data_1XTR # _model_server_result.job_id LYZP2Zgn4zmhyzQP_Zvhng _model_server_result.datetime_utc '2024-11-13 18:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":180}' # _entry.id 1XTR # _exptl.entry_id 1XTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XTR _cell.length_a 102.93 _cell.length_b 99.16 _cell.length_c 47.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 20 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OG1 THR 38 A THR 38 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 B MG MG . A MG 178 1_555 C O2G GNP . A GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 B MG MG . A MG 178 1_555 C O2B GNP . A GNP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc5 B MG MG . A MG 178 1_555 E O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 B MG MG . A MG 178 1_555 E O HOH . A HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 167 n n C1 C2 GOL sing 168 n n C1 H11 GOL sing 169 n n C1 H12 GOL sing 170 n n O1 HO1 GOL sing 171 n n C2 O2 GOL sing 172 n n C2 C3 GOL sing 173 n n C2 H2 GOL sing 174 n n O2 HO2 GOL sing 175 n n C3 O3 GOL sing 176 n n C3 H31 GOL sing 177 n n C3 H32 GOL sing 178 n n O3 HO3 GOL sing 179 n n # _atom_sites.entry_id 1XTR _atom_sites.fract_transf_matrix[1][1] 0.009715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 178 2 MG MG . C 3 GNP A 1 179 1 GNP GNP . D 4 GOL A 1 180 1 GOL GOL . E 5 HOH A 1 181 2 HOH TIP . E 5 HOH A 2 182 3 HOH TIP . E 5 HOH A 3 183 4 HOH TIP . E 5 HOH A 4 184 5 HOH TIP . E 5 HOH A 5 185 6 HOH TIP . E 5 HOH A 6 186 7 HOH TIP . E 5 HOH A 7 187 8 HOH TIP . E 5 HOH A 8 188 9 HOH TIP . E 5 HOH A 9 189 10 HOH TIP . E 5 HOH A 10 190 11 HOH TIP . E 5 HOH A 11 191 12 HOH TIP . E 5 HOH A 12 192 13 HOH TIP . E 5 HOH A 13 193 14 HOH TIP . E 5 HOH A 14 194 15 HOH TIP . E 5 HOH A 15 195 16 HOH TIP . E 5 HOH A 16 196 17 HOH TIP . E 5 HOH A 17 197 18 HOH TIP . E 5 HOH A 18 198 19 HOH TIP . E 5 HOH A 19 199 20 HOH TIP . E 5 HOH A 20 200 21 HOH TIP . E 5 HOH A 21 201 22 HOH TIP . E 5 HOH A 22 202 23 HOH TIP . E 5 HOH A 23 203 24 HOH TIP . E 5 HOH A 24 204 25 HOH TIP . E 5 HOH A 25 205 26 HOH TIP . E 5 HOH A 26 206 27 HOH TIP . E 5 HOH A 27 207 28 HOH TIP . E 5 HOH A 28 208 29 HOH TIP . E 5 HOH A 29 209 30 HOH TIP . E 5 HOH A 30 210 31 HOH TIP . E 5 HOH A 31 211 32 HOH TIP . E 5 HOH A 32 212 33 HOH TIP . E 5 HOH A 33 213 34 HOH TIP . E 5 HOH A 34 214 35 HOH TIP . E 5 HOH A 35 215 36 HOH TIP . E 5 HOH A 36 216 37 HOH TIP . E 5 HOH A 37 217 38 HOH TIP . E 5 HOH A 38 218 39 HOH TIP . E 5 HOH A 39 219 40 HOH TIP . E 5 HOH A 40 220 41 HOH TIP . E 5 HOH A 41 221 42 HOH TIP . E 5 HOH A 42 222 43 HOH TIP . E 5 HOH A 43 223 44 HOH TIP . E 5 HOH A 44 224 45 HOH TIP . E 5 HOH A 45 225 46 HOH TIP . E 5 HOH A 46 226 47 HOH TIP . E 5 HOH A 47 227 48 HOH TIP . E 5 HOH A 48 228 49 HOH TIP . E 5 HOH A 49 229 50 HOH TIP . E 5 HOH A 50 230 51 HOH TIP . E 5 HOH A 51 231 52 HOH TIP . E 5 HOH A 52 232 53 HOH TIP . E 5 HOH A 53 233 54 HOH TIP . E 5 HOH A 54 234 55 HOH TIP . E 5 HOH A 55 235 56 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 40.738 92.186 59.268 1 51.01 ? C1 GOL 180 A 1 HETATM 2 O O1 GOL . . . D 4 39.495 91.621 59.765 1 51.95 ? O1 GOL 180 A 1 HETATM 3 C C2 GOL . . . D 4 40.63 92.494 57.74 1 50.69 ? C2 GOL 180 A 1 HETATM 4 O O2 GOL . . . D 4 41.633 91.814 57.002 1 49.31 ? O2 GOL 180 A 1 HETATM 5 C C3 GOL . . . D 4 39.238 92.121 57.202 1 49.88 ? C3 GOL 180 A 1 HETATM 6 O O3 GOL . . . D 4 39.038 92.42 55.825 1 47.9 ? O3 GOL 180 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #