ACY . 
E 5 HOH A 1 551 1 HOH TIP . 
E 5 HOH A 2 552 2 HOH TIP . 
E 5 HOH A 3 553 3 HOH TIP . 
E 5 HOH A 4 554 4 HOH TIP . 
E 5 HOH A 5 555 5 HOH TIP . 
E 5 HOH A 6 556 6 HOH TIP . 
E 5 HOH A 7 557 7 HOH TIP . 
E 5 HOH A 8 558 8 HOH TIP . 
E 5 HOH A 9 559 9 HOH TIP . 
E 5 HOH A 10 560 10 HOH TIP . 
E 5 HOH A 11 561 11 HOH TIP . 
E 5 HOH A 12 562 12 HOH TIP . 
E 5 HOH A 13 563 13 HOH TIP . 
E 5 HOH A 14 564 14 HOH TIP . 
E 5 HOH A 15 565 15 HOH TIP . 
E 5 HOH A 16 566 16 HOH TIP . 
E 5 HOH A 17 567 17 HOH TIP . 
E 5 HOH A 18 568 18 HOH TIP . 
E 5 HOH A 19 569 19 HOH TIP . 
E 5 HOH A 20 570 20 HOH TIP . 
E 5 HOH A 21 571 21 HOH TIP . 
E 5 HOH A 22 572 22 HOH TIP . 
E 5 HOH A 23 573 23 HOH TIP . 
E 5 HOH A 24 574 24 HOH TIP . 
E 5 HOH A 25 575 25 HOH TIP . 
E 5 HOH A 26 576 26 HOH TIP . 
E 5 HOH A 27 577 27 HOH TIP . 
E 5 HOH A 28 578 28 HOH TIP . 
E 5 HOH A 29 579 29 HOH TIP . 
E 5 HOH A 30 580 30 HOH TIP . 
E 5 HOH A 31 581 31 HOH TIP . 
E 5 HOH A 32 582 32 HOH TIP . 
E 5 HOH A 33 583 33 HOH TIP . 
E 5 HOH A 34 584 34 HOH TIP . 
E 5 HOH A 35 585 35 HOH TIP . 
E 5 HOH A 36 586 36 HOH TIP . 
E 5 HOH A 37 587 37 HOH TIP . 
E 5 HOH A 38 588 38 HOH TIP . 
E 5 HOH A 39 589 39 HOH TIP . 
E 5 HOH A 40 590 40 HOH TIP . 
E 5 HOH A 41 591 41 HOH TIP . 
E 5 HOH A 42 592 42 HOH TIP . 
E 5 HOH A 43 593 43 HOH TIP . 
E 5 HOH A 44 594 44 HOH TIP . 
E 5 HOH A 45 595 45 HOH TIP . 
E 5 HOH A 46 596 46 HOH TIP . 
E 5 HOH A 47 597 47 HOH TIP . 
E 5 HOH A 48 598 48 HOH TIP . 
E 5 HOH A 49 599 49 HOH TIP . 
E 5 HOH A 50 600 50 HOH TIP . 
E 5 HOH A 51 601 51 HOH TIP . 
E 5 HOH A 52 602 52 HOH TIP . 
E 5 HOH A 53 603 53 HOH TIP . 
E 5 HOH A 54 604 54 HOH TIP . 
E 5 HOH A 55 605 55 HOH TIP . 
E 5 HOH A 56 606 56 HOH TIP . 
E 5 HOH A 57 607 57 HOH TIP . 
E 5 HOH A 58 608 58 HOH TIP . 
E 5 HOH A 59 609 59 HOH TIP . 
E 5 HOH A 60 610 60 HOH TIP . 
E 5 HOH A 61 611 61 HOH TIP . 
E 5 HOH A 62 612 62 HOH TIP . 
E 5 HOH A 63 613 63 HOH TIP . 
E 5 HOH A 64 614 64 HOH TIP . 
E 5 HOH A 65 615 65 HOH TIP . 
E 5 HOH A 66 616 66 HOH TIP . 
E 5 HOH A 67 617 67 HOH TIP . 
E 5 HOH A 68 618 68 HOH TIP . 
E 5 HOH A 69 619 69 HOH TIP . 
E 5 HOH A 70 620 70 HOH TIP . 
E 5 HOH A 71 621 71 HOH TIP . 
E 5 HOH A 72 622 72 HOH TIP . 
E 5 HOH A 73 623 73 HOH TIP . 
E 5 HOH A 74 624 74 HOH TIP . 
E 5 HOH A 75 625 75 HOH TIP . 
E 5 HOH A 76 626 76 HOH TIP . 
E 5 HOH A 77 627 77 HOH TIP . 
E 5 HOH A 78 628 78 HOH TIP . 
E 5 HOH A 79 629 79 HOH TIP . 
E 5 HOH A 80 630 80 HOH TIP . 
E 5 HOH A 81 631 81 HOH TIP . 
E 5 HOH A 82 632 82 HOH TIP . 
E 5 HOH A 83 633 83 HOH TIP . 
E 5 HOH A 84 634 84 HOH TIP . 
E 5 HOH A 85 635 85 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -3.149 0.741 9.991 1 44.78 ? PB ADP 550 A 1 
HETATM 2 O O1B ADP . . . C 3 -2.247 1.892 10.218 1 47.11 ? O1B ADP 550 A 1 
HETATM 3 O O2B ADP . . . C 3 -4.595 1.101 9.982 1 42.99 ? O2B ADP 550 A 1 
HETATM 4 O O3B ADP . . . C 3 -2.71 -0.075 8.721 1 46.25 ? O3B ADP 550 A 1 
HETATM 5 P PA ADP . . . C 3 -2.36 -1.622 11.416 1 44.86 ? PA ADP 550 A 1 
HETATM 6 O O1A ADP . . . C 3 -3.225 -2.6 10.643 1 41.65 ? O1A ADP 550 A 1 
HETATM 7 O O2A ADP . . . C 3 -0.901 -1.64 11.053 1 44.56 ? O2A ADP 550 A 1 
HETATM 8 O O3A ADP . . . C 3 -2.922 -0.165 11.268 1 43.22 ? O3A ADP 550 A 1 
HETATM 9 O O5' ADP . . . C 3 -2.682 -1.945 12.938 1 43.86 ? O5' ADP 550 A 1 
HETATM 10 C C5' ADP . . . C 3 -2.042 -1.166 13.994 1 41.85 ? C5' ADP 550 A 1 
HETATM 11 C C4' ADP . . . C 3 -1.235 -1.967 15.012 1 41.92 ? C4' ADP 550 A 1 
HETATM 12 O O4' ADP . . . C 3 -2.079 -2.424 16.095 1 42.66 ? O4' ADP 550 A 1 
HETATM 13 C C3' ADP . . . C 3 -0.519 -3.228 14.51 1 41.42 ? C3' ADP 550 A 1 
HETATM 14 O O3' ADP . . . C 3 0.797 -3.251 15.106 1 43.24 ? O3' ADP 550 A 1 
HETATM 15 C C2' ADP . . . C 3 -1.452 -4.371 14.922 1 40.99 ? C2' ADP 550 A 1 
HETATM 16 O O2' ADP . . . C 3 -0.735 -5.557 15.314 1 42.77 ? O2' ADP 550 A 1 
HETATM 17 C C1' ADP . . . C 3 -2.238 -3.829 16.126 1 42.17 ? C1' ADP 550 A 1 
HETATM 18 N N9 ADP . . . C 3 -3.722 -4.177 16.1 1 40.01 ? N9 ADP 550 A 1 
HETATM 19 C C8 ADP . . . C 3 -4.554 -4.237 15.026 1 39.19 ? C8 ADP 550 A 1 
HETATM 20 N N7 ADP . . . C 3 -5.817 -4.579 15.353 1 38.44 ? N7 ADP 550 A 1 
HETATM 21 C C5 ADP . . . C 3 -5.774 -4.739 16.697 1 36.87 ? C5 ADP 550 A 1 
HETATM 22 C C6 ADP . . . C 3 -6.801 -5.107 17.655 1 34.81 ? C6 ADP 550 A 1 
HETATM 23 N N6 ADP . . . C 3 -8.024 -5.363 17.392 1 32.3 ? N6 ADP 550 A 1 
HETATM 24 N N1 ADP . . . C 3 -6.357 -5.17 18.964 1 35.12 ? N1 ADP 550 A 1 
HETATM 25 C C2 ADP . . . C 3 -5.05 -4.911 19.347 1 35.52 ? C2 ADP 550 A 1 
HETATM 26 N N3 ADP . . . C 3 -4.094 -4.571 18.482 1 37.55 ? N3 ADP 550 A 1 
HETATM 27 C C4 ADP . . . C 3 -4.489 -4.497 17.182 1 38.21 ? C4 ADP 550 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#