data_1XVP
#
_model_server_result.job_id            mKUHA3B-Wtfb4jSYOvDrOA 
_model_server_result.datetime_utc      '2025-08-05 07:14:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1002}' 
#
_entry.id    1XVP 
#
_exptl.entry_id    1XVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.397 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTADECANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XVP 
_cell.length_a            128.02 
_cell.length_b            128.02 
_cell.length_c            212.175 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,L,M,P,Q 1 1 
C,D,G,H,J,K,N,O,R,S 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 3 1 
A,B,C,D,E,G,I,J,K,L,M,N,O,P,R 4 1 
A,C,E,G,I,J,L,N,P,R 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C15 H30 O2' 
_chem_comp.formula_weight    242.397 
_chem_comp.id                F15 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTADECANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O2 F15 sing 125 n n 
C1 O3 F15 doub 126 n n 
C1 C4 F15 sing 127 n n 
O2 HO2 F15 sing 128 n n 
C4 C5 F15 sing 129 n n 
C4 H22 F15 sing 130 n n 
C4 H23 F15 sing 131 n n 
C5 C8 F15 sing 132 n n 
C5 H24 F15 sing 133 n n 
C5 H25 F15 sing 134 n n 
C6 C7 F15 sing 135 n n 
C6 C8 F15 sing 136 n n 
C6 H26 F15 sing 137 n n 
C6 H1 F15 sing 138 n n 
C7 C9 F15 sing 139 n n 
C7 H27 F15 sing 140 n n 
C7 H2 F15 sing 141 n n 
C8 H28 F15 sing 142 n n 
C8 H29 F15 sing 143 n n 
C9 C10 F15 sing 144 n n 
C9 H30 F15 sing 145 n n 
C9 H31 F15 sing 146 n n 
C10 C11 F15 sing 147 n n 
C10 H33 F15 sing 148 n n 
C10 H5 F15 sing 149 n n 
C11 C12 F15 sing 150 n n 
C11 H34 F15 sing 151 n n 
C11 H6 F15 sing 152 n n 
C12 C13 F15 sing 153 n n 
C12 H36 F15 sing 154 n n 
C12 H37 F15 sing 155 n n 
C13 C2 F15 sing 156 n n 
C13 H3 F15 sing 157 n n 
C13 H4 F15 sing 158 n n 
C2 C3 F15 sing 159 n n 
C2 H7 F15 sing 160 n n 
C2 H8 F15 sing 161 n n 
C3 C14 F15 sing 162 n n 
C3 H9 F15 sing 163 n n 
C3 H10 F15 sing 164 n n 
C14 C15 F15 sing 165 n n 
C14 H11 F15 sing 166 n n 
C14 H12 F15 sing 167 n n 
C15 H13 F15 sing 168 n n 
C15 H14 F15 sing 169 n n 
C15 H15 F15 sing 170 n n 
#
_atom_sites.entry_id                     1XVP 
_atom_sites.fract_transf_matrix[1][1]    0.007811 
_atom_sites.fract_transf_matrix[1][2]    0.00451 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 F15 A 1 1002 1 F15 FA . 
J 4 F15 C 1 1001 1 F15 FA . 
K 5 CID D 1 1003 1 CID BEN . 
L 6 HOH A 1 14 14 HOH HOH . 
L 6 HOH A 2 19 19 HOH HOH . 
L 6 HOH A 3 21 21 HOH HOH . 
L 6 HOH A 4 23 23 HOH HOH . 
L 6 HOH A 5 30 30 HOH HOH . 
L 6 HOH A 6 31 31 HOH HOH . 
L 6 HOH A 7 33 33 HOH HOH . 
L 6 HOH A 8 35 35 HOH HOH . 
L 6 HOH A 9 37 37 HOH HOH . 
L 6 HOH A 10 41 41 HOH HOH . 
L 6 HOH A 11 48 48 HOH HOH . 
L 6 HOH A 12 57 57 HOH HOH . 
L 6 HOH A 13 67 67 HOH HOH . 
L 6 HOH A 14 70 70 HOH HOH . 
L 6 HOH A 15 73 73 HOH HOH . 
L 6 HOH A 16 77 77 HOH HOH . 
L 6 HOH A 17 78 78 HOH HOH . 
L 6 HOH A 18 100 100 HOH HOH . 
L 6 HOH A 19 101 101 HOH HOH . 
L 6 HOH A 20 102 102 HOH HOH . 
L 6 HOH A 21 104 104 HOH HOH . 
L 6 HOH A 22 105 105 HOH HOH . 
M 6 HOH B 1 2 2 HOH HOH . 
M 6 HOH B 2 3 3 HOH HOH . 
M 6 HOH B 3 5 5 HOH HOH . 
M 6 HOH B 4 7 7 HOH HOH . 
M 6 HOH B 5 20 20 HOH HOH . 
M 6 HOH B 6 32 32 HOH HOH . 
M 6 HOH B 7 40 40 HOH HOH . 
M 6 HOH B 8 44 44 HOH HOH . 
M 6 HOH B 9 49 49 HOH HOH . 
M 6 HOH B 10 53 53 HOH HOH . 
M 6 HOH B 11 54 54 HOH HOH . 
M 6 HOH B 12 63 63 HOH HOH . 
M 6 HOH B 13 64 64 HOH HOH . 
M 6 HOH B 14 66 66 HOH HOH . 
M 6 HOH B 15 68 68 HOH HOH . 
M 6 HOH B 16 69 69 HOH HOH . 
M 6 HOH B 17 72 72 HOH HOH . 
M 6 HOH B 18 79 79 HOH HOH . 
M 6 HOH B 19 80 80 HOH HOH . 
M 6 HOH B 20 89 89 HOH HOH . 
M 6 HOH B 21 91 91 HOH HOH . 
N 6 HOH C 1 4 4 HOH HOH . 
N 6 HOH C 2 8 8 HOH HOH . 
N 6 HOH C 3 11 11 HOH HOH . 
N 6 HOH C 4 16 16 HOH HOH . 
N 6 HOH C 5 22 22 HOH HOH . 
N 6 HOH C 6 24 24 HOH HOH . 
N 6 HOH C 7 34 34 HOH HOH . 
N 6 HOH C 8 36 36 HOH HOH . 
N 6 HOH C 9 38 38 HOH HOH . 
N 6 HOH C 10 46 46 HOH HOH . 
N 6 HOH C 11 47 47 HOH HOH . 
N 6 HOH C 12 51 51 HOH HOH . 
N 6 HOH C 13 52 52 HOH HOH . 
N 6 HOH C 14 62 62 HOH HOH . 
N 6 HOH C 15 65 65 HOH HOH . 
N 6 HOH C 16 71 71 HOH HOH . 
N 6 HOH C 17 75 75 HOH HOH . 
N 6 HOH C 18 76 76 HOH HOH . 
N 6 HOH C 19 84 84 HOH HOH . 
N 6 HOH C 20 85 85 HOH HOH . 
N 6 HOH C 21 88 88 HOH HOH . 
N 6 HOH C 22 93 93 HOH HOH . 
N 6 HOH C 23 96 96 HOH HOH . 
N 6 HOH C 24 97 97 HOH HOH . 
N 6 HOH C 25 99 99 HOH HOH . 
N 6 HOH C 26 106 106 HOH HOH . 
O 6 HOH D 1 1004 1 HOH HOH . 
O 6 HOH D 2 1005 6 HOH HOH . 
O 6 HOH D 3 1006 9 HOH HOH . 
O 6 HOH D 4 1007 10 HOH HOH . 
O 6 HOH D 5 1008 15 HOH HOH . 
O 6 HOH D 6 1009 17 HOH HOH . 
O 6 HOH D 7 1010 25 HOH HOH . 
O 6 HOH D 8 1011 27 HOH HOH . 
O 6 HOH D 9 1012 28 HOH HOH . 
O 6 HOH D 10 1013 29 HOH HOH . 
O 6 HOH D 11 1014 39 HOH HOH . 
O 6 HOH D 12 1015 43 HOH HOH . 
O 6 HOH D 13 1016 50 HOH HOH . 
O 6 HOH D 14 1017 55 HOH HOH . 
O 6 HOH D 15 1018 60 HOH HOH . 
O 6 HOH D 16 1019 61 HOH HOH . 
O 6 HOH D 17 1020 81 HOH HOH . 
O 6 HOH D 18 1021 82 HOH HOH . 
O 6 HOH D 19 1022 83 HOH HOH . 
O 6 HOH D 20 1023 86 HOH HOH . 
O 6 HOH D 21 1024 87 HOH HOH . 
O 6 HOH D 22 1025 94 HOH HOH . 
O 6 HOH D 23 1026 95 HOH HOH . 
O 6 HOH D 24 1027 103 HOH HOH . 
P 6 HOH E 1 58 58 HOH HOH . 
Q 6 HOH F 1 92 92 HOH HOH . 
R 6 HOH G 1 12 12 HOH HOH . 
R 6 HOH G 2 45 45 HOH HOH . 
S 6 HOH H 1 59 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F15 . . . I 4 37.6 30.662 59.747 1 57.82 ? C1 F15 1002 A 1 
HETATM 2 O O2 F15 . . . I 4 37.245 29.549 59.349 1 56.16 ? O2 F15 1002 A 1 
HETATM 3 O O3 F15 . . . I 4 38.397 30.71 60.687 1 59.77 ? O3 F15 1002 A 1 
HETATM 4 C C4 F15 . . . I 4 37.057 32.016 59.068 1 56.47 ? C4 F15 1002 A 1 
HETATM 5 C C5 F15 . . . I 4 37.263 33.392 59.901 1 53.83 ? C5 F15 1002 A 1 
HETATM 6 C C6 F15 . . . I 4 37.228 35.986 59.842 1 50.73 ? C6 F15 1002 A 1 
HETATM 7 C C7 F15 . . . I 4 36.26 37.088 60.33 1 51.88 ? C7 F15 1002 A 1 
HETATM 8 C C8 F15 . . . I 4 36.533 34.697 59.453 1 51.13 ? C8 F15 1002 A 1 
HETATM 9 C C9 F15 . . . I 4 36.388 38.274 59.363 1 51.37 ? C9 F15 1002 A 1 
HETATM 10 C C10 F15 . . . I 4 37.469 39.295 59.779 1 51.78 ? C10 F15 1002 A 1 
HETATM 11 C C11 F15 . . . I 4 38.771 39.284 58.948 1 51.95 ? C11 F15 1002 A 1 
HETATM 12 C C12 F15 . . . I 4 39.092 40.444 57.898 1 51.34 ? C12 F15 1002 A 1 
HETATM 13 C C13 F15 . . . I 4 40.348 40.212 56.928 1 48.79 ? C13 F15 1002 A 1 
HETATM 14 C C2 F15 . . . I 4 41.738 40.644 57.502 1 47.9 ? C2 F15 1002 A 1 
HETATM 15 C C3 F15 . . . I 4 42.173 40.121 58.945 1 47.45 ? C3 F15 1002 A 1 
HETATM 16 C C14 F15 . . . I 4 43.355 39.106 59.087 1 44.84 ? C14 F15 1002 A 1 
HETATM 17 C C15 F15 . . . I 4 43.248 38.219 60.347 1 43.42 ? C15 F15 1002 A 1 
HETATM 18 H H22 F15 . . . I 4 35.998 31.873 58.851 1 67.89 ? H22 F15 1002 A 1 
HETATM 19 H H23 F15 . . . I 4 37.518 32.1 58.08 1 67.91 ? H23 F15 1002 A 1 
HETATM 20 H H24 F15 . . . I 4 38.322 33.635 59.89 1 67.88 ? H24 F15 1002 A 1 
HETATM 21 H H25 F15 . . . I 4 36.985 33.225 60.942 1 67.61 ? H25 F15 1002 A 1 
HETATM 22 H H26 F15 . . . I 4 37.99 35.822 60.578 1 67.36 ? H26 F15 1002 A 1 
HETATM 23 H H1 F15 . . . I 4 37.764 36.332 58.958 1 67.5 ? H1 F15 1002 A 1 
HETATM 24 H H27 F15 . . . I 4 36.468 37.386 61.36 1 67.33 ? H27 F15 1002 A 1 
HETATM 25 H H2 F15 . . . I 4 35.231 36.726 60.331 1 67.38 ? H2 F15 1002 A 1 
HETATM 26 H H28 F15 . . . I 4 35.505 34.704 59.824 1 67.63 ? H28 F15 1002 A 1 
HETATM 27 H H29 F15 . . . I 4 36.48 34.722 58.371 1 67.73 ? H29 F15 1002 A 1 
HETATM 28 H H30 F15 . . . I 4 35.43 38.795 59.374 1 67.07 ? H30 F15 1002 A 1 
HETATM 29 H H31 F15 . . . I 4 36.552 37.945 58.332 1 67.21 ? H31 F15 1002 A 1 
HETATM 30 H H33 F15 . . . I 4 37.053 40.304 59.756 1 67.18 ? H33 F15 1002 A 1 
HETATM 31 H H5 F15 . . . I 4 37.723 39.108 60.824 1 67.31 ? H5 F15 1002 A 1 
HETATM 32 H H34 F15 . . . I 4 38.855 38.305 58.47 1 67.34 ? H34 F15 1002 A 1 
HETATM 33 H H6 F15 . . . I 4 39.527 39.324 59.725 1 67.22 ? H6 F15 1002 A 1 
HETATM 34 H H36 F15 . . . I 4 39.172 41.414 58.401 1 67.25 ? H36 F15 1002 A 1 
HETATM 35 H H37 F15 . . . I 4 38.223 40.516 57.24 1 67.16 ? H37 F15 1002 A 1 
HETATM 36 H H3 F15 . . . I 4 40.202 40.767 55.997 1 66.47 ? H3 F15 1002 A 1 
HETATM 37 H H4 F15 . . . I 4 40.395 39.173 56.599 1 66.44 ? H4 F15 1002 A 1 
HETATM 38 H H7 F15 . . . I 4 41.724 41.733 57.543 1 65.41 ? H7 F15 1002 A 1 
HETATM 39 H H8 F15 . . . I 4 42.509 40.403 56.77 1 65.03 ? H8 F15 1002 A 1 
HETATM 40 H H9 F15 . . . I 4 41.345 39.621 59.418 1 63.45 ? H9 F15 1002 A 1 
HETATM 41 H H10 F15 . . . I 4 42.355 40.973 59.599 1 63.12 ? H10 F15 1002 A 1 
HETATM 42 H H11 F15 . . . I 4 44.298 39.655 59.116 1 61.87 ? H11 F15 1002 A 1 
HETATM 43 H H12 F15 . . . I 4 43.393 38.446 58.22 1 61.63 ? H12 F15 1002 A 1 
HETATM 44 H H13 F15 . . . I 4 44.119 37.569 60.446 1 60.99 ? H13 F15 1002 A 1 
HETATM 45 H H14 F15 . . . I 4 42.364 37.579 60.302 1 60.85 ? H14 F15 1002 A 1 
HETATM 46 H H15 F15 . . . I 4 43.192 38.829 61.25 1 60.97 ? H15 F15 1002 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           491 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#