data_1XX4 # _model_server_result.job_id gi5bxBpJCVBHYrwdwN-PVA _model_server_result.datetime_utc '2024-10-19 15:33:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 1XX4 # _exptl.entry_id 1XX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XX4 _cell.length_a 169.918 _cell.length_b 169.918 _cell.length_c 169.918 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2,3 A,B,C,D,E,F,G,H,I,J,K 2 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 169.918 -84.959 84.959 3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0 1 0 0 0 -1 -1 0 0 84.959 84.959 169.918 4 'crystal symmetry operation' 43_655 -x+5/4,-z+1/4,-y+1/4 -1 0 0 0 0 -1 0 -1 0 212.3975 42.4795 42.4795 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 79 A HIS 107 1_555 E ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 A OE1 GLU 82 A GLU 110 1_555 E ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A ND1 HIS 192 A HIS 220 1_555 F ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 B O4 PO4 . A PO4 300 1_555 E ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 B O3 PO4 . A PO4 300 43_655 E ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 C O3 PO4 . A PO4 301 1_555 F ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc7 C O1 PO4 . A PO4 301 1_555 G ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc8 C O4 PO4 . A PO4 301 1_555 G ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc9 D O3 PO4 . A PO4 302 1_555 F ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc10 D O4 PO4 . A PO4 302 1_555 G ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc11 D O1 PO4 . A PO4 302 1_555 G ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XX4 _atom_sites.fract_transf_matrix[1][1] 0.005884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 300 300 PO4 PO4 . C 2 PO4 A 1 301 301 PO4 PO4 . D 2 PO4 A 1 302 302 PO4 PO4 . E 3 ZN A 1 400 400 ZN ZN . F 3 ZN A 1 401 401 ZN ZN . G 3 ZN A 1 402 402 ZN ZN . H 4 BEN A 1 600 600 BEN BAM . I 4 BEN A 1 700 700 BEN BAM . J 4 BEN A 1 800 800 BEN BAM . K 5 HOH A 1 500 500 HOH WAT . K 5 HOH A 2 501 501 HOH WAT . K 5 HOH A 3 502 502 HOH WAT . K 5 HOH A 4 503 503 HOH WAT . K 5 HOH A 5 504 504 HOH WAT . K 5 HOH A 6 505 505 HOH WAT . K 5 HOH A 7 506 506 HOH WAT . K 5 HOH A 8 507 507 HOH WAT . K 5 HOH A 9 508 508 HOH WAT . K 5 HOH A 10 509 509 HOH WAT . K 5 HOH A 11 510 510 HOH WAT . K 5 HOH A 12 511 511 HOH WAT . K 5 HOH A 13 512 512 HOH WAT . K 5 HOH A 14 513 513 HOH WAT . K 5 HOH A 15 514 514 HOH WAT . K 5 HOH A 16 515 515 HOH WAT . K 5 HOH A 17 516 516 HOH WAT . K 5 HOH A 18 517 517 HOH WAT . K 5 HOH A 19 518 518 HOH WAT . K 5 HOH A 20 519 519 HOH WAT . K 5 HOH A 21 520 520 HOH WAT . K 5 HOH A 22 521 521 HOH WAT . K 5 HOH A 23 522 522 HOH WAT . K 5 HOH A 24 523 523 HOH WAT . K 5 HOH A 25 524 524 HOH WAT . K 5 HOH A 26 525 525 HOH WAT . K 5 HOH A 27 526 526 HOH WAT . K 5 HOH A 28 527 527 HOH WAT . K 5 HOH A 29 528 528 HOH WAT . K 5 HOH A 30 529 529 HOH WAT . K 5 HOH A 31 530 530 HOH WAT . K 5 HOH A 32 531 531 HOH WAT . K 5 HOH A 33 532 532 HOH WAT . K 5 HOH A 34 533 533 HOH WAT . K 5 HOH A 35 534 534 HOH WAT . K 5 HOH A 36 535 535 HOH WAT . K 5 HOH A 37 536 536 HOH WAT . K 5 HOH A 38 537 537 HOH WAT . K 5 HOH A 39 538 538 HOH WAT . K 5 HOH A 40 539 539 HOH WAT . K 5 HOH A 41 540 540 HOH WAT . K 5 HOH A 42 541 541 HOH WAT . K 5 HOH A 43 542 542 HOH WAT . K 5 HOH A 44 543 543 HOH WAT . K 5 HOH A 45 544 544 HOH WAT . K 5 HOH A 46 545 545 HOH WAT . K 5 HOH A 47 546 546 HOH WAT . K 5 HOH A 48 547 547 HOH WAT . K 5 HOH A 49 548 548 HOH WAT . K 5 HOH A 50 549 549 HOH WAT . K 5 HOH A 51 550 550 HOH WAT . K 5 HOH A 52 552 552 HOH WAT . K 5 HOH A 53 553 553 HOH WAT . K 5 HOH A 54 554 554 HOH WAT . K 5 HOH A 55 555 555 HOH WAT . K 5 HOH A 56 556 556 HOH WAT . K 5 HOH A 57 557 557 HOH WAT . K 5 HOH A 58 558 558 HOH WAT . K 5 HOH A 59 559 559 HOH WAT . K 5 HOH A 60 560 560 HOH WAT . K 5 HOH A 61 561 561 HOH WAT . K 5 HOH A 62 562 562 HOH WAT . K 5 HOH A 63 563 563 HOH WAT . K 5 HOH A 64 564 564 HOH WAT . K 5 HOH A 65 565 565 HOH WAT . K 5 HOH A 66 566 566 HOH WAT . K 5 HOH A 67 567 567 HOH WAT . K 5 HOH A 68 568 568 HOH WAT . K 5 HOH A 69 569 569 HOH WAT . K 5 HOH A 70 570 570 HOH WAT . K 5 HOH A 71 571 571 HOH WAT . K 5 HOH A 72 572 572 HOH WAT . K 5 HOH A 73 573 573 HOH WAT . K 5 HOH A 74 574 574 HOH WAT . K 5 HOH A 75 575 575 HOH WAT . K 5 HOH A 76 576 576 HOH WAT . K 5 HOH A 77 577 577 HOH WAT . K 5 HOH A 78 578 578 HOH WAT . K 5 HOH A 79 579 579 HOH WAT . K 5 HOH A 80 580 580 HOH WAT . K 5 HOH A 81 581 581 HOH WAT . K 5 HOH A 82 582 582 HOH WAT . K 5 HOH A 83 583 583 HOH WAT . K 5 HOH A 84 584 584 HOH WAT . K 5 HOH A 85 585 585 HOH WAT . K 5 HOH A 86 586 586 HOH WAT . K 5 HOH A 87 587 587 HOH WAT . K 5 HOH A 88 589 589 HOH WAT . K 5 HOH A 89 590 590 HOH WAT . K 5 HOH A 90 591 591 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 107.081 _atom_site.Cartn_y 27.541 _atom_site.Cartn_z 17.506 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #