data_1XWF # _model_server_result.job_id 2N-g4U4BD4EraDyYG-Az9Q _model_server_result.datetime_utc '2024-11-02 11:20:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":433}' # _entry.id 1XWF # _exptl.entry_id 1XWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.5 _cell.angle_gamma 90 _cell.entry_id 1XWF _cell.length_a 90.34 _cell.length_b 109.37 _cell.length_c 104.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 1XWF _atom_sites.fract_transf_matrix[1][1] 0.011069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00528 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 432 132 NAD NAD . F 3 ADN A 1 433 133 ADN ADN . G 2 NAD B 1 432 232 NAD NAD . H 3 ADN B 1 433 233 ADN ADN . I 2 NAD C 1 432 332 NAD NAD . J 3 ADN C 1 433 333 ADN ADN . K 2 NAD D 1 432 432 NAD NAD . L 3 ADN D 1 433 433 ADN ADN . M 4 HOH A 1 434 7 HOH H2O . M 4 HOH A 2 435 14 HOH H2O . M 4 HOH A 3 436 18 HOH H2O . M 4 HOH A 4 437 26 HOH H2O . M 4 HOH A 5 438 35 HOH H2O . M 4 HOH A 6 439 36 HOH H2O . M 4 HOH A 7 440 37 HOH H2O . M 4 HOH A 8 441 39 HOH H2O . M 4 HOH A 9 442 40 HOH H2O . N 4 HOH B 1 434 3 HOH H2O . N 4 HOH B 2 435 5 HOH H2O . N 4 HOH B 3 436 6 HOH H2O . N 4 HOH B 4 437 8 HOH H2O . N 4 HOH B 5 438 13 HOH H2O . N 4 HOH B 6 439 15 HOH H2O . N 4 HOH B 7 440 19 HOH H2O . N 4 HOH B 8 441 22 HOH H2O . N 4 HOH B 9 442 23 HOH H2O . N 4 HOH B 10 443 25 HOH H2O . N 4 HOH B 11 444 28 HOH H2O . N 4 HOH B 12 445 29 HOH H2O . O 4 HOH C 1 434 1 HOH H2O . O 4 HOH C 2 435 2 HOH H2O . O 4 HOH C 3 436 11 HOH H2O . O 4 HOH C 4 437 12 HOH H2O . O 4 HOH C 5 438 16 HOH H2O . O 4 HOH C 6 439 21 HOH H2O . O 4 HOH C 7 440 24 HOH H2O . O 4 HOH C 8 441 27 HOH H2O . O 4 HOH C 9 442 31 HOH H2O . O 4 HOH C 10 443 34 HOH H2O . O 4 HOH C 11 444 38 HOH H2O . P 4 HOH D 1 434 4 HOH H2O . P 4 HOH D 2 435 9 HOH H2O . P 4 HOH D 3 436 10 HOH H2O . P 4 HOH D 4 437 17 HOH H2O . P 4 HOH D 5 438 20 HOH H2O . P 4 HOH D 6 439 30 HOH H2O . P 4 HOH D 7 440 32 HOH H2O . P 4 HOH D 8 441 33 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . L 3 14.704 30.63 7.513 1 23.4 ? O5' ADN 433 D 1 HETATM 2 C C5' ADN . . . L 3 16.068 31.076 7.412 1 21.19 ? C5' ADN 433 D 1 HETATM 3 C C4' ADN . . . L 3 15.975 32.627 7.288 1 19.69 ? C4' ADN 433 D 1 HETATM 4 O O4' ADN . . . L 3 15.47 33.251 8.51 1 10.93 ? O4' ADN 433 D 1 HETATM 5 C C3' ADN . . . L 3 17.301 33.379 7.157 1 23.98 ? C3' ADN 433 D 1 HETATM 6 O O3' ADN . . . L 3 17.687 33.416 5.745 1 22.94 ? O3' ADN 433 D 1 HETATM 7 C C2' ADN . . . L 3 17.015 34.773 7.767 1 19.53 ? C2' ADN 433 D 1 HETATM 8 O O2' ADN . . . L 3 17.346 35.88 6.927 1 26.46 ? O2' ADN 433 D 1 HETATM 9 C C1' ADN . . . L 3 15.552 34.604 8.154 1 16.5 ? C1' ADN 433 D 1 HETATM 10 N N9 ADN . . . L 3 15.11 35.482 9.249 1 16.44 ? N9 ADN 433 D 1 HETATM 11 C C8 ADN . . . L 3 15.496 35.373 10.588 1 17.8 ? C8 ADN 433 D 1 HETATM 12 N N7 ADN . . . L 3 14.979 36.262 11.385 1 18.91 ? N7 ADN 433 D 1 HETATM 13 C C5 ADN . . . L 3 14.19 37.03 10.545 1 14.6 ? C5 ADN 433 D 1 HETATM 14 C C6 ADN . . . L 3 13.337 38.181 10.762 1 18.15 ? C6 ADN 433 D 1 HETATM 15 N N6 ADN . . . L 3 13.178 38.726 11.97 1 19.45 ? N6 ADN 433 D 1 HETATM 16 N N1 ADN . . . L 3 12.665 38.722 9.661 1 15.23 ? N1 ADN 433 D 1 HETATM 17 C C2 ADN . . . L 3 12.823 38.165 8.426 1 16.78 ? C2 ADN 433 D 1 HETATM 18 N N3 ADN . . . L 3 13.603 37.078 8.118 1 20.49 ? N3 ADN 433 D 1 HETATM 19 C C4 ADN . . . L 3 14.254 36.564 9.217 1 18.63 ? C4 ADN 433 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #