data_1XTO # _model_server_result.job_id ijv0JDYCZVshlClTnq6OrA _model_server_result.datetime_utc '2025-08-31 05:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":312}' # _entry.id 1XTO # _exptl.entry_id 1XTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XTO _cell.length_a 86.051 _cell.length_b 86.051 _cell.length_c 110.666 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 110.666 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C PRO 69 A PRO 69 1_555 A N MSE 70 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 70 A MSE 70 1_555 A N GLN 71 A GLN 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ASP 112 A ASP 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C MSE 113 A MSE 113 1_555 A N VAL 114 A VAL 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C ASN 126 A ASN 126 1_555 A N MSE 127 A MSE 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 127 A MSE 127 1_555 A N LEU 128 A LEU 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C LEU 183 A LEU 183 1_555 A N MSE 184 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 184 A MSE 184 1_555 A N VAL 185 A VAL 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C ALA 209 A ALA 209 1_555 A N MSE 210 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C MSE 210 A MSE 210 1_555 A N MSE 211 A MSE 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 211 A MSE 211 1_555 A N HIS 212 A HIS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C GLU 228 A GLU 228 1_555 A N MSE 229 A MSE 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C MSE 229 A MSE 229 1_555 A N GLN 230 A GLN 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C GLU 241 A GLU 241 1_555 A N MSE 242 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale16 A C MSE 242 A MSE 242 1_555 A N GLY 243 A GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale17 A C GLY 252 A GLY 252 1_555 A N MSE 253 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 A C MSE 253 A MSE 253 1_555 A N LEU 254 A LEU 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 A C GLY 298 A GLY 298 1_555 A N MSE 299 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 A C MSE 299 A MSE 299 1_555 A N SER 300 A SER 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A SG CYS 19 A CYS 19 1_555 B ZN ZN . A ZN 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A SG CYS 21 A CYS 21 1_555 B ZN ZN . A ZN 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A SG CYS 24 A CYS 24 1_555 B ZN ZN . A ZN 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XTO _atom_sites.fract_transf_matrix[1][1] 0.011621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 312 1 ZN ZN . C 3 HOH A 1 313 1 HOH HOH . C 3 HOH A 2 314 2 HOH HOH . C 3 HOH A 3 315 3 HOH HOH . C 3 HOH A 4 316 4 HOH HOH . C 3 HOH A 5 317 5 HOH HOH . C 3 HOH A 6 318 6 HOH HOH . C 3 HOH A 7 319 7 HOH HOH . C 3 HOH A 8 320 8 HOH HOH . C 3 HOH A 9 321 9 HOH HOH . C 3 HOH A 10 322 10 HOH HOH . C 3 HOH A 11 323 11 HOH HOH . C 3 HOH A 12 324 12 HOH HOH . C 3 HOH A 13 325 13 HOH HOH . C 3 HOH A 14 326 14 HOH HOH . C 3 HOH A 15 327 15 HOH HOH . C 3 HOH A 16 328 16 HOH HOH . C 3 HOH A 17 329 17 HOH HOH . C 3 HOH A 18 330 18 HOH HOH . C 3 HOH A 19 331 19 HOH HOH . C 3 HOH A 20 332 20 HOH HOH . C 3 HOH A 21 333 21 HOH HOH . C 3 HOH A 22 334 22 HOH HOH . C 3 HOH A 23 335 23 HOH HOH . C 3 HOH A 24 336 24 HOH HOH . C 3 HOH A 25 337 25 HOH HOH . C 3 HOH A 26 338 26 HOH HOH . C 3 HOH A 27 339 27 HOH HOH . C 3 HOH A 28 340 28 HOH HOH . C 3 HOH A 29 341 29 HOH HOH . C 3 HOH A 30 342 30 HOH HOH . C 3 HOH A 31 343 31 HOH HOH . C 3 HOH A 32 344 32 HOH HOH . C 3 HOH A 33 345 33 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 45.714 _atom_site.Cartn_y 68.028 _atom_site.Cartn_z 47.976 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 312 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #