data_1XU1 # _model_server_result.job_id CaJVzZ10OOIqmEVYWJLtGg _model_server_result.datetime_utc '2024-11-22 05:52:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 1XU1 # _exptl.entry_id 1XU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XU1 _cell.length_a 59.339 _cell.length_b 91.839 _cell.length_c 102.268 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 187 1_555 A SG CYS 99 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 84 B CYS 187 1_555 B SG CYS 99 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 84 D CYS 187 1_555 C SG CYS 99 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 4 R CYS 71 1_555 D SG CYS 19 R CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 D SG CYS 22 R CYS 89 1_555 D SG CYS 33 R CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf6 D SG CYS 26 R CYS 93 1_555 D SG CYS 37 R CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 E SG CYS 4 S CYS 71 1_555 E SG CYS 19 S CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 E SG CYS 22 S CYS 89 1_555 E SG CYS 33 S CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf9 E SG CYS 26 S CYS 93 1_555 E SG CYS 37 S CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 F SG CYS 4 T CYS 71 1_555 F SG CYS 19 T CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 F SG CYS 22 T CYS 89 1_555 F SG CYS 33 T CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf12 F SG CYS 26 T CYS 93 1_555 F SG CYS 37 T CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 G NI NI . A NI 101 1_555 A NE2 HIS 3 A HIS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc2 G NI NI . A NI 101 1_555 H O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 G NI NI . A NI 101 1_555 B NE2 HIS 3 B HIS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc4 G NI NI . A NI 101 1_555 C NE2 HIS 3 D HIS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 G NI NI . A NI 101 1_555 J O HOH . D HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc6 G NI NI . A NI 101 1_555 J O HOH . D HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XU1 _atom_sites.fract_transf_matrix[1][1] 0.016852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NI A 1 101 101 NI NI . H 4 HOH A 1 242 102 HOH HOH . H 4 HOH A 2 243 106 HOH HOH . H 4 HOH A 3 244 108 HOH HOH . H 4 HOH A 4 245 110 HOH HOH . H 4 HOH A 5 246 117 HOH HOH . H 4 HOH A 6 247 118 HOH HOH . H 4 HOH A 7 248 120 HOH HOH . H 4 HOH A 8 249 121 HOH HOH . H 4 HOH A 9 250 125 HOH HOH . H 4 HOH A 10 251 127 HOH HOH . H 4 HOH A 11 252 129 HOH HOH . H 4 HOH A 12 253 134 HOH HOH . H 4 HOH A 13 254 135 HOH HOH . H 4 HOH A 14 255 136 HOH HOH . H 4 HOH A 15 256 139 HOH HOH . H 4 HOH A 16 257 140 HOH HOH . H 4 HOH A 17 258 141 HOH HOH . H 4 HOH A 18 259 146 HOH HOH . H 4 HOH A 19 260 148 HOH HOH . H 4 HOH A 20 261 154 HOH HOH . H 4 HOH A 21 262 177 HOH HOH . H 4 HOH A 22 263 178 HOH HOH . H 4 HOH A 23 264 183 HOH HOH . H 4 HOH A 24 265 185 HOH HOH . H 4 HOH A 25 266 192 HOH HOH . H 4 HOH A 26 267 196 HOH HOH . H 4 HOH A 27 268 200 HOH HOH . H 4 HOH A 28 269 202 HOH HOH . H 4 HOH A 29 270 203 HOH HOH . H 4 HOH A 30 271 205 HOH HOH . H 4 HOH A 31 272 211 HOH HOH . H 4 HOH A 32 273 223 HOH HOH . I 4 HOH B 1 242 104 HOH HOH . I 4 HOH B 2 243 105 HOH HOH . I 4 HOH B 3 244 115 HOH HOH . I 4 HOH B 4 245 116 HOH HOH . I 4 HOH B 5 246 122 HOH HOH . I 4 HOH B 6 247 123 HOH HOH . I 4 HOH B 7 248 124 HOH HOH . I 4 HOH B 8 249 128 HOH HOH . I 4 HOH B 9 250 133 HOH HOH . I 4 HOH B 10 251 137 HOH HOH . I 4 HOH B 11 252 138 HOH HOH . I 4 HOH B 12 253 142 HOH HOH . I 4 HOH B 13 254 144 HOH HOH . I 4 HOH B 14 255 149 HOH HOH . I 4 HOH B 15 256 150 HOH HOH . I 4 HOH B 16 257 157 HOH HOH . I 4 HOH B 17 258 159 HOH HOH . I 4 HOH B 18 259 163 HOH HOH . I 4 HOH B 19 260 168 HOH HOH . I 4 HOH B 20 261 170 HOH HOH . I 4 HOH B 21 262 171 HOH HOH . I 4 HOH B 22 263 172 HOH HOH . I 4 HOH B 23 264 174 HOH HOH . I 4 HOH B 24 265 179 HOH HOH . I 4 HOH B 25 266 182 HOH HOH . I 4 HOH B 26 267 184 HOH HOH . I 4 HOH B 27 268 190 HOH HOH . I 4 HOH B 28 269 201 HOH HOH . I 4 HOH B 29 270 206 HOH HOH . I 4 HOH B 30 271 210 HOH HOH . I 4 HOH B 31 272 213 HOH HOH . I 4 HOH B 32 273 215 HOH HOH . I 4 HOH B 33 274 216 HOH HOH . I 4 HOH B 34 275 217 HOH HOH . I 4 HOH B 35 276 220 HOH HOH . J 4 HOH D 1 242 103 HOH HOH . J 4 HOH D 2 243 107 HOH HOH . J 4 HOH D 3 244 109 HOH HOH . J 4 HOH D 4 245 111 HOH HOH . J 4 HOH D 5 246 112 HOH HOH . J 4 HOH D 6 247 113 HOH HOH . J 4 HOH D 7 248 114 HOH HOH . J 4 HOH D 8 249 119 HOH HOH . J 4 HOH D 9 250 130 HOH HOH . J 4 HOH D 10 251 132 HOH HOH . J 4 HOH D 11 252 143 HOH HOH . J 4 HOH D 12 253 145 HOH HOH . J 4 HOH D 13 254 147 HOH HOH . J 4 HOH D 14 255 151 HOH HOH . J 4 HOH D 15 256 155 HOH HOH . J 4 HOH D 16 257 161 HOH HOH . J 4 HOH D 17 258 162 HOH HOH . J 4 HOH D 18 259 164 HOH HOH . J 4 HOH D 19 260 165 HOH HOH . J 4 HOH D 20 261 167 HOH HOH . J 4 HOH D 21 262 169 HOH HOH . J 4 HOH D 22 263 173 HOH HOH . J 4 HOH D 23 264 176 HOH HOH . J 4 HOH D 24 265 186 HOH HOH . J 4 HOH D 25 266 188 HOH HOH . J 4 HOH D 26 267 191 HOH HOH . J 4 HOH D 27 268 194 HOH HOH . J 4 HOH D 28 269 195 HOH HOH . J 4 HOH D 29 270 197 HOH HOH . J 4 HOH D 30 271 198 HOH HOH . J 4 HOH D 31 272 204 HOH HOH . J 4 HOH D 32 273 209 HOH HOH . J 4 HOH D 33 274 218 HOH HOH . J 4 HOH D 34 275 219 HOH HOH . J 4 HOH D 35 276 222 HOH HOH . J 4 HOH D 36 277 226 HOH HOH . J 4 HOH D 37 278 227 HOH HOH . J 4 HOH D 38 279 228 HOH HOH . J 4 HOH D 39 280 230 HOH HOH . J 4 HOH D 40 281 235 HOH HOH . K 4 HOH R 1 156 156 HOH HOH . K 4 HOH R 2 158 158 HOH HOH . K 4 HOH R 3 180 180 HOH HOH . K 4 HOH R 4 189 189 HOH HOH . K 4 HOH R 5 199 199 HOH HOH . K 4 HOH R 6 212 212 HOH HOH . K 4 HOH R 7 225 225 HOH HOH . K 4 HOH R 8 229 229 HOH HOH . L 4 HOH S 1 131 131 HOH HOH . L 4 HOH S 2 166 166 HOH HOH . L 4 HOH S 3 181 181 HOH HOH . L 4 HOH S 4 193 193 HOH HOH . L 4 HOH S 5 208 208 HOH HOH . L 4 HOH S 6 221 221 HOH HOH . L 4 HOH S 7 232 232 HOH HOH . L 4 HOH S 8 233 233 HOH HOH . M 4 HOH T 1 126 126 HOH HOH . M 4 HOH T 2 152 152 HOH HOH . M 4 HOH T 3 153 153 HOH HOH . M 4 HOH T 4 160 160 HOH HOH . M 4 HOH T 5 175 175 HOH HOH . M 4 HOH T 6 187 187 HOH HOH . M 4 HOH T 7 207 207 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.112 _atom_site.Cartn_y 4.256 _atom_site.Cartn_z 4.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 8.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #