data_1XTU
#
_model_server_result.job_id            AfIfctSYK_QWhmoqFOhpDQ 
_model_server_result.datetime_utc      '2024-10-14 07:23:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xtu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":8260}' 
#
_entry.id    1XTU 
#
_exptl.entry_id    1XTU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109 
_cell.angle_beta          90.76 
_cell.angle_gamma         115.4 
_cell.entry_id            1XTU 
_cell.length_a            71.67 
_cell.length_b            76.51 
_cell.length_c            91.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XTU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H,I,J,N,O,P,Q,W,X 1 1 
B,C,F,G,K,L,M,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CTP sing 70 n n 
N1 C6 CTP sing 71 n n 
N1 C1' CTP sing 72 n n 
C2 N3 CTP sing 73 n n 
C2 O2 CTP doub 74 n n 
N3 C4 CTP doub 75 n n 
C4 C5 CTP sing 76 n n 
C4 N4 CTP sing 77 n n 
C5 C6 CTP doub 78 n n 
C5 H5 CTP sing 79 n n 
C6 H6 CTP sing 80 n n 
N4 HN41 CTP sing 81 n n 
N4 HN42 CTP sing 82 n n 
C1' C2' CTP sing 83 n n 
C1' O4' CTP sing 84 n n 
C1' H1' CTP sing 85 n n 
C2' O2' CTP sing 86 n n 
C2' C3' CTP sing 87 n n 
C2' H2' CTP sing 88 n n 
O2' HO2' CTP sing 89 n n 
C3' C4' CTP sing 90 n n 
C3' O3' CTP sing 91 n n 
C3' H3' CTP sing 92 n n 
C4' O4' CTP sing 93 n n 
C4' C5' CTP sing 94 n n 
C4' H4' CTP sing 95 n n 
O3' HO3' CTP sing 96 n n 
C5' O5' CTP sing 97 n n 
C5' "H5'1" CTP sing 98 n n 
C5' "H5'2" CTP sing 99 n n 
O5' PA CTP sing 100 n n 
PA O1A CTP doub 101 n n 
PA O2A CTP sing 102 n n 
PA O3A CTP sing 103 n n 
O2A HOA2 CTP sing 104 n n 
O3A PB CTP sing 105 n n 
PB O1B CTP doub 106 n n 
PB O2B CTP sing 107 n n 
PB O3B CTP sing 108 n n 
O2B HOB2 CTP sing 109 n n 
O3B PG CTP sing 110 n n 
PG O1G CTP doub 111 n n 
PG O2G CTP sing 112 n n 
PG O3G CTP sing 113 n n 
O2G HOG2 CTP sing 114 n n 
O3G HOG3 CTP sing 115 n n 
#
_atom_sites.entry_id                     1XTU 
_atom_sites.fract_transf_matrix[1][1]    0.013953 
_atom_sites.fract_transf_matrix[1][2]    0.006625 
_atom_sites.fract_transf_matrix[1][3]    0.002811 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014469 
_atom_sites.fract_transf_matrix[2][3]    0.005704 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011755 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 U5P A 1 1250 250 U5P U5P . 
J 3 CTP A 1 1260 260 CTP CTP . 
K 2 U5P B 1 2250 250 U5P U5P . 
L 2 U5P C 1 3250 250 U5P U5P . 
M 3 CTP C 1 3260 260 CTP CTP . 
N 2 U5P D 1 4250 250 U5P U5P . 
O 3 CTP D 1 4260 260 CTP CTP . 
P 2 U5P E 1 5250 250 U5P U5P . 
Q 3 CTP E 1 5260 260 CTP CTP . 
R 2 U5P F 1 6250 250 U5P U5P . 
S 3 CTP F 1 6260 260 CTP CTP . 
T 2 U5P G 1 7250 250 U5P U5P . 
U 3 CTP G 1 2260 260 CTP CTP . 
V 3 CTP G 1 7260 260 CTP CTP . 
W 2 U5P H 1 8250 250 U5P U5P . 
