data_1XTR # _model_server_result.job_id rV5I-rbpvmbisEin1oxyHA _model_server_result.datetime_utc '2024-11-13 18:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":179}' # _entry.id 1XTR # _exptl.entry_id 1XTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XTR _cell.length_a 102.93 _cell.length_b 99.16 _cell.length_c 47.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 20 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OG1 THR 38 A THR 38 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 B MG MG . A MG 178 1_555 C O2G GNP . A GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 B MG MG . A MG 178 1_555 C O2B GNP . A GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc5 B MG MG . A MG 178 1_555 E O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 B MG MG . A MG 178 1_555 E O HOH . A HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 116 n n PG O2G GNP sing 117 n n PG O3G GNP sing 118 n n PG N3B GNP sing 119 n n O2G HOG2 GNP sing 120 n n O3G HOG3 GNP sing 121 n n N3B PB GNP sing 122 n n N3B HNB3 GNP sing 123 n n PB O1B GNP doub 124 n n PB O2B GNP sing 125 n n PB O3A GNP sing 126 n n O2B HOB2 GNP sing 127 n n O3A PA GNP sing 128 n n PA O1A GNP doub 129 n n PA O2A GNP sing 130 n n PA O5' GNP sing 131 n n O2A HOA2 GNP sing 132 n n O5' C5' GNP sing 133 n n C5' C4' GNP sing 134 n n C5' "H5'2" GNP sing 135 n n C5' "H5'1" GNP sing 136 n n C4' O4' GNP sing 137 n n C4' C3' GNP sing 138 n n C4' H4' GNP sing 139 n n O4' C1' GNP sing 140 n n C3' O3' GNP sing 141 n n C3' C2' GNP sing 142 n n C3' H3' GNP sing 143 n n O3' HO3' GNP sing 144 n n C2' O2' GNP sing 145 n n C2' C1' GNP sing 146 n n C2' H2' GNP sing 147 n n O2' HO2' GNP sing 148 n n C1' N9 GNP sing 149 n n C1' H1' GNP sing 150 n n N9 C8 GNP sing 151 n y N9 C4 GNP sing 152 n y C8 N7 GNP doub 153 n y C8 H8 GNP sing 154 n n N7 C5 GNP sing 155 n y C5 C6 GNP sing 156 n y C5 C4 GNP doub 157 n y C6 O6 GNP doub 158 n n C6 N1 GNP sing 159 n y N1 C2 GNP sing 160 n y N1 HN1 GNP sing 161 n n C2 N2 GNP sing 162 n n C2 N3 GNP doub 163 n y N2 HN21 GNP sing 164 n n N2 HN22 GNP sing 165 n n N3 C4 GNP sing 166 n y # _atom_sites.entry_id 1XTR _atom_sites.fract_transf_matrix[1][1] 0.009715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 178 2 MG MG . C 3 GNP A 1 179 1 GNP GNP . D 4 GOL A 1 180 1 GOL GOL . E 5 HOH A 1 181 2 HOH TIP . E 5 HOH A 2 182 3 HOH TIP . E 5 HOH A 3 183 4 HOH TIP . E 5 HOH A 4 184 5 HOH TIP . E 5 HOH A 5 185 6 HOH TIP . E 5 HOH A 6 186 7 HOH TIP . E 5 HOH A 7 187 8 HOH TIP . E 5 HOH A 8 188 9 HOH TIP . E 5 HOH A 9 189 10 HOH TIP . E 5 HOH A 10 190 11 HOH TIP . E 5 HOH A 11 191 12 HOH TIP . E 5 HOH A 12 192 13 HOH TIP . E 5 HOH A 13 193 14 HOH TIP . E 5 HOH A 14 194 15 HOH TIP . E 5 HOH A 15 195 16 HOH TIP . E 5 HOH A 16 196 17 HOH TIP . E 5 HOH A 17 197 18 HOH TIP . E 5 HOH A 18 198 19 HOH TIP . E 5 HOH A 19 199 20 HOH TIP . E 5 HOH A 20 200 21 HOH TIP . E 5 HOH A 21 201 22 HOH TIP . E 5 HOH A 22 202 23 HOH TIP . E 5 HOH A 23 203 24 HOH TIP . E 5 HOH A 24 204 25 HOH TIP . E 5 HOH A 25 205 26 HOH TIP . E 5 HOH A 26 206 27 HOH TIP . E 5 HOH A 27 207 28 HOH TIP . E 5 HOH A 28 208 29 HOH TIP . E 5 HOH A 29 209 30 HOH TIP . E 5 HOH A 30 210 31 HOH TIP . E 5 HOH A 31 211 32 HOH TIP . E 5 HOH A 32 212 33 HOH TIP . E 5 HOH A 33 213 34 HOH TIP . E 5 HOH A 34 214 35 HOH TIP . E 5 HOH A 35 215 36 HOH TIP . E 5 HOH A 36 216 37 HOH TIP . E 5 HOH A 37 217 38 HOH TIP . E 5 HOH A 38 218 39 HOH TIP . E 5 HOH A 39 219 40 HOH TIP . E 5 HOH A 40 220 41 HOH TIP . E 5 HOH A 41 221 42 HOH TIP . E 5 HOH A 42 222 43 HOH TIP . E 5 HOH A 43 223 44 HOH TIP . E 5 HOH A 44 224 45 HOH TIP . E 5 HOH A 45 225 46 HOH TIP . E 5 HOH A 46 226 47 HOH TIP . E 5 HOH A 47 227 48 HOH TIP . E 5 HOH A 48 228 49 HOH TIP . E 5 HOH A 49 229 50 HOH TIP . E 5 HOH A 50 230 51 HOH TIP . E 5 HOH A 51 231 52 HOH TIP . E 5 HOH A 52 232 53 HOH TIP . E 5 HOH A 53 233 54 HOH TIP . E 5 HOH A 54 234 55 HOH TIP . E 5 HOH A 55 235 56 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 30.732 93.104 59.717 1 33.73 ? PG GNP 179 A 1 HETATM 2 O O1G GNP . . . C 3 30.585 93.85 58.452 1 35.06 ? O1G GNP 179 A 1 HETATM 3 O O2G GNP . . . C 3 31.351 93.947 60.699 1 35.96 ? O2G GNP 179 A 1 HETATM 4 O O3G GNP . . . C 3 31.731 91.96 59.567 1 34.56 ? O3G GNP 179 A 1 HETATM 5 N N3B GNP . . . C 3 29.333 92.456 60.161 1 32.34 ? N3B GNP 179 A 1 HETATM 6 P PB GNP . . . C 3 29.109 91.552 61.508 1 30.24 ? PB GNP 179 A 1 HETATM 7 O O1B GNP . . . C 3 29.678 90.22 61.328 1 29.53 ? O1B GNP 179 A 1 HETATM 8 O O2B GNP . . . C 3 29.53 92.179 62.741 1 28.19 ? O2B GNP 179 A 1 HETATM 9 O O3A GNP . . . C 3 27.512 91.44 61.604 1 31.29 ? O3A GNP 179 A 1 HETATM 10 P PA GNP . . . C 3 26.476 92.375 62.478 1 32.57 ? PA GNP 179 A 1 HETATM 11 O O1A GNP . . . C 3 26.643 92.084 63.93 1 33.69 ? O1A GNP 179 A 1 HETATM 12 O O2A GNP . . . C 3 26.571 93.776 62.042 1 33.92 ? O2A GNP 179 A 1 HETATM 13 O O5' GNP . . . C 3 25.082 91.722 62.04 1 32.85 ? O5' GNP 179 A 1 HETATM 14 C C5' GNP . . . C 3 24.651 91.856 60.646 1 30.76 ? C5' GNP 179 A 1 HETATM 15 C C4' GNP . . . C 3 23.12 91.879 60.534 1 28.74 ? C4' GNP 179 A 1 HETATM 16 O O4' GNP . . . C 3 22.595 90.579 60.921 1 29.08 ? O4' GNP 179 A 1 HETATM 17 C C3' GNP . . . C 3 22.441 92.934 61.451 1 28.13 ? C3' GNP 179 A 1 HETATM 18 O O3' GNP . . . C 3 21.397 93.618 60.729 1 29.15 ? O3' GNP 179 A 1 HETATM 19 C C2' GNP . . . C 3 21.961 92.08 62.612 1 28.91 ? C2' GNP 179 A 1 HETATM 20 O O2' GNP . . . C 3 20.799 92.592 63.258 1 28.16 ? O2' GNP 179 A 1 HETATM 21 C C1' GNP . . . C 3 21.662 90.722 61.995 1 29.43 ? C1' GNP 179 A 1 HETATM 22 N N9 GNP . . . C 3 21.852 89.638 62.999 1 30.17 ? N9 GNP 179 A 1 HETATM 23 C C8 GNP . . . C 3 22.994 89.287 63.722 1 29 ? C8 GNP 179 A 1 HETATM 24 N N7 GNP . . . C 3 22.847 88.291 64.534 1 26.82 ? N7 GNP 179 A 1 HETATM 25 C C5 GNP . . . C 3 21.499 87.919 64.365 1 28.03 ? C5 GNP 179 A 1 HETATM 26 C C6 GNP . . . C 3 20.709 86.871 64.99 1 28.51 ? C6 GNP 179 A 1 HETATM 27 O O6 GNP . . . C 3 21.052 86.041 65.84 1 29.32 ? O6 GNP 179 A 1 HETATM 28 N N1 GNP . . . C 3 19.388 86.852 64.528 1 29.23 ? N1 GNP 179 A 1 HETATM 29 C C2 GNP . . . C 3 18.839 87.709 63.581 1 28.65 ? C2 GNP 179 A 1 HETATM 30 N N2 GNP . . . C 3 17.54 87.54 63.261 1 28.27 ? N2 GNP 179 A 1 HETATM 31 N N3 GNP . . . C 3 19.568 88.69 62.989 1 28.9 ? N3 GNP 179 A 1 HETATM 32 C C4 GNP . . . C 3 20.882 88.745 63.419 1 29.21 ? C4 GNP 179 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 32 #