data_1XVK
#
_model_server_result.job_id            zg-TUgGbBRc1vMVXT97NKA 
_model_server_result.datetime_utc      '2024-12-18 23:07:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":25}' 
#
_entry.id    1XVK 
#
_exptl.entry_id    1XVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XVK 
_cell.length_a            39.183 
_cell.length_b            39.183 
_cell.length_c            79.89 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C QUI . B QUI 0 1_555 B N DSN 1 B DSN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
covale ? covale2 B C DSN 1 B DSN 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 B OG DSN 1 B DSN 1 1_555 B C MVA 8 B MVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C ALA 2 B ALA 2 1_555 B N NCY 3 B NCY 3 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.347 ? 
covale ? covale5 B C ALA 2 B ALA 2 1_555 B N N2C 3 B N2C 3 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.347 ? 
covale ? covale6 B C N2C 3 B N2C 3 1_555 B N MVA 4 B MVA 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? 
covale ? covale7 B C NCY 3 B NCY 3 1_555 B N MVA 4 B MVA 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 B SG NCY 3 B NCY 3 1_555 B CB N2C 7 B N2C 7 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.794 ? 
covale ? covale9 B CB N2C 3 B N2C 3 1_555 B SG NCY 7 B NCY 7 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.809 ? 
covale ? covale10 B C MVA 4 B MVA 4 1_555 B OG DSN 5 B DSN 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.318 ? 
covale ? covale11 B C MVA 4 B MVA 4 1_555 B OG DSN 5 B DSN 5 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.311 ? 
covale ? covale12 B C DSN 5 B DSN 5 1_555 B N ALA 6 B ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 B N DSN 5 B DSN 5 1_555 E C QUI . B QUI 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale14 B C ALA 6 B ALA 6 1_555 B N NCY 7 B NCY 7 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 B C ALA 6 B ALA 6 1_555 B N N2C 7 B N2C 7 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? 
covale ? covale16 B C NCY 7 B NCY 7 1_555 B N MVA 8 B MVA 8 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale17 B C N2C 7 B N2C 7 1_555 B N MVA 8 B MVA 8 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.319 ? 
metalc ? metalc1 C MG MG . A MG 25 1_555 F O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc2 C MG MG . A MG 25 1_555 F O HOH . A HOH 2018 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc3 C MG MG . A MG 25 1_555 F O HOH . A HOH 2018 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc4 C MG MG . A MG 25 1_555 F O HOH . A HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 C MG MG . A MG 25 1_555 F O HOH . A HOH 2020 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc6 C MG MG . A MG 25 1_555 F O HOH . A HOH 2020 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
hydrog 'DG-DC PAIR' hydrog1 A O6 DG 1 A DG 1 1_555 A N4 DC 8 A DC 8 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N3 DC 2 A DC 2 1_555 A N1 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N4 DC 2 A DC 2 1_555 A O6 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A O2 DC 2 A DC 2 1_555 A N2 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N1 DG 3 A DG 3 1_555 A N3 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N2 DG 3 A DG 3 1_555 A O2 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A O6 DG 3 A DG 3 1_555 A N4 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog HOOGSTEEN hydrog8 A N3 DT 4 A DT 4 1_555 A N7 DA 5 A DA 5 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog HOOGSTEEN hydrog9 A O4 DT 4 A DT 4 1_555 A N6 DA 5 A DA 5 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog HOOGSTEEN hydrog10 A N6 DA 5 A DA 5 1_555 A O4 DT 4 A DT 4 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog HOOGSTEEN hydrog11 A N7 DA 5 A DA 5 1_555 A N3 DT 4 A DT 4 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DC 6 A DC 6 1_555 A N1 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N4 DC 6 A DC 6 1_555 A O6 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O2 DC 6 A DC 6 1_555 A N2 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N1 DG 7 A DG 7 1_555 A N3 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N2 DG 7 A DG 7 1_555 A O2 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O6 DG 7 A DG 7 1_555 A N4 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog18 A N4 DC 8 A DC 8 1_555 A O6 DG 1 A DG 1 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XVK 
_atom_sites.fract_transf_matrix[1][1]    0.025521 
_atom_sites.fract_transf_matrix[1][2]    0.014735 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 25 25 MG MG . 
D 4 QUI B 1 0 0 QUI QUI . 
E 4 QUI B 1 9 9 QUI QUI . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
G 5 HOH B 1 2001 2001 HOH HOH . 
G 5 HOH B 2 2002 2002 HOH HOH . 
G 5 HOH B 3 2003 2003 HOH HOH . 
G 5 HOH B 4 2004 2004 HOH HOH . 
G 5 HOH B 5 2005 2005 HOH HOH . 
G 5 HOH B 6 2006 2006 HOH HOH . 
G 5 HOH B 7 2007 2007 HOH HOH . 
G 5 HOH B 8 2008 2008 HOH HOH . 
G 5 HOH B 9 2009 2009 HOH HOH . 
G 5 HOH B 10 2010 2010 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               0 
_atom_site.Cartn_y               22.622 
_atom_site.Cartn_z               5.295 
_atom_site.occupancy             0.33 
_atom_site.B_iso_or_equiv        20.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           25 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           206 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#