X 3 CTP H 1 8260 260 CTP CTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . X 3 -0.216 8.17 -14.535 1 44.59 ? N1 CTP 8260 H 1 
HETATM 2 C C2 CTP . . . X 3 -1.148 9.217 -14.594 1 44.99 ? C2 CTP 8260 H 1 
HETATM 3 N N3 CTP . . . X 3 -2.499 8.851 -14.409 1 45.06 ? N3 CTP 8260 H 1 
HETATM 4 C C4 CTP . . . X 3 -2.874 7.498 -14.178 1 46.15 ? C4 CTP 8260 H 1 
HETATM 5 C C5 CTP . . . X 3 -1.958 6.47 -14.119 1 46.02 ? C5 CTP 8260 H 1 
HETATM 6 C C6 CTP . . . X 3 -0.558 6.831 -14.31 1 43.26 ? C6 CTP 8260 H 1 
HETATM 7 O O2 CTP . . . X 3 -0.864 10.435 -14.799 1 46.9 ? O2 CTP 8260 H 1 
HETATM 8 N N4 CTP . . . X 3 -4.256 7.26 -14.007 1 42.78 ? N4 CTP 8260 H 1 
HETATM 9 C C1' CTP . . . X 3 1.323 8.557 -14.756 1 49.97 ? C1' CTP 8260 H 1 
HETATM 10 C C2' CTP . . . X 3 2.096 8.739 -13.483 1 51.04 ? C2' CTP 8260 H 1 
HETATM 11 O O2' CTP . . . X 3 3.089 9.764 -13.666 1 50.23 ? O2' CTP 8260 H 1 
HETATM 12 C C3' CTP . . . X 3 2.632 7.382 -13.23 1 53.99 ? C3' CTP 8260 H 1 
HETATM 13 C C4' CTP . . . X 3 3.115 6.986 -14.701 1 55.89 ? C4' CTP 8260 H 1 
HETATM 14 O O4' CTP . . . X 3 1.947 7.483 -15.538 1 52.55 ? O4' CTP 8260 H 1 
HETATM 15 O O3' CTP . . . X 3 3.829 7.42 -12.455 1 54.47 ? O3' CTP 8260 H 1 
HETATM 16 C C5' CTP . . . X 3 3.556 5.444 -14.786 1 64.78 ? C5' CTP 8260 H 1 
HETATM 17 O O5' CTP . . . X 3 2.733 4.59 -15.682 1 74.37 ? O5' CTP 8260 H 1 
HETATM 18 P PA CTP . . . X 3 3.106 2.805 -15.781 1 83.96 ? PA CTP 8260 H 1 
HETATM 19 O O1A CTP . . . X 3 2.014 1.946 -14.979 1 81.62 ? O1A CTP 8260 H 1 
HETATM 20 O O2A CTP . . . X 3 3.492 2.508 -17.319 1 84.03 ? O2A CTP 8260 H 1 
HETATM 21 O O3A CTP . . . X 3 4.542 2.845 -14.855 1 88.86 ? O3A CTP 8260 H 1 
HETATM 22 P PB CTP . . . X 3 6.015 2.545 -15.57 1 93.42 ? PB CTP 8260 H 1 
HETATM 23 O O1B CTP . . . X 3 6.329 3.754 -16.723 1 93.2 ? O1B CTP 8260 H 1 
HETATM 24 O O2B CTP . . . X 3 5.999 1.202 -16.392 1 95.46 ? O2B CTP 8260 H 1 
HETATM 25 O O3B CTP . . . X 3 7.114 2.642 -14.422 1 96.41 ? O3B CTP 8260 H 1 
HETATM 26 P PG CTP . . . X 3 7.239 4.237 -13.834 1 100.73 ? PG CTP 8260 H 1 
HETATM 27 O O1G CTP . . . X 3 5.905 4.635 -13.14 1 101.13 ? O1G CTP 8260 H 1 
HETATM 28 O O2G CTP . . . X 3 7.683 5.169 -15.024 1 99.62 ? O2G CTP 8260 H 1 
HETATM 29 O O3G CTP . . . X 3 8.419 4.284 -12.618 1 100 ? O3G CTP 8260 H 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           29 
#