data_1XVV # _model_server_result.job_id Q3a8HZidnyWv-Wo4tTdDkg _model_server_result.datetime_utc '2024-11-08 12:51:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1XVV # _exptl.entry_id 1XVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 910.718 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L-CARNITINYL-COA INNER SALT' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XVV _cell.length_a 86.627 _cell.length_b 86.627 _cell.length_c 163.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H49 N8 O18 P3 S' _chem_comp.formula_weight 910.718 _chem_comp.id CCQ _chem_comp.mon_nstd_flag . _chem_comp.name 'L-CARNITINYL-COA INNER SALT' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "O5'-(4-(3-{2-[2-((R)-3-HYDROXY-4-(TRIMETHYLAMMONIO)-1-OXO-BUTYL)SULFANYL-ETHYLCARBAMOYL]-ETHYLCARBAMOYL}-(R)-3-HYDROXY-2,2-DIMETHYL-PROPYL)-1-HYDROXY-3-OXIDO-1,3-DIOXO-2,4-DIOXA-1,3-DIPHOSPHABUT-1-YL) 3'-PHOSPHO-ADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 CCQ doub 70 n n C1 C2 CCQ sing 71 n n C1 S1P CCQ sing 72 n n C2 C3 CCQ sing 73 n n C2 H21 CCQ sing 74 n n C2 H22 CCQ sing 75 n n C3 C4 CCQ sing 76 n n C3 O3 CCQ sing 77 n n C3 H3 CCQ sing 78 n n C4 N5 CCQ sing 79 n n C4 H41 CCQ sing 80 n n C4 H42 CCQ sing 81 n n N5 C5C CCQ sing 82 n n N5 C5B CCQ sing 83 n n N5 C5A CCQ sing 84 n n C5C H5C1 CCQ sing 85 n n C5C H5C2 CCQ sing 86 n n C5C H5C3 CCQ sing 87 n n C5B H5B1 CCQ sing 88 n n C5B H5B2 CCQ sing 89 n n C5B H5B3 CCQ sing 90 n n C5A H5A1 CCQ sing 91 n n C5A H5A2 CCQ sing 92 n n C5A H5A3 CCQ sing 93 n n O3 HO3 CCQ sing 94 n n S1P C2P CCQ sing 95 n n C2P C3P CCQ sing 96 n n C2P H11 CCQ sing 97 n n C2P H12 CCQ sing 98 n n C3P N4P CCQ sing 99 n n C3P H31 CCQ sing 100 n n C3P H32 CCQ sing 101 n n N4P C5P CCQ sing 102 n n N4P HN4 CCQ sing 103 n n C5P O5P CCQ doub 104 n n C5P C6P CCQ sing 105 n n C6P C7P CCQ sing 106 n n C6P H61 CCQ sing 107 n n C6P H62 CCQ sing 108 n n C7P N8P CCQ sing 109 n n C7P H71 CCQ sing 110 n n C7P H72 CCQ sing 111 n n N8P C9P CCQ sing 112 n n N8P HN8 CCQ sing 113 n n C9P O9P CCQ doub 114 n n C9P CAP CCQ sing 115 n n CAP OAP CCQ sing 116 n n CAP CBP CCQ sing 117 n n CAP H10 CCQ sing 118 n n OAP H1 CCQ sing 119 n n CBP CDP CCQ sing 120 n n CBP CEP CCQ sing 121 n n CBP CCP CCQ sing 122 n n CDP H131 CCQ sing 123 n n CDP H132 CCQ sing 124 n n CDP H133 CCQ sing 125 n n CEP H141 CCQ sing 126 n n CEP H142 CCQ sing 127 n n CEP H143 CCQ sing 128 n n CCP O6A CCQ sing 129 n n CCP H121 CCQ sing 130 n n CCP H122 CCQ sing 131 n n O6A P2A CCQ sing 132 n n P2A O4A CCQ sing 133 n n P2A O5A CCQ doub 134 n n P2A O3A CCQ sing 135 n n O3A P1A CCQ sing 136 n n P1A O1A CCQ doub 137 n n P1A O2A CCQ sing 138 n n P1A O5D CCQ sing 139 n n O2A HO2 CCQ sing 140 n n O5D C5D CCQ sing 141 n n C5D C4D CCQ sing 142 n n C5D "H5'1" CCQ sing 143 n n C5D "H5'2" CCQ sing 144 n n C4D C3D CCQ sing 145 n n C4D O4D CCQ sing 146 n n C4D H4' CCQ sing 147 n n C3D O3D CCQ sing 148 n n C3D C2D CCQ sing 149 n n C3D H3' CCQ sing 150 n n O3D P3D CCQ sing 151 n n P3D O7A CCQ doub 152 n n P3D O8A CCQ sing 153 n n P3D O9A CCQ sing 154 n n O8A HO8 CCQ sing 155 n n O9A HO9 CCQ sing 156 n n C2D O2D CCQ sing 157 n n C2D C1D CCQ sing 158 n n C2D H2' CCQ sing 159 n n O2D H4 CCQ sing 160 n n C1D O4D CCQ sing 161 n n C1D N9A CCQ sing 162 n n C1D H1' CCQ sing 163 n n N9A C4A CCQ sing 164 n y N9A C8A CCQ sing 165 n y C4A C5X CCQ doub 166 n y C4A N3A CCQ sing 167 n y C5X N7A CCQ sing 168 n y C5X C6A CCQ sing 169 n y N7A C8A CCQ doub 170 n y C8A H8 CCQ sing 171 n n C6A N6A CCQ sing 172 n n C6A N1A CCQ doub 173 n y N6A HN61 CCQ sing 174 n n N6A HN62 CCQ sing 175 n n N1A C2A CCQ sing 176 n y C2A N3A CCQ doub 177 n y C2A H2 CCQ sing 178 n n # _atom_sites.entry_id 1XVV _atom_sites.fract_transf_matrix[1][1] 0.011544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CCQ A 1 501 501 CCQ CCQ . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 2 HOH HOH . C 3 HOH A 3 504 3 HOH HOH . C 3 HOH A 4 505 4 HOH HOH . C 3 HOH A 5 506 5 HOH HOH . C 3 HOH A 6 507 6 HOH HOH . C 3 HOH A 7 508 7 HOH HOH . C 3 HOH A 8 509 8 HOH HOH . C 3 HOH A 9 510 9 HOH HOH . C 3 HOH A 10 511 10 HOH HOH . C 3 HOH A 11 512 11 HOH HOH . C 3 HOH A 12 513 12 HOH HOH . C 3 HOH A 13 514 13 HOH HOH . C 3 HOH A 14 515 14 HOH HOH . C 3 HOH A 15 516 15 HOH HOH . C 3 HOH A 16 517 16 HOH HOH . C 3 HOH A 17 518 17 HOH HOH . C 3 HOH A 18 519 18 HOH HOH . C 3 HOH A 19 520 19 HOH HOH . C 3 HOH A 20 521 20 HOH HOH . C 3 HOH A 21 522 21 HOH HOH . C 3 HOH A 22 523 22 HOH HOH . C 3 HOH A 23 524 23 HOH HOH . C 3 HOH A 24 525 24 HOH HOH . C 3 HOH A 25 526 25 HOH HOH . C 3 HOH A 26 527 26 HOH HOH . C 3 HOH A 27 528 27 HOH HOH . C 3 HOH A 28 529 28 HOH HOH . C 3 HOH A 29 530 29 HOH HOH . C 3 HOH A 30 531 30 HOH HOH . C 3 HOH A 31 532 31 HOH HOH . C 3 HOH A 32 533 32 HOH HOH . C 3 HOH A 33 534 33 HOH HOH . C 3 HOH A 34 535 34 HOH HOH . C 3 HOH A 35 536 35 HOH HOH . C 3 HOH A 36 537 36 HOH HOH . C 3 HOH A 37 538 37 HOH HOH . C 3 HOH A 38 539 38 HOH HOH . C 3 HOH A 39 540 39 HOH HOH . C 3 HOH A 40 541 40 HOH HOH . C 3 HOH A 41 542 41 HOH HOH . C 3 HOH A 42 543 42 HOH HOH . C 3 HOH A 43 544 43 HOH HOH . C 3 HOH A 44 545 44 HOH HOH . C 3 HOH A 45 546 45 HOH HOH . C 3 HOH A 46 547 46 HOH HOH . C 3 HOH A 47 548 47 HOH HOH . C 3 HOH A 48 549 48 HOH HOH . C 3 HOH A 49 550 49 HOH HOH . C 3 HOH A 50 551 50 HOH HOH . C 3 HOH A 51 552 51 HOH HOH . C 3 HOH A 52 553 52 HOH HOH . C 3 HOH A 53 554 53 HOH HOH . C 3 HOH A 54 555 54 HOH HOH . C 3 HOH A 55 556 55 HOH HOH . C 3 HOH A 56 557 56 HOH HOH . C 3 HOH A 57 558 57 HOH HOH . C 3 HOH A 58 559 58 HOH HOH . C 3 HOH A 59 560 59 HOH HOH . C 3 HOH A 60 561 60 HOH HOH . C 3 HOH A 61 562 61 HOH HOH . C 3 HOH A 62 563 62 HOH HOH . C 3 HOH A 63 564 63 HOH HOH . C 3 HOH A 64 565 64 HOH HOH . C 3 HOH A 65 566 65 HOH HOH . C 3 HOH A 66 567 66 HOH HOH . C 3 HOH A 67 568 67 HOH HOH . C 3 HOH A 68 569 68 HOH HOH . C 3 HOH A 69 570 69 HOH HOH . C 3 HOH A 70 571 70 HOH HOH . C 3 HOH A 71 572 71 HOH HOH . C 3 HOH A 72 573 72 HOH HOH . C 3 HOH A 73 574 73 HOH HOH . C 3 HOH A 74 575 74 HOH HOH . C 3 HOH A 75 576 75 HOH HOH . C 3 HOH A 76 577 76 HOH HOH . C 3 HOH A 77 578 77 HOH HOH . C 3 HOH A 78 579 78 HOH HOH . C 3 HOH A 79 580 79 HOH HOH . C 3 HOH A 80 581 80 HOH HOH . C 3 HOH A 81 582 81 HOH HOH . C 3 HOH A 82 583 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 CCQ . . . B 2 54.296 55.286 12.366 1 64.93 ? O1 CCQ 501 A 1 HETATM 2 C C1 CCQ . . . B 2 53.123 55.455 12.661 1 65.22 ? C1 CCQ 501 A 1 HETATM 3 C C2 CCQ . . . B 2 52.649 56.896 12.892 1 66.22 ? C2 CCQ 501 A 1 HETATM 4 C C3 CCQ . . . B 2 53.689 57.817 13.594 1 68.37 ? C3 CCQ 501 A 1 HETATM 5 C C4 CCQ . . . B 2 53.303 59.318 13.608 1 68.3 ? C4 CCQ 501 A 1 HETATM 6 N N5 CCQ . . . B 2 53.816 60.155 14.747 1 69.58 ? N5 CCQ 501 A 1 HETATM 7 C C5C CCQ . . . B 2 53.97 59.359 15.981 1 69.64 ? C5C CCQ 501 A 1 HETATM 8 C C5B CCQ . . . B 2 52.867 61.236 15.05 1 68.41 ? C5B CCQ 501 A 1 HETATM 9 C C5A CCQ . . . B 2 55.084 60.844 14.43 1 68.01 ? C5A CCQ 501 A 1 HETATM 10 O O3 CCQ . . . B 2 54.99 57.672 12.992 1 67.9 ? O3 CCQ 501 A 1 HETATM 11 S S1P CCQ . . . B 2 52.125 54.079 12.776 1 63.62 ? S1P CCQ 501 A 1 HETATM 12 C C2P CCQ . . . B 2 53.093 52.706 13.261 1 59.71 ? C2P CCQ 501 A 1 HETATM 13 C C3P CCQ . . . B 2 52.569 52.316 14.644 1 57.54 ? C3P CCQ 501 A 1 HETATM 14 N N4P CCQ . . . B 2 53.192 51.102 15.133 1 53.59 ? N4P CCQ 501 A 1 HETATM 15 C C5P CCQ . . . B 2 52.755 49.883 14.814 1 54.1 ? C5P CCQ 501 A 1 HETATM 16 O O5P CCQ . . . B 2 51.591 49.648 14.505 1 51.92 ? O5P CCQ 501 A 1 HETATM 17 C C6P CCQ . . . B 2 53.799 48.773 14.851 1 53.19 ? C6P CCQ 501 A 1 HETATM 18 C C7P CCQ . . . B 2 53.496 47.728 15.924 1 53.72 ? C7P CCQ 501 A 1 HETATM 19 N N8P CCQ . . . B 2 53.102 48.294 17.207 1 53.14 ? N8P CCQ 501 A 1 HETATM 20 C C9P CCQ . . . B 2 53.958 48.716 18.153 1 55.1 ? C9P CCQ 501 A 1 HETATM 21 O O9P CCQ . . . B 2 55.177 48.776 18.018 1 51.86 ? O9P CCQ 501 A 1 HETATM 22 C CAP CCQ . . . B 2 53.314 49.116 19.454 1 57.97 ? CAP CCQ 501 A 1 HETATM 23 O OAP CCQ . . . B 2 51.929 48.763 19.408 1 57.62 ? OAP CCQ 501 A 1 HETATM 24 C CBP CCQ . . . B 2 53.371 50.602 19.787 1 61.75 ? CBP CCQ 501 A 1 HETATM 25 C CDP CCQ . . . B 2 52.023 50.946 20.387 1 62.68 ? CDP CCQ 501 A 1 HETATM 26 C CEP CCQ . . . B 2 53.539 51.521 18.58 1 61.21 ? CEP CCQ 501 A 1 HETATM 27 C CCP CCQ . . . B 2 54.447 50.837 20.854 1 65.03 ? CCP CCQ 501 A 1 HETATM 28 O O6A CCQ . . . B 2 53.889 51.542 21.989 1 70.93 ? O6A CCQ 501 A 1 HETATM 29 P P2A CCQ . . . B 2 53.62 51.038 23.524 1 72.42 ? P2A CCQ 501 A 1 HETATM 30 O O4A CCQ . . . B 2 53.329 52.313 24.283 1 73.55 ? O4A CCQ 501 A 1 HETATM 31 O O5A CCQ . . . B 2 54.75 50.165 24.026 1 72.71 ? O5A CCQ 501 A 1 HETATM 32 O O3A CCQ . . . B 2 52.286 50.119 23.524 1 73.15 ? O3A CCQ 501 A 1 HETATM 33 P P1A CCQ . . . B 2 50.758 50.629 23.774 1 73.93 ? P1A CCQ 501 A 1 HETATM 34 O O1A CCQ . . . B 2 49.873 49.928 22.752 1 72.73 ? O1A CCQ 501 A 1 HETATM 35 O O2A CCQ . . . B 2 50.713 52.132 23.868 1 74.05 ? O2A CCQ 501 A 1 HETATM 36 O O5D CCQ . . . B 2 50.324 50.079 25.235 1 76.27 ? O5D CCQ 501 A 1 HETATM 37 C C5D CCQ . . . B 2 51.223 49.615 26.251 1 77.58 ? C5D CCQ 501 A 1 HETATM 38 C C4D CCQ . . . B 2 50.637 48.354 26.883 1 77.97 ? C4D CCQ 501 A 1 HETATM 39 C C3D CCQ . . . B 2 50.911 47.129 26.027 1 78.88 ? C3D CCQ 501 A 1 HETATM 40 O O3D CCQ . . . B 2 51.4 46.093 26.866 1 80.71 ? O3D CCQ 501 A 1 HETATM 41 P P3D CCQ . . . B 2 52.868 45.431 26.757 1 82.32 ? P3D CCQ 501 A 1 HETATM 42 O O7A CCQ . . . B 2 52.666 44.133 27.511 1 81.95 ? O7A CCQ 501 A 1 HETATM 43 O O8A CCQ . . . B 2 53.135 45.223 25.283 1 83.27 ? O8A CCQ 501 A 1 HETATM 44 O O9A CCQ . . . B 2 53.788 46.445 27.417 1 81.68 ? O9A CCQ 501 A 1 HETATM 45 C C2D CCQ . . . B 2 49.552 46.709 25.511 1 79.09 ? C2D CCQ 501 A 1 HETATM 46 O O2D CCQ . . . B 2 49.431 45.289 25.348 1 79.07 ? O2D CCQ 501 A 1 HETATM 47 C C1D CCQ . . . B 2 48.59 47.265 26.553 1 79.16 ? C1D CCQ 501 A 1 HETATM 48 O O4D CCQ . . . B 2 49.213 48.463 27.014 1 77.89 ? O4D CCQ 501 A 1 HETATM 49 N N9A CCQ . . . B 2 47.23 47.471 25.975 1 79.85 ? N9A CCQ 501 A 1 HETATM 50 C C4A CCQ . . . B 2 46.088 46.989 26.488 1 80.32 ? C4A CCQ 501 A 1 HETATM 51 C C5X CCQ . . . B 2 44.993 47.411 25.583 1 80.31 ? C5X CCQ 501 A 1 HETATM 52 N N7A CCQ . . . B 2 45.578 48.112 24.594 1 79.91 ? N7A CCQ 501 A 1 HETATM 53 C C8A CCQ . . . B 2 46.918 48.136 24.842 1 79.92 ? C8A CCQ 501 A 1 HETATM 54 C C6A CCQ . . . B 2 43.602 46.998 25.944 1 80.22 ? C6A CCQ 501 A 1 HETATM 55 N N6A CCQ . . . B 2 42.526 47.333 25.184 1 79.64 ? N6A CCQ 501 A 1 HETATM 56 N N1A CCQ . . . B 2 43.438 46.264 27.073 1 79.93 ? N1A CCQ 501 A 1 HETATM 57 C C2A CCQ . . . B 2 44.487 45.922 27.846 1 80.09 ? C2A CCQ 501 A 1 HETATM 58 N N3A CCQ . . . B 2 45.768 46.261 27.587 1 80.01 ? N3A CCQ 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 58 #