data_1XTS # _model_server_result.job_id zUu34iUxeb0nUeFXWAiDwg _model_server_result.datetime_utc '2024-11-28 01:45:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":179}' # _entry.id 1XTS # _exptl.entry_id 1XTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XTS _cell.length_a 102.41 _cell.length_b 98.39 _cell.length_c 47.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 20 A SER 20 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc2 A OG1 THR 38 A THR 38 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc3 B MG MG . A MG 178 1_555 C O3G GTP . A GTP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 B MG MG . A MG 178 1_555 C O1B GTP . A GTP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 B MG MG . A MG 178 1_555 C O3B GTP . A GTP 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc6 B MG MG . A MG 178 1_555 D O HOH . A HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 1XTS _atom_sites.fract_transf_matrix[1][1] 0.009765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 178 2 MG MG . C 3 GTP A 1 179 1 GTP GTP . D 4 HOH A 1 180 1 HOH TIP . D 4 HOH A 2 181 2 HOH TIP . D 4 HOH A 3 182 3 HOH TIP . D 4 HOH A 4 183 4 HOH TIP . D 4 HOH A 5 184 5 HOH TIP . D 4 HOH A 6 185 6 HOH TIP . D 4 HOH A 7 186 7 HOH TIP . D 4 HOH A 8 187 8 HOH TIP . D 4 HOH A 9 188 9 HOH TIP . D 4 HOH A 10 189 10 HOH TIP . D 4 HOH A 11 190 11 HOH TIP . D 4 HOH A 12 191 12 HOH TIP . D 4 HOH A 13 192 13 HOH TIP . D 4 HOH A 14 193 14 HOH TIP . D 4 HOH A 15 194 15 HOH TIP . D 4 HOH A 16 195 16 HOH TIP . D 4 HOH A 17 196 17 HOH TIP . D 4 HOH A 18 197 18 HOH TIP . D 4 HOH A 19 198 19 HOH TIP . D 4 HOH A 20 199 20 HOH TIP . D 4 HOH A 21 200 21 HOH TIP . D 4 HOH A 22 201 22 HOH TIP . D 4 HOH A 23 202 23 HOH TIP . D 4 HOH A 24 203 24 HOH TIP . D 4 HOH A 25 204 25 HOH TIP . D 4 HOH A 26 205 26 HOH TIP . D 4 HOH A 27 206 27 HOH TIP . D 4 HOH A 28 207 28 HOH TIP . D 4 HOH A 29 208 29 HOH TIP . D 4 HOH A 30 209 30 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 -30.668 92.109 -59.949 1 36.66 ? PG GTP 179 A 1 HETATM 2 O O1G GTP . . . C 3 -30.675 92.795 -58.637 1 37.04 ? O1G GTP 179 A 1 HETATM 3 O O2G GTP . . . C 3 -31.498 90.73 -59.933 1 36.32 ? O2G GTP 179 A 1 HETATM 4 O O3G GTP . . . C 3 -31.323 93.001 -61.116 1 36.93 ? O3G GTP 179 A 1 HETATM 5 O O3B GTP . . . C 3 -29.185 91.728 -60.443 1 37.03 ? O3B GTP 179 A 1 HETATM 6 P PB GTP . . . C 3 -28.972 90.788 -61.733 1 37.29 ? PB GTP 179 A 1 HETATM 7 O O1B GTP . . . C 3 -29.366 91.551 -62.939 1 37.87 ? O1B GTP 179 A 1 HETATM 8 O O2B GTP . . . C 3 -29.655 89.504 -61.46 1 38.21 ? O2B GTP 179 A 1 HETATM 9 O O3A GTP . . . C 3 -27.381 90.533 -61.753 1 36.12 ? O3A GTP 179 A 1 HETATM 10 P PA GTP . . . C 3 -26.379 91.574 -62.465 1 33.86 ? PA GTP 179 A 1 HETATM 11 O O1A GTP . . . C 3 -26.67 92.933 -61.954 1 31.91 ? O1A GTP 179 A 1 HETATM 12 O O2A GTP . . . C 3 -26.454 91.336 -63.924 1 30.81 ? O2A GTP 179 A 1 HETATM 13 O O5' GTP . . . C 3 -24.932 91.108 -61.937 1 32.99 ? O5' GTP 179 A 1 HETATM 14 C C5' GTP . . . C 3 -24.565 91.296 -60.566 1 31.32 ? C5' GTP 179 A 1 HETATM 15 C C4' GTP . . . C 3 -23.053 91.148 -60.376 1 31.7 ? C4' GTP 179 A 1 HETATM 16 O O4' GTP . . . C 3 -22.65 89.868 -60.898 1 29.49 ? O4' GTP 179 A 1 HETATM 17 C C3' GTP . . . C 3 -22.325 92.205 -61.21 1 32.46 ? C3' GTP 179 A 1 HETATM 18 O O3' GTP . . . C 3 -21.08 92.55 -60.595 1 35.3 ? O3' GTP 179 A 1 HETATM 19 C C2' GTP . . . C 3 -22.084 91.45 -62.516 1 32.46 ? C2' GTP 179 A 1 HETATM 20 O O2' GTP . . . C 3 -20.976 92.033 -63.207 1 31.92 ? O2' GTP 179 A 1 HETATM 21 C C1' GTP . . . C 3 -21.675 90.097 -61.93 1 31.27 ? C1' GTP 179 A 1 HETATM 22 N N9 GTP . . . C 3 -21.727 89.018 -62.945 1 32.41 ? N9 GTP 179 A 1 HETATM 23 C C8 GTP . . . C 3 -22.792 88.691 -63.674 1 34.09 ? C8 GTP 179 A 1 HETATM 24 N N7 GTP . . . C 3 -22.502 87.662 -64.466 1 33.63 ? N7 GTP 179 A 1 HETATM 25 C C5 GTP . . . C 3 -21.234 87.33 -64.243 1 34.85 ? C5 GTP 179 A 1 HETATM 26 C C6 GTP . . . C 3 -20.401 86.36 -64.785 1 36.58 ? C6 GTP 179 A 1 HETATM 27 O O6 GTP . . . C 3 -20.819 85.6 -65.659 1 38.57 ? O6 GTP 179 A 1 HETATM 28 N N1 GTP . . . C 3 -19.075 86.281 -64.34 1 35.45 ? N1 GTP 179 A 1 HETATM 29 C C2 GTP . . . C 3 -18.625 87.179 -63.364 1 36.27 ? C2 GTP 179 A 1 HETATM 30 N N2 GTP . . . C 3 -17.363 87.124 -62.95 1 39.08 ? N2 GTP 179 A 1 HETATM 31 N N3 GTP . . . C 3 -19.462 88.1 -62.861 1 34.87 ? N3 GTP 179 A 1 HETATM 32 C C4 GTP . . . C 3 -20.736 88.194 -63.273 1 33.63 ? C4 GTP 179 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 658 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #