data_1XWF
#
_model_server_result.job_id            I5XOmRXhfDyvnm_pPK-qtA 
_model_server_result.datetime_utc      '2024-11-24 23:01:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xwf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":432}' 
#
_entry.id    1XWF 
#
_exptl.entry_id    1XWF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.5 
_cell.angle_gamma         90 
_cell.entry_id            1XWF 
_cell.length_a            90.34 
_cell.length_b            109.37 
_cell.length_c            104.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XWF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 271 n n 
PA O2A NAD sing 272 n n 
PA O5B NAD sing 273 n n 
PA O3 NAD sing 274 n n 
O2A HOA2 NAD sing 275 n n 
O5B C5B NAD sing 276 n n 
C5B C4B NAD sing 277 n n 
C5B H51A NAD sing 278 n n 
C5B H52A NAD sing 279 n n 
C4B O4B NAD sing 280 n n 
C4B C3B NAD sing 281 n n 
C4B H4B NAD sing 282 n n 
O4B C1B NAD sing 283 n n 
C3B O3B NAD sing 284 n n 
C3B C2B NAD sing 285 n n 
C3B H3B NAD sing 286 n n 
O3B HO3A NAD sing 287 n n 
C2B O2B NAD sing 288 n n 
C2B C1B NAD sing 289 n n 
C2B H2B NAD sing 290 n n 
O2B HO2A NAD sing 291 n n 
C1B N9A NAD sing 292 n n 
C1B H1B NAD sing 293 n n 
N9A C8A NAD sing 294 n y 
N9A C4A NAD sing 295 n y 
C8A N7A NAD doub 296 n y 
C8A H8A NAD sing 297 n n 
N7A C5A NAD sing 298 n y 
C5A C6A NAD sing 299 n y 
C5A C4A NAD doub 300 n y 
C6A N6A NAD sing 301 n n 
C6A N1A NAD doub 302 n y 
N6A H61A NAD sing 303 n n 
N6A H62A NAD sing 304 n n 
N1A C2A NAD sing 305 n y 
C2A N3A NAD doub 306 n y 
C2A H2A NAD sing 307 n n 
N3A C4A NAD sing 308 n y 
O3 PN NAD sing 309 n n 
PN O1N NAD doub 310 n n 
PN O2N NAD sing 311 n n 
PN O5D NAD sing 312 n n 
O5D C5D NAD sing 313 n n 
C5D C4D NAD sing 314 n n 
C5D H51N NAD sing 315 n n 
C5D H52N NAD sing 316 n n 
C4D O4D NAD sing 317 n n 
C4D C3D NAD sing 318 n n 
C4D H4D NAD sing 319 n n 
O4D C1D NAD sing 320 n n 
C3D O3D NAD sing 321 n n 
C3D C2D NAD sing 322 n n 
C3D H3D NAD sing 323 n n 
O3D HO3N NAD sing 324 n n 
C2D O2D NAD sing 325 n n 
C2D C1D NAD sing 326 n n 
C2D H2D NAD sing 327 n n 
O2D HO2N NAD sing 328 n n 
C1D N1N NAD sing 329 n n 
C1D H1D NAD sing 330 n n 
N1N C2N NAD sing 331 n y 
N1N C6N NAD doub 332 n y 
C2N C3N NAD doub 333 n y 
C2N H2N NAD sing 334 n n 
C3N C7N NAD sing 335 n n 
C3N C4N NAD sing 336 n y 
C7N O7N NAD doub 337 n n 
C7N N7N NAD sing 338 n n 
N7N H71N NAD sing 339 n n 
N7N H72N NAD sing 340 n n 
C4N C5N NAD doub 341 n y 
C4N H4N NAD sing 342 n n 
C5N C6N NAD sing 343 n y 
C5N H5N NAD sing 344 n n 
C6N H6N NAD sing 345 n n 
#
_atom_sites.entry_id                     1XWF 
_atom_sites.fract_transf_matrix[1][1]    0.011069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00528 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010646 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 432 132 NAD NAD . 
F 3 ADN A 1 433 133 ADN ADN . 
G 2 NAD B 1 432 232 NAD NAD . 
H 3 ADN B 1 433 233 ADN ADN . 
I 2 NAD C 1 432 332 NAD NAD . 
J 3 ADN C 1 433 333 ADN ADN . 
K 2 NAD D 1 432 432 NAD NAD . 
L 3 ADN D 1 433 433 ADN ADN . 
M 4 HOH A 1 434 7 HOH H2O . 
M 4 HOH A 2 435 14 HOH H2O . 
M 4 HOH A 3 436 18 HOH H2O . 
M 4 HOH A 4 437 26 HOH H2O . 
M 4 HOH A 5 438 35 HOH H2O . 
M 4 HOH A 6 439 36 HOH H2O . 
M 4 HOH A 7 440 37 HOH H2O . 
M 4 HOH A 8 441 39 HOH H2O . 
M 4 HOH A 9 442 40 HOH H2O . 
N 4 HOH B 1 434 3 HOH H2O . 
N 4 HOH B 2 435 5 HOH H2O . 
N 4 HOH B 3 436 6 HOH H2O . 
N 4 HOH B 4 437 8 HOH H2O . 
N 4 HOH B 5 438 13 HOH H2O . 
N 4 HOH B 6 439 15 HOH H2O . 
N 4 HOH B 7 440 19 HOH H2O . 
N 4 HOH B 8 441 22 HOH H2O . 
N 4 HOH B 9 442 23 HOH H2O . 
N 4 HOH B 10 443 25 HOH H2O . 
N 4 HOH B 11 444 28 HOH H2O . 
N 4 HOH B 12 445 29 HOH H2O . 
O 4 HOH C 1 434 1 HOH H2O . 
O 4 HOH C 2 435 2 HOH H2O . 
O 4 HOH C 3 436 11 HOH H2O . 
O 4 HOH C 4 437 12 HOH H2O . 
O 4 HOH C 5 438 16 HOH H2O . 
O 4 HOH C 6 439 21 HOH H2O . 
O 4 HOH C 7 440 24 HOH H2O . 
O 4 HOH C 8 441 27 HOH H2O . 
O 4 HOH C 9 442 31 HOH H2O . 
O 4 HOH C 10 443 34 HOH H2O . 
O 4 HOH C 11 444 38 HOH H2O . 
P 4 HOH D 1 434 4 HOH H2O . 
P 4 HOH D 2 435 9 HOH H2O . 
P 4 HOH D 3 436 10 HOH H2O . 
P 4 HOH D 4 437 17 HOH H2O . 
P 4 HOH D 5 438 20 HOH H2O . 
P 4 HOH D 6 439 30 HOH H2O . 
P 4 HOH D 7 440 32 HOH H2O . 
P 4 HOH D 8 441 33 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . K 2 28.081 26.367 6.274 1 19.43 ? PA NAD 432 D 1 
HETATM 2 O O1A NAD . . . K 2 28.071 25.796 4.893 1 18.6 ? O1A NAD 432 D 1 
HETATM 3 O O2A NAD . . . K 2 29.025 27.515 6.447 1 18.36 ? O2A NAD 432 D 1 
HETATM 4 O O5B NAD . . . K 2 28.509 25.285 7.348 1 11.84 ? O5B NAD 432 D 1 
HETATM 5 C C5B NAD . . . K 2 27.837 24.038 7.509 1 2 ? C5B NAD 432 D 1 
HETATM 6 C C4B NAD . . . K 2 28.852 23.232 8.227 1 4.85 ? C4B NAD 432 D 1 
HETATM 7 O O4B NAD . . . K 2 28.283 21.925 8.484 1 4.53 ? O4B NAD 432 D 1 
HETATM 8 C C3B NAD . . . K 2 30.135 22.948 7.42 1 15.69 ? C3B NAD 432 D 1 
HETATM 9 O O3B NAD . . . K 2 31.328 23.546 8.002 1 18.46 ? O3B NAD 432 D 1 
HETATM 10 C C2B NAD . . . K 2 30.128 21.413 7.339 1 17.61 ? C2B NAD 432 D 1 
HETATM 11 O O2B NAD . . . K 2 31.457 20.857 7.323 1 12.75 ? O2B NAD 432 D 1 
HETATM 12 C C1B NAD . . . K 2 29.285 20.999 8.559 1 15.41 ? C1B NAD 432 D 1 
HETATM 13 N N9A NAD . . . K 2 28.674 19.666 8.443 1 11.08 ? N9A NAD 432 D 1 
HETATM 14 C C8A NAD . . . K 2 28.006 19.137 7.374 1 14.19 ? C8A NAD 432 D 1 
HETATM 15 N N7A NAD . . . K 2 27.569 17.884 7.569 1 18.78 ? N7A NAD 432 D 1 
HETATM 16 C C5A NAD . . . K 2 27.978 17.619 8.836 1 14.93 ? C5A NAD 432 D 1 
HETATM 17 C C6A NAD . . . K 2 27.835 16.442 9.654 1 17.99 ? C6A NAD 432 D 1 
HETATM 18 N N6A NAD . . . K 2 27.215 15.321 9.27 1 21.82 ? N6A NAD 432 D 1 
HETATM 19 N N1A NAD . . . K 2 28.387 16.475 10.935 1 17.2 ? N1A NAD 432 D 1 
HETATM 20 C C2A NAD . . . K 2 29.038 17.632 11.351 1 20.72 ? C2A NAD 432 D 1 
HETATM 21 N N3A NAD . . . K 2 29.208 18.762 10.632 1 18.52 ? N3A NAD 432 D 1 
HETATM 22 C C4A NAD . . . K 2 28.671 18.697 9.398 1 15.05 ? C4A NAD 432 D 1 
HETATM 23 O O3 NAD . . . K 2 26.597 26.767 6.538 1 14.36 ? O3 NAD 432 D 1 
HETATM 24 P PN NAD . . . K 2 26.077 27.893 7.511 1 19.93 ? PN NAD 432 D 1 
HETATM 25 O O1N NAD . . . K 2 26.124 29.289 6.98 1 8.81 ? O1N NAD 432 D 1 
HETATM 26 O O2N NAD . . . K 2 26.862 27.715 8.792 1 18.88 ? O2N NAD 432 D 1 
HETATM 27 O O5D NAD . . . K 2 24.544 27.379 7.544 1 16.49 ? O5D NAD 432 D 1 
HETATM 28 C C5D NAD . . . K 2 24.197 26.039 8.028 1 13.59 ? C5D NAD 432 D 1 
HETATM 29 C C4D NAD . . . K 2 22.701 25.882 7.921 1 17.21 ? C4D NAD 432 D 1 
HETATM 30 O O4D NAD . . . K 2 22.017 26.9 8.707 1 18.25 ? O4D NAD 432 D 1 
HETATM 31 C C3D NAD . . . K 2 22.112 26.013 6.51 1 16.78 ? C3D NAD 432 D 1 
HETATM 32 O O3D NAD . . . K 2 21.071 25.038 6.328 1 18.64 ? O3D NAD 432 D 1 
HETATM 33 C C2D NAD . . . K 2 21.602 27.426 6.471 1 20.7 ? C2D NAD 432 D 1 
HETATM 34 O O2D NAD . . . K 2 20.642 27.695 5.418 1 23.07 ? O2D NAD 432 D 1 
HETATM 35 C C1D NAD . . . K 2 21.09 27.571 7.873 1 17.52 ? C1D NAD 432 D 1 
HETATM 36 N N1N NAD . . . K 2 20.897 28.983 8.305 1 19.35 ? N1N NAD 432 D 1 
HETATM 37 C C2N NAD . . . K 2 19.948 29.211 9.35 1 19.11 ? C2N NAD 432 D 1 
HETATM 38 C C3N NAD . . . K 2 19.647 30.565 9.873 1 19.46 ? C3N NAD 432 D 1 
HETATM 39 C C7N NAD . . . K 2 18.63 30.63 10.978 1 22.13 ? C7N NAD 432 D 1 
HETATM 40 O O7N NAD . . . K 2 18.396 31.798 11.397 1 22.16 ? O7N NAD 432 D 1 
HETATM 41 N N7N NAD . . . K 2 18.007 29.519 11.5 1 18.88 ? N7N NAD 432 D 1 
HETATM 42 C C4N NAD . . . K 2 20.372 31.737 9.271 1 14.53 ? C4N NAD 432 D 1 
HETATM 43 C C5N NAD . . . K 2 21.389 31.43 8.15 1 19.06 ? C5N NAD 432 D 1 
HETATM 44 C C6N NAD . . . K 2 21.6 30.151 7.737 1 19.4 ? C6N NAD 432 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#