data_1XVU # _model_server_result.job_id KdEQi64mFZPdQalZCZtbzg _model_server_result.datetime_utc '2024-11-08 13:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1XVU # _exptl.entry_id 1XVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XVU _cell.length_a 86.838 _cell.length_b 86.838 _cell.length_c 164.057 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1XVU _atom_sites.fract_transf_matrix[1][1] 0.011516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 501 501 COA COA . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 2 HOH HOH . C 3 HOH A 3 504 3 HOH HOH . C 3 HOH A 4 505 4 HOH HOH . C 3 HOH A 5 506 5 HOH HOH . C 3 HOH A 6 507 6 HOH HOH . C 3 HOH A 7 508 7 HOH HOH . C 3 HOH A 8 509 8 HOH HOH . C 3 HOH A 9 510 9 HOH HOH . C 3 HOH A 10 511 10 HOH HOH . C 3 HOH A 11 512 11 HOH HOH . C 3 HOH A 12 513 12 HOH HOH . C 3 HOH A 13 514 13 HOH HOH . C 3 HOH A 14 515 14 HOH HOH . C 3 HOH A 15 516 15 HOH HOH . C 3 HOH A 16 517 16 HOH HOH . C 3 HOH A 17 518 17 HOH HOH . C 3 HOH A 18 519 18 HOH HOH . C 3 HOH A 19 520 19 HOH HOH . C 3 HOH A 20 521 20 HOH HOH . C 3 HOH A 21 522 21 HOH HOH . C 3 HOH A 22 523 22 HOH HOH . C 3 HOH A 23 524 23 HOH HOH . C 3 HOH A 24 525 24 HOH HOH . C 3 HOH A 25 526 25 HOH HOH . C 3 HOH A 26 527 26 HOH HOH . C 3 HOH A 27 528 27 HOH HOH . C 3 HOH A 28 529 28 HOH HOH . C 3 HOH A 29 530 29 HOH HOH . C 3 HOH A 30 531 30 HOH HOH . C 3 HOH A 31 532 31 HOH HOH . C 3 HOH A 32 533 32 HOH HOH . C 3 HOH A 33 534 33 HOH HOH . C 3 HOH A 34 535 34 HOH HOH . C 3 HOH A 35 536 35 HOH HOH . C 3 HOH A 36 537 36 HOH HOH . C 3 HOH A 37 538 37 HOH HOH . C 3 HOH A 38 539 38 HOH HOH . C 3 HOH A 39 540 39 HOH HOH . C 3 HOH A 40 541 40 HOH HOH . C 3 HOH A 41 542 41 HOH HOH . C 3 HOH A 42 543 42 HOH HOH . C 3 HOH A 43 544 43 HOH HOH . C 3 HOH A 44 545 44 HOH HOH . C 3 HOH A 45 546 45 HOH HOH . C 3 HOH A 46 547 46 HOH HOH . C 3 HOH A 47 548 47 HOH HOH . C 3 HOH A 48 549 48 HOH HOH . C 3 HOH A 49 550 49 HOH HOH . C 3 HOH A 50 551 50 HOH HOH . C 3 HOH A 51 552 51 HOH HOH . C 3 HOH A 52 553 52 HOH HOH . C 3 HOH A 53 554 53 HOH HOH . C 3 HOH A 54 555 54 HOH HOH . C 3 HOH A 55 556 55 HOH HOH . C 3 HOH A 56 557 56 HOH HOH . C 3 HOH A 57 558 57 HOH HOH . C 3 HOH A 58 559 58 HOH HOH . C 3 HOH A 59 560 59 HOH HOH . C 3 HOH A 60 561 60 HOH HOH . C 3 HOH A 61 562 61 HOH HOH . C 3 HOH A 62 563 62 HOH HOH . C 3 HOH A 63 564 63 HOH HOH . C 3 HOH A 64 565 64 HOH HOH . C 3 HOH A 65 566 65 HOH HOH . C 3 HOH A 66 567 66 HOH HOH . C 3 HOH A 67 568 67 HOH HOH . C 3 HOH A 68 569 68 HOH HOH . C 3 HOH A 69 570 69 HOH HOH . C 3 HOH A 70 571 70 HOH HOH . C 3 HOH A 71 572 71 HOH HOH . C 3 HOH A 72 573 72 HOH HOH . C 3 HOH A 73 574 73 HOH HOH . C 3 HOH A 74 575 74 HOH HOH . C 3 HOH A 75 576 75 HOH HOH . C 3 HOH A 76 577 76 HOH HOH . C 3 HOH A 77 578 77 HOH HOH . C 3 HOH A 78 579 78 HOH HOH . C 3 HOH A 79 580 79 HOH HOH . C 3 HOH A 80 581 80 HOH HOH . C 3 HOH A 81 582 81 HOH HOH . C 3 HOH A 82 583 82 HOH HOH . C 3 HOH A 83 584 83 HOH HOH . C 3 HOH A 84 585 84 HOH HOH . C 3 HOH A 85 586 85 HOH HOH . C 3 HOH A 86 587 86 HOH HOH . C 3 HOH A 87 588 87 HOH HOH . C 3 HOH A 88 589 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 43.699 46.696 26.909 1 74.43 ? N1A COA 501 A 1 HETATM 2 C C2A COA . . . B 2 44.67 46.519 27.876 1 74.08 ? C2A COA 501 A 1 HETATM 3 N N3A COA . . . B 2 45.968 46.91 27.638 1 73.14 ? N3A COA 501 A 1 HETATM 4 C C4A COA . . . B 2 46.29 47.463 26.443 1 73.73 ? C4A COA 501 A 1 HETATM 5 C C5A COA . . . B 2 45.321 47.647 25.453 1 74.1 ? C5A COA 501 A 1 HETATM 6 C C6A COA . . . B 2 44.004 47.272 25.685 1 74.69 ? C6A COA 501 A 1 HETATM 7 N N6A COA . . . B 2 43.033 47.905 25.022 1 74 ? N6A COA 501 A 1 HETATM 8 N N7A COA . . . B 2 45.92 48.212 24.389 1 74.12 ? N7A COA 501 A 1 HETATM 9 C C8A COA . . . B 2 47.229 48.394 24.686 1 73.77 ? C8A COA 501 A 1 HETATM 10 N N9A COA . . . B 2 47.483 47.928 25.955 1 72.77 ? N9A COA 501 A 1 HETATM 11 C C1B COA . . . B 2 48.781 47.455 26.453 1 70.88 ? C1B COA 501 A 1 HETATM 12 C C2B COA . . . B 2 49.688 46.986 25.331 1 71 ? C2B COA 501 A 1 HETATM 13 O O2B COA . . . B 2 49.55 45.6 25.119 1 71.86 ? O2B COA 501 A 1 HETATM 14 C C3B COA . . . B 2 51.067 47.309 25.841 1 70.46 ? C3B COA 501 A 1 HETATM 15 O O3B COA . . . B 2 51.498 46.079 26.384 1 72.33 ? O3B COA 501 A 1 HETATM 16 P P3B COA . . . B 2 52.988 45.706 26.883 1 74.24 ? P3B COA 501 A 1 HETATM 17 O O7A COA . . . B 2 52.834 44.337 27.503 1 74.66 ? O7A COA 501 A 1 HETATM 18 O O8A COA . . . B 2 53.995 45.568 25.765 1 73.67 ? O8A COA 501 A 1 HETATM 19 O O9A COA . . . B 2 53.484 46.739 27.881 1 74.06 ? O9A COA 501 A 1 HETATM 20 C C4B COA . . . B 2 50.845 48.402 26.88 1 68.47 ? C4B COA 501 A 1 HETATM 21 O O4B COA . . . B 2 49.46 48.507 27.098 1 69.26 ? O4B COA 501 A 1 HETATM 22 C C5B COA . . . B 2 51.3 49.779 26.417 1 67.32 ? C5B COA 501 A 1 HETATM 23 O O5B COA . . . B 2 50.365 50.361 25.504 1 66.93 ? O5B COA 501 A 1 HETATM 24 P P1A COA . . . B 2 50.889 51.049 24.123 1 64.94 ? P1A COA 501 A 1 HETATM 25 O O1A COA . . . B 2 50.281 50.392 22.892 1 63.54 ? O1A COA 501 A 1 HETATM 26 O O2A COA . . . B 2 50.681 52.537 24.103 1 65.12 ? O2A COA 501 A 1 HETATM 27 O O3A COA . . . B 2 52.439 50.686 24.371 1 60.94 ? O3A COA 501 A 1 HETATM 28 P P2A COA . . . B 2 53.703 51.125 23.515 1 57.47 ? P2A COA 501 A 1 HETATM 29 O O4A COA . . . B 2 54.002 52.604 23.623 1 57.32 ? O4A COA 501 A 1 HETATM 30 O O5A COA . . . B 2 54.896 50.353 24.012 1 58.38 ? O5A COA 501 A 1 HETATM 31 O O6A COA . . . B 2 53.278 50.644 22.031 1 55.14 ? O6A COA 501 A 1 HETATM 32 C CBP COA . . . B 2 53.86 51.094 19.721 1 42.82 ? CBP COA 501 A 1 HETATM 33 C CCP COA . . . B 2 53.119 51.557 20.964 1 47.69 ? CCP COA 501 A 1 HETATM 34 C CDP COA . . . B 2 53.286 51.903 18.556 1 42.37 ? CDP COA 501 A 1 HETATM 35 C CEP COA . . . B 2 55.325 51.485 19.935 1 40.98 ? CEP COA 501 A 1 HETATM 36 C CAP COA . . . B 2 53.618 49.581 19.518 1 39.92 ? CAP COA 501 A 1 HETATM 37 O OAP COA . . . B 2 52.236 49.285 19.511 1 39.79 ? OAP COA 501 A 1 HETATM 38 C C9P COA . . . B 2 54.169 49.004 18.257 1 37.68 ? C9P COA 501 A 1 HETATM 39 O O9P COA . . . B 2 55.545 48.915 18.078 1 38.83 ? O9P COA 501 A 1 HETATM 40 N N8P COA . . . B 2 53.295 48.603 17.343 1 38.22 ? N8P COA 501 A 1 HETATM 41 C C7P COA . . . B 2 53.675 48.022 16.059 1 39.71 ? C7P COA 501 A 1 HETATM 42 C C6P COA . . . B 2 54.077 49.043 14.994 1 38.89 ? C6P COA 501 A 1 HETATM 43 C C5P COA . . . B 2 53.051 50.153 14.901 1 39.68 ? C5P COA 501 A 1 HETATM 44 O O5P COA . . . B 2 51.866 49.852 14.676 1 40.18 ? O5P COA 501 A 1 HETATM 45 N N4P COA . . . B 2 53.487 51.412 15.052 1 39.7 ? N4P COA 501 A 1 HETATM 46 C C3P COA . . . B 2 52.621 52.589 15.192 1 42.82 ? C3P COA 501 A 1 HETATM 47 C C2P COA . . . B 2 51.993 53.094 13.882 1 45.95 ? C2P COA 501 A 1 HETATM 48 S S1P COA . . . B 2 53.115 54.053 12.855 1 42.91 ? S1P COA 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #