data_1XVS # _model_server_result.job_id qjD5cHUPUA8dZe-9mZbvtw _model_server_result.datetime_utc '2025-04-05 10:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1XVS # _exptl.entry_id 1XVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 131.43 _cell.angle_gamma 90 _cell.entry_id 1XVS _cell.length_a 90.138 _cell.length_b 67.998 _cell.length_c 64.002 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LEU 46 A LEU 46 1_555 A N MSE 47 A MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C MSE 47 A MSE 47 1_555 A N SER 48 A SER 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C VAL 95 A VAL 95 1_555 A N MSE 96 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 A C MSE 96 A MSE 96 1_555 A N GLN 97 A GLN 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale6 A C LEU 101 A LEU 101 1_555 A N MSE 102 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C MSE 102 A MSE 102 1_555 A N ILE 103 A ILE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale8 B C MSE 1 B MSE 1 1_555 B N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C LEU 46 B LEU 46 1_555 B N MSE 47 B MSE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale10 B C MSE 47 B MSE 47 1_555 B N SER 48 B SER 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale11 B C VAL 95 B VAL 95 1_555 B N MSE 96 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale12 B C MSE 96 B MSE 96 1_555 B N GLN 97 B GLN 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C LEU 101 B LEU 101 1_555 B N MSE 102 B MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale14 B C MSE 102 B MSE 102 1_555 B N ILE 103 B ILE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1XVS _atom_sites.fract_transf_matrix[1][1] 0.011094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 3 HOH A 1 302 1 HOH HOH . D 3 HOH A 2 303 4 HOH HOH . D 3 HOH A 3 304 8 HOH HOH . D 3 HOH A 4 305 15 HOH HOH . D 3 HOH A 5 306 17 HOH HOH . D 3 HOH A 6 307 21 HOH HOH . D 3 HOH A 7 308 23 HOH HOH . D 3 HOH A 8 309 24 HOH HOH . D 3 HOH A 9 310 27 HOH HOH . D 3 HOH A 10 311 34 HOH HOH . D 3 HOH A 11 312 38 HOH HOH . D 3 HOH A 12 313 39 HOH HOH . D 3 HOH A 13 314 41 HOH HOH . D 3 HOH A 14 315 43 HOH HOH . D 3 HOH A 15 316 47 HOH HOH . D 3 HOH A 16 317 51 HOH HOH . D 3 HOH A 17 318 52 HOH HOH . D 3 HOH A 18 319 54 HOH HOH . D 3 HOH A 19 320 57 HOH HOH . D 3 HOH A 20 321 58 HOH HOH . D 3 HOH A 21 322 61 HOH HOH . D 3 HOH A 22 323 62 HOH HOH . D 3 HOH A 23 324 65 HOH HOH . D 3 HOH A 24 325 66 HOH HOH . D 3 HOH A 25 326 67 HOH HOH . D 3 HOH A 26 327 69 HOH HOH . D 3 HOH A 27 328 72 HOH HOH . D 3 HOH A 28 329 76 HOH HOH . D 3 HOH A 29 330 77 HOH HOH . D 3 HOH A 30 331 78 HOH HOH . D 3 HOH A 31 332 80 HOH HOH . D 3 HOH A 32 333 81 HOH HOH . D 3 HOH A 33 334 82 HOH HOH . D 3 HOH A 34 335 85 HOH HOH . D 3 HOH A 35 336 86 HOH HOH . D 3 HOH A 36 337 87 HOH HOH . D 3 HOH A 37 338 88 HOH HOH . D 3 HOH A 38 339 90 HOH HOH . D 3 HOH A 39 340 91 HOH HOH . D 3 HOH A 40 341 93 HOH HOH . D 3 HOH A 41 342 95 HOH HOH . D 3 HOH A 42 343 98 HOH HOH . D 3 HOH A 43 344 102 HOH HOH . D 3 HOH A 44 345 103 HOH HOH . D 3 HOH A 45 346 104 HOH HOH . D 3 HOH A 46 347 105 HOH HOH . D 3 HOH A 47 348 106 HOH HOH . D 3 HOH A 48 349 109 HOH HOH . D 3 HOH A 49 350 113 HOH HOH . D 3 HOH A 50 351 114 HOH HOH . D 3 HOH A 51 352 115 HOH HOH . D 3 HOH A 52 353 116 HOH HOH . D 3 HOH A 53 354 118 HOH HOH . D 3 HOH A 54 355 120 HOH HOH . D 3 HOH A 55 356 122 HOH HOH . D 3 HOH A 56 357 124 HOH HOH . D 3 HOH A 57 358 127 HOH HOH . D 3 HOH A 58 359 131 HOH HOH . D 3 HOH A 59 360 132 HOH HOH . D 3 HOH A 60 361 134 HOH HOH . D 3 HOH A 61 362 137 HOH HOH . D 3 HOH A 62 363 141 HOH HOH . D 3 HOH A 63 364 144 HOH HOH . D 3 HOH A 64 365 145 HOH HOH . D 3 HOH A 65 366 146 HOH HOH . D 3 HOH A 66 367 147 HOH HOH . D 3 HOH A 67 368 148 HOH HOH . D 3 HOH A 68 369 149 HOH HOH . D 3 HOH A 69 370 150 HOH HOH . D 3 HOH A 70 371 152 HOH HOH . D 3 HOH A 71 372 153 HOH HOH . D 3 HOH A 72 373 154 HOH HOH . D 3 HOH A 73 374 156 HOH HOH . D 3 HOH A 74 375 157 HOH HOH . D 3 HOH A 75 376 159 HOH HOH . D 3 HOH A 76 377 161 HOH HOH . D 3 HOH A 77 378 163 HOH HOH . D 3 HOH A 78 379 164 HOH HOH . D 3 HOH A 79 380 165 HOH HOH . D 3 HOH A 80 381 168 HOH HOH . D 3 HOH A 81 382 170 HOH HOH . D 3 HOH A 82 383 172 HOH HOH . D 3 HOH A 83 384 178 HOH HOH . D 3 HOH A 84 385 181 HOH HOH . D 3 HOH A 85 386 182 HOH HOH . D 3 HOH A 86 387 183 HOH HOH . D 3 HOH A 87 388 185 HOH HOH . D 3 HOH A 88 389 186 HOH HOH . D 3 HOH A 89 390 187 HOH HOH . D 3 HOH A 90 391 188 HOH HOH . D 3 HOH A 91 392 189 HOH HOH . D 3 HOH A 92 393 190 HOH HOH . D 3 HOH A 93 394 191 HOH HOH . D 3 HOH A 94 395 192 HOH HOH . D 3 HOH A 95 396 194 HOH HOH . D 3 HOH A 96 397 195 HOH HOH . D 3 HOH A 97 398 197 HOH HOH . D 3 HOH A 98 399 202 HOH HOH . D 3 HOH A 99 400 203 HOH HOH . D 3 HOH A 100 401 204 HOH HOH . D 3 HOH A 101 402 205 HOH HOH . D 3 HOH A 102 403 206 HOH HOH . D 3 HOH A 103 404 207 HOH HOH . D 3 HOH A 104 405 209 HOH HOH . D 3 HOH A 105 406 212 HOH HOH . D 3 HOH A 106 407 213 HOH HOH . D 3 HOH A 107 408 214 HOH HOH . D 3 HOH A 108 409 215 HOH HOH . D 3 HOH A 109 410 221 HOH HOH . D 3 HOH A 110 411 222 HOH HOH . D 3 HOH A 111 412 223 HOH HOH . D 3 HOH A 112 413 226 HOH HOH . D 3 HOH A 113 414 227 HOH HOH . D 3 HOH A 114 415 228 HOH HOH . D 3 HOH A 115 416 229 HOH HOH . D 3 HOH A 116 417 230 HOH HOH . D 3 HOH A 117 418 232 HOH HOH . D 3 HOH A 118 419 237 HOH HOH . D 3 HOH A 119 420 238 HOH HOH . D 3 HOH A 120 421 240 HOH HOH . D 3 HOH A 121 422 242 HOH HOH . D 3 HOH A 122 423 245 HOH HOH . D 3 HOH A 123 424 246 HOH HOH . D 3 HOH A 124 425 249 HOH HOH . E 3 HOH B 1 127 2 HOH HOH . E 3 HOH B 2 128 3 HOH HOH . E 3 HOH B 3 129 5 HOH HOH . E 3 HOH B 4 130 6 HOH HOH . E 3 HOH B 5 131 7 HOH HOH . E 3 HOH B 6 132 9 HOH HOH . E 3 HOH B 7 133 10 HOH HOH . E 3 HOH B 8 134 11 HOH HOH . E 3 HOH B 9 135 12 HOH HOH . E 3 HOH B 10 136 13 HOH HOH . E 3 HOH B 11 137 14 HOH HOH . E 3 HOH B 12 138 16 HOH HOH . E 3 HOH B 13 139 18 HOH HOH . E 3 HOH B 14 140 19 HOH HOH . E 3 HOH B 15 141 20 HOH HOH . E 3 HOH B 16 142 22 HOH HOH . E 3 HOH B 17 143 25 HOH HOH . E 3 HOH B 18 144 26 HOH HOH . E 3 HOH B 19 145 28 HOH HOH . E 3 HOH B 20 146 29 HOH HOH . E 3 HOH B 21 147 30 HOH HOH . E 3 HOH B 22 148 31 HOH HOH . E 3 HOH B 23 149 32 HOH HOH . E 3 HOH B 24 150 33 HOH HOH . E 3 HOH B 25 151 35 HOH HOH . E 3 HOH B 26 152 36 HOH HOH . E 3 HOH B 27 153 37 HOH HOH . E 3 HOH B 28 154 40 HOH HOH . E 3 HOH B 29 155 42 HOH HOH . E 3 HOH B 30 156 44 HOH HOH . E 3 HOH B 31 157 45 HOH HOH . E 3 HOH B 32 158 46 HOH HOH . E 3 HOH B 33 159 48 HOH HOH . E 3 HOH B 34 160 49 HOH HOH . E 3 HOH B 35 161 50 HOH HOH . E 3 HOH B 36 162 53 HOH HOH . E 3 HOH B 37 163 55 HOH HOH . E 3 HOH B 38 164 56 HOH HOH . E 3 HOH B 39 165 59 HOH HOH . E 3 HOH B 40 166 60 HOH HOH . E 3 HOH B 41 167 63 HOH HOH . E 3 HOH B 42 168 64 HOH HOH . E 3 HOH B 43 169 68 HOH HOH . E 3 HOH B 44 170 70 HOH HOH . E 3 HOH B 45 171 71 HOH HOH . E 3 HOH B 46 172 73 HOH HOH . E 3 HOH B 47 173 74 HOH HOH . E 3 HOH B 48 174 75 HOH HOH . E 3 HOH B 49 175 79 HOH HOH . E 3 HOH B 50 176 83 HOH HOH . E 3 HOH B 51 177 84 HOH HOH . E 3 HOH B 52 178 89 HOH HOH . E 3 HOH B 53 179 92 HOH HOH . E 3 HOH B 54 180 94 HOH HOH . E 3 HOH B 55 181 96 HOH HOH . E 3 HOH B 56 182 97 HOH HOH . E 3 HOH B 57 183 99 HOH HOH . E 3 HOH B 58 184 100 HOH HOH . E 3 HOH B 59 185 101 HOH HOH . E 3 HOH B 60 186 107 HOH HOH . E 3 HOH B 61 187 108 HOH HOH . E 3 HOH B 62 188 110 HOH HOH . E 3 HOH B 63 189 111 HOH HOH . E 3 HOH B 64 190 112 HOH HOH . E 3 HOH B 65 191 117 HOH HOH . E 3 HOH B 66 192 119 HOH HOH . E 3 HOH B 67 193 121 HOH HOH . E 3 HOH B 68 194 123 HOH HOH . E 3 HOH B 69 195 125 HOH HOH . E 3 HOH B 70 196 126 HOH HOH . E 3 HOH B 71 197 129 HOH HOH . E 3 HOH B 72 198 130 HOH HOH . E 3 HOH B 73 199 133 HOH HOH . E 3 HOH B 74 200 135 HOH HOH . E 3 HOH B 75 201 136 HOH HOH . E 3 HOH B 76 202 138 HOH HOH . E 3 HOH B 77 203 139 HOH HOH . E 3 HOH B 78 204 140 HOH HOH . E 3 HOH B 79 205 142 HOH HOH . E 3 HOH B 80 206 143 HOH HOH . E 3 HOH B 81 207 151 HOH HOH . E 3 HOH B 82 208 155 HOH HOH . E 3 HOH B 83 209 158 HOH HOH . E 3 HOH B 84 210 160 HOH HOH . E 3 HOH B 85 211 162 HOH HOH . E 3 HOH B 86 212 166 HOH HOH . E 3 HOH B 87 213 167 HOH HOH . E 3 HOH B 88 214 169 HOH HOH . E 3 HOH B 89 215 171 HOH HOH . E 3 HOH B 90 216 173 HOH HOH . E 3 HOH B 91 217 174 HOH HOH . E 3 HOH B 92 218 175 HOH HOH . E 3 HOH B 93 219 176 HOH HOH . E 3 HOH B 94 220 177 HOH HOH . E 3 HOH B 95 221 179 HOH HOH . E 3 HOH B 96 222 180 HOH HOH . E 3 HOH B 97 223 184 HOH HOH . E 3 HOH B 98 224 193 HOH HOH . E 3 HOH B 99 225 196 HOH HOH . E 3 HOH B 100 226 198 HOH HOH . E 3 HOH B 101 227 199 HOH HOH . E 3 HOH B 102 228 200 HOH HOH . E 3 HOH B 103 229 201 HOH HOH . E 3 HOH B 104 230 208 HOH HOH . E 3 HOH B 105 231 210 HOH HOH . E 3 HOH B 106 232 211 HOH HOH . E 3 HOH B 107 233 216 HOH HOH . E 3 HOH B 108 234 217 HOH HOH . E 3 HOH B 109 235 218 HOH HOH . E 3 HOH B 110 236 219 HOH HOH . E 3 HOH B 111 237 220 HOH HOH . E 3 HOH B 112 238 224 HOH HOH . E 3 HOH B 113 239 225 HOH HOH . E 3 HOH B 114 240 231 HOH HOH . E 3 HOH B 115 241 233 HOH HOH . E 3 HOH B 116 242 234 HOH HOH . E 3 HOH B 117 243 235 HOH HOH . E 3 HOH B 118 244 236 HOH HOH . E 3 HOH B 119 245 239 HOH HOH . E 3 HOH B 120 246 241 HOH HOH . E 3 HOH B 121 247 243 HOH HOH . E 3 HOH B 122 248 244 HOH HOH . E 3 HOH B 123 249 247 HOH HOH . E 3 HOH B 124 250 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 30.164 0.787 -14.562 1 54.08 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 29.078 0.755 -13.67 1 49.04 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 30.874 2.151 -14.785 1 53.1 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 32.267 2.28 -14.331 1 56.65 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 30.458 3.157 -15.88 1 50.81 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 29.607 2.588 -16.875 1 56.63 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 6 #