data_1XVJ # _model_server_result.job_id yjioE1pZnyodsgn61aL8_A _model_server_result.datetime_utc '2024-10-18 16:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":522}' # _entry.id 1XVJ # _exptl.entry_id 1XVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.81 _cell.angle_gamma 90 _cell.entry_id 1XVJ _cell.length_a 30.719 _cell.length_b 56.988 _cell.length_c 56.493 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A OD1 ASP 53 A ASP 53 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OG SER 55 A SER 55 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A O PHE 57 A PHE 57 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 A OE1 GLU 59 A GLU 59 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc6 A OE1 GLU 62 A GLU 62 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc7 A OE2 GLU 62 A GLU 62 1_555 C CA CA . A CA 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc8 A OD1 ASP 90 A ASP 90 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc9 A OD1 ASP 92 A ASP 92 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 A OG SER 94 A SER 94 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc11 A O LYS 96 A LYS 96 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc12 A OE2 GLU 98 A GLU 98 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc13 A OE2 GLU 101 A GLU 101 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc14 A OE1 GLU 101 A GLU 101 1_555 D CA CA . A CA 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc15 B OD1 ASP 51 B ASP 51 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc16 B OD1 ASP 53 B ASP 53 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc17 B OG SER 55 B SER 55 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc18 B O PHE 57 B PHE 57 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc19 B OE1 GLU 59 B GLU 59 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc20 B OE1 GLU 62 B GLU 62 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc21 B OE2 GLU 62 B GLU 62 1_555 E CA CA . B CA 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc22 B OD1 ASP 90 B ASP 90 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc23 B OD1 ASP 92 B ASP 92 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc24 B OG SER 94 B SER 94 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc25 B O LYS 96 B LYS 96 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc26 B OE2 GLU 98 B GLU 98 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc27 B OE1 GLU 101 B GLU 101 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc28 B OE2 GLU 101 B GLU 101 1_555 F CA CA . B CA 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XVJ _atom_sites.fract_transf_matrix[1][1] 0.032553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 421 421 CA CA . D 2 CA A 1 422 422 CA CA . E 2 CA B 1 521 421 CA CA . F 2 CA B 1 522 422 CA CA . G 3 HOH A 1 423 3 HOH HOH . G 3 HOH A 2 424 5 HOH HOH . G 3 HOH A 3 425 9 HOH HOH . G 3 HOH A 4 426 10 HOH HOH . G 3 HOH A 5 427 12 HOH HOH . G 3 HOH A 6 428 15 HOH HOH . G 3 HOH A 7 429 16 HOH HOH . G 3 HOH A 8 430 17 HOH HOH . G 3 HOH A 9 431 18 HOH HOH . G 3 HOH A 10 432 19 HOH HOH . G 3 HOH A 11 433 24 HOH HOH . G 3 HOH A 12 434 29 HOH HOH . G 3 HOH A 13 435 30 HOH HOH . G 3 HOH A 14 436 31 HOH HOH . G 3 HOH A 15 437 34 HOH HOH . G 3 HOH A 16 438 35 HOH HOH . G 3 HOH A 17 439 37 HOH HOH . G 3 HOH A 18 440 38 HOH HOH . G 3 HOH A 19 441 42 HOH HOH . G 3 HOH A 20 442 52 HOH HOH . G 3 HOH A 21 443 53 HOH HOH . G 3 HOH A 22 444 54 HOH HOH . G 3 HOH A 23 445 57 HOH HOH . G 3 HOH A 24 446 58 HOH HOH . G 3 HOH A 25 447 60 HOH HOH . G 3 HOH A 26 448 61 HOH HOH . G 3 HOH A 27 449 64 HOH HOH . G 3 HOH A 28 450 65 HOH HOH . G 3 HOH A 29 451 68 HOH HOH . G 3 HOH A 30 452 70 HOH HOH . G 3 HOH A 31 453 71 HOH HOH . G 3 HOH A 32 454 73 HOH HOH . G 3 HOH A 33 455 77 HOH HOH . G 3 HOH A 34 456 78 HOH HOH . G 3 HOH A 35 457 79 HOH HOH . G 3 HOH A 36 458 80 HOH HOH . G 3 HOH A 37 459 81 HOH HOH . G 3 HOH A 38 460 82 HOH HOH . G 3 HOH A 39 461 83 HOH HOH . G 3 HOH A 40 462 84 HOH HOH . G 3 HOH A 41 463 87 HOH HOH . G 3 HOH A 42 464 88 HOH HOH . G 3 HOH A 43 465 91 HOH HOH . G 3 HOH A 44 466 94 HOH HOH . G 3 HOH A 45 467 96 HOH HOH . G 3 HOH A 46 468 99 HOH HOH . G 3 HOH A 47 469 103 HOH HOH . G 3 HOH A 48 470 105 HOH HOH . G 3 HOH A 49 471 108 HOH HOH . G 3 HOH A 50 472 110 HOH HOH . G 3 HOH A 51 473 111 HOH HOH . G 3 HOH A 52 474 112 HOH HOH . G 3 HOH A 53 475 118 HOH HOH . G 3 HOH A 54 476 122 HOH HOH . G 3 HOH A 55 477 124 HOH HOH . G 3 HOH A 56 478 125 HOH HOH . G 3 HOH A 57 479 129 HOH HOH . G 3 HOH A 58 480 131 HOH HOH . G 3 HOH A 59 481 133 HOH HOH . G 3 HOH A 60 482 136 HOH HOH . G 3 HOH A 61 483 140 HOH HOH . G 3 HOH A 62 484 141 HOH HOH . G 3 HOH A 63 485 142 HOH HOH . G 3 HOH A 64 486 143 HOH HOH . G 3 HOH A 65 487 144 HOH HOH . G 3 HOH A 66 488 145 HOH HOH . G 3 HOH A 67 489 146 HOH HOH . G 3 HOH A 68 490 148 HOH HOH . G 3 HOH A 69 491 149 HOH HOH . G 3 HOH A 70 492 151 HOH HOH . G 3 HOH A 71 493 152 HOH HOH . G 3 HOH A 72 494 153 HOH HOH . G 3 HOH A 73 495 155 HOH HOH . G 3 HOH A 74 496 158 HOH HOH . G 3 HOH A 75 497 159 HOH HOH . G 3 HOH A 76 498 160 HOH HOH . G 3 HOH A 77 499 163 HOH HOH . G 3 HOH A 78 500 167 HOH HOH . G 3 HOH A 79 501 169 HOH HOH . G 3 HOH A 80 502 171 HOH HOH . G 3 HOH A 81 503 172 HOH HOH . G 3 HOH A 82 504 174 HOH HOH . G 3 HOH A 83 505 180 HOH HOH . G 3 HOH A 84 506 183 HOH HOH . G 3 HOH A 85 507 188 HOH HOH . G 3 HOH A 86 508 199 HOH HOH . H 3 HOH B 1 523 1 HOH HOH . H 3 HOH B 2 524 2 HOH HOH . H 3 HOH B 3 525 4 HOH HOH . H 3 HOH B 4 526 6 HOH HOH . H 3 HOH B 5 527 7 HOH HOH . H 3 HOH B 6 528 8 HOH HOH . H 3 HOH B 7 529 11 HOH HOH . H 3 HOH B 8 530 13 HOH HOH . H 3 HOH B 9 531 14 HOH HOH . H 3 HOH B 10 532 20 HOH HOH . H 3 HOH B 11 533 21 HOH HOH . H 3 HOH B 12 534 22 HOH HOH . H 3 HOH B 13 535 23 HOH HOH . H 3 HOH B 14 536 25 HOH HOH . H 3 HOH B 15 537 26 HOH HOH . H 3 HOH B 16 538 27 HOH HOH . H 3 HOH B 17 539 28 HOH HOH . H 3 HOH B 18 540 32 HOH HOH . H 3 HOH B 19 541 33 HOH HOH . H 3 HOH B 20 542 36 HOH HOH . H 3 HOH B 21 543 39 HOH HOH . H 3 HOH B 22 544 40 HOH HOH . H 3 HOH B 23 545 41 HOH HOH . H 3 HOH B 24 546 43 HOH HOH . H 3 HOH B 25 547 44 HOH HOH . H 3 HOH B 26 548 45 HOH HOH . H 3 HOH B 27 549 46 HOH HOH . H 3 HOH B 28 550 47 HOH HOH . H 3 HOH B 29 551 48 HOH HOH . H 3 HOH B 30 552 49 HOH HOH . H 3 HOH B 31 553 50 HOH HOH . H 3 HOH B 32 554 51 HOH HOH . H 3 HOH B 33 555 55 HOH HOH . H 3 HOH B 34 556 56 HOH HOH . H 3 HOH B 35 557 59 HOH HOH . H 3 HOH B 36 558 62 HOH HOH . H 3 HOH B 37 559 63 HOH HOH . H 3 HOH B 38 560 66 HOH HOH . H 3 HOH B 39 561 67 HOH HOH . H 3 HOH B 40 562 69 HOH HOH . H 3 HOH B 41 563 72 HOH HOH . H 3 HOH B 42 564 74 HOH HOH . H 3 HOH B 43 565 75 HOH HOH . H 3 HOH B 44 566 76 HOH HOH . H 3 HOH B 45 567 85 HOH HOH . H 3 HOH B 46 568 86 HOH HOH . H 3 HOH B 47 569 89 HOH HOH . H 3 HOH B 48 570 90 HOH HOH . H 3 HOH B 49 571 92 HOH HOH . H 3 HOH B 50 572 93 HOH HOH . H 3 HOH B 51 573 95 HOH HOH . H 3 HOH B 52 574 97 HOH HOH . H 3 HOH B 53 575 98 HOH HOH . H 3 HOH B 54 576 100 HOH HOH . H 3 HOH B 55 577 101 HOH HOH . H 3 HOH B 56 578 104 HOH HOH . H 3 HOH B 57 579 106 HOH HOH . H 3 HOH B 58 580 107 HOH HOH . H 3 HOH B 59 581 109 HOH HOH . H 3 HOH B 60 582 113 HOH HOH . H 3 HOH B 61 583 114 HOH HOH . H 3 HOH B 62 584 115 HOH HOH . H 3 HOH B 63 585 116 HOH HOH . H 3 HOH B 64 586 117 HOH HOH . H 3 HOH B 65 587 119 HOH HOH . H 3 HOH B 66 588 120 HOH HOH . H 3 HOH B 67 589 121 HOH HOH . H 3 HOH B 68 590 123 HOH HOH . H 3 HOH B 69 591 126 HOH HOH . H 3 HOH B 70 592 127 HOH HOH . H 3 HOH B 71 593 128 HOH HOH . H 3 HOH B 72 594 130 HOH HOH . H 3 HOH B 73 595 132 HOH HOH . H 3 HOH B 74 596 134 HOH HOH . H 3 HOH B 75 597 135 HOH HOH . H 3 HOH B 76 598 137 HOH HOH . H 3 HOH B 77 599 138 HOH HOH . H 3 HOH B 78 600 139 HOH HOH . H 3 HOH B 79 601 147 HOH HOH . H 3 HOH B 80 602 150 HOH HOH . H 3 HOH B 81 603 154 HOH HOH . H 3 HOH B 82 604 156 HOH HOH . H 3 HOH B 83 605 157 HOH HOH . H 3 HOH B 84 606 161 HOH HOH . H 3 HOH B 85 607 162 HOH HOH . H 3 HOH B 86 608 164 HOH HOH . H 3 HOH B 87 609 165 HOH HOH . H 3 HOH B 88 610 166 HOH HOH . H 3 HOH B 89 611 168 HOH HOH . H 3 HOH B 90 612 170 HOH HOH . H 3 HOH B 91 613 173 HOH HOH . H 3 HOH B 92 614 175 HOH HOH . H 3 HOH B 93 615 176 HOH HOH . H 3 HOH B 94 616 177 HOH HOH . H 3 HOH B 95 617 178 HOH HOH . H 3 HOH B 96 618 179 HOH HOH . H 3 HOH B 97 619 181 HOH HOH . H 3 HOH B 98 620 182 HOH HOH . H 3 HOH B 99 621 184 HOH HOH . H 3 HOH B 100 622 185 HOH HOH . H 3 HOH B 101 623 186 HOH HOH . H 3 HOH B 102 624 187 HOH HOH . H 3 HOH B 103 625 189 HOH HOH . H 3 HOH B 104 626 190 HOH HOH . H 3 HOH B 105 627 191 HOH HOH . H 3 HOH B 106 628 192 HOH HOH . H 3 HOH B 107 629 193 HOH HOH . H 3 HOH B 108 630 194 HOH HOH . H 3 HOH B 109 631 195 HOH HOH . H 3 HOH B 110 632 197 HOH HOH . H 3 HOH B 111 633 198 HOH HOH . H 3 HOH B 112 634 200 HOH HOH . H 3 HOH B 113 635 201 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.542 _atom_site.Cartn_y -5.714 _atom_site.Cartn_z -32.932 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 522 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #