data_1XX7
#
_model_server_result.job_id            XSD1pr4zZkrjUKEiwiyPbA 
_model_server_result.datetime_utc      '2025-02-28 22:14:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xx7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    1XX7 
#
_exptl.entry_id    1XX7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XX7 
_cell.length_a            98.073 
_cell.length_b            111.335 
_cell.length_c            125.984 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XX7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 M N N 
? 2 R N N 
? 2 T N N 
? 2 Y N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 33 1_555 G NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc2 A NE2 HIS 75 A HIS 67 1_555 G NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc3 A OD2 ASP 76 A ASP 68 1_555 G NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 A OD1 ASP 132 A ASP 124 1_555 G NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc5 B NE2 HIS 41 B HIS 33 1_555 M NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc6 B NE2 HIS 75 B HIS 67 1_555 M NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc7 B OD2 ASP 76 B ASP 68 1_555 M NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc8 B OD1 ASP 132 B ASP 124 1_555 M NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc9 C NE2 HIS 41 C HIS 33 1_555 R NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc10 C NE2 HIS 75 C HIS 67 1_555 R NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc11 C OD2 ASP 76 C ASP 68 1_555 R NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc12 C OD1 ASP 132 C ASP 124 1_555 R NI NI . C NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc13 D NE2 HIS 41 D HIS 33 1_555 T NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc14 D NE2 HIS 75 D HIS 67 1_555 T NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc15 D OD2 ASP 76 D ASP 68 1_555 T NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc16 D OD1 ASP 132 D ASP 124 1_555 T NI NI . D NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc17 E NE2 HIS 41 E HIS 33 1_555 Y NI NI . E NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc18 E NE2 HIS 75 E HIS 67 1_555 Y NI NI . E NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc19 E OD2 ASP 76 E ASP 68 1_555 Y NI NI . E NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc20 E OD1 ASP 132 E ASP 124 1_555 Y NI NI . E NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc21 F NE2 HIS 41 F HIS 33 1_555 CA NI NI . F NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc22 F NE2 HIS 75 F HIS 67 1_555 CA NI NI . F NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc23 F OD2 ASP 76 F ASP 68 1_555 CA NI NI . F NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc24 F OD1 ASP 132 F ASP 124 1_555 CA NI NI . F NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XX7 
_atom_sites.fract_transf_matrix[1][1]    0.010196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007938 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NI A 1 201 201 NI NI . 
H 3 UNX A 1 2001 2001 UNX UNX . 
I 3 UNX A 1 2002 2002 UNX UNX . 
J 3 UNX A 1 2003 2003 UNX UNX . 
K 3 UNX A 1 2006 2006 UNX UNX . 
L 3 UNX A 1 2019 2019 UNX UNX . 
M 2 NI B 1 201 201 NI NI . 
N 3 UNX B 1 2004 2004 UNX UNX . 
O 3 UNX B 1 2005 2005 UNX UNX . 
P 3 UNX B 1 2007 2007 UNX UNX . 
Q 3 UNX B 1 2009 2009 UNX UNX . 
R 2 NI C 1 201 201 NI NI . 
S 3 UNX C 1 2008 2008 UNX UNX . 
T 2 NI D 1 201 201 NI NI . 
U 3 UNX D 1 2010 2010 UNX UNX . 
V 3 UNX D 1 2011 2011 UNX UNX . 
W 3 UNX D 1 2012 2012 UNX UNX . 
X 3 UNX D 1 2015 2015 UNX UNX . 
Y 2 NI E 1 201 201 NI NI . 
Z 3 UNX E 1 2013 2013 UNX UNX . 
AA 3 UNX E 1 2014 2014 UNX UNX . 
BA 3 UNX E 1 2018 2018 UNX UNX . 
CA 2 NI F 1 201 201 NI NI . 
DA 3 UNX F 1 2016 2016 UNX UNX . 
EA 3 UNX F 1 2017 2017 UNX UNX . 
FA 4 HOH A 1 1001 1001 HOH HOH . 
FA 4 HOH A 2 1002 1002 HOH HOH . 
FA 4 HOH A 3 1003 1003 HOH HOH . 
FA 4 HOH A 4 1004 1004 HOH HOH . 
FA 4 HOH A 5 1005 1005 HOH HOH . 
FA 4 HOH A 6 1006 1006 HOH HOH . 
FA 4 HOH A 7 1037 1037 HOH HOH . 
FA 4 HOH A 8 1038 1038 HOH HOH . 
FA 4 HOH A 9 1055 1055 HOH HOH . 
FA 4 HOH A 10 1063 1063 HOH HOH . 
FA 4 HOH A 11 1064 1064 HOH HOH . 
FA 4 HOH A 12 1067 1067 HOH HOH . 
FA 4 HOH A 13 1068 1068 HOH HOH . 
GA 4 HOH B 1 1007 1007 HOH HOH . 
GA 4 HOH B 2 1008 1008 HOH HOH . 
GA 4 HOH B 3 1009 1009 HOH HOH . 
GA 4 HOH B 4 1010 1010 HOH HOH . 
GA 4 HOH B 5 1011 1011 HOH HOH . 
GA 4 HOH B 6 1012 1012 HOH HOH . 
GA 4 HOH B 7 1039 1039 HOH HOH . 
GA 4 HOH B 8 1040 1040 HOH HOH . 
GA 4 HOH B 9 1041 1041 HOH HOH . 
GA 4 HOH B 10 1056 1056 HOH HOH . 
GA 4 HOH B 11 1069 1069 HOH HOH . 
HA 4 HOH C 1 1013 1013 HOH HOH . 
HA 4 HOH C 2 1014 1014 HOH HOH . 
HA 4 HOH C 3 1015 1015 HOH HOH . 
HA 4 HOH C 4 1016 1016 HOH HOH . 
HA 4 HOH C 5 1017 1017 HOH HOH . 
HA 4 HOH C 6 1018 1018 HOH HOH . 
HA 4 HOH C 7 1042 1042 HOH HOH . 
HA 4 HOH C 8 1043 1043 HOH HOH . 
HA 4 HOH C 9 1053 1053 HOH HOH . 
HA 4 HOH C 10 1057 1057 HOH HOH . 
IA 4 HOH D 1 1019 1019 HOH HOH . 
IA 4 HOH D 2 1020 1020 HOH HOH . 
IA 4 HOH D 3 1021 1021 HOH HOH . 
IA 4 HOH D 4 1022 1022 HOH HOH . 
IA 4 HOH D 5 1023 1023 HOH HOH . 
IA 4 HOH D 6 1024 1024 HOH HOH . 
IA 4 HOH D 7 1045 1045 HOH HOH . 
IA 4 HOH D 8 1047 1047 HOH HOH . 
IA 4 HOH D 9 1052 1052 HOH HOH . 
IA 4 HOH D 10 1054 1054 HOH HOH . 
IA 4 HOH D 11 1058 1058 HOH HOH . 
IA 4 HOH D 12 1062 1062 HOH HOH . 
IA 4 HOH D 13 1066 1066 HOH HOH . 
JA 4 HOH E 1 1025 1025 HOH HOH . 
JA 4 HOH E 2 1026 1026 HOH HOH . 
JA 4 HOH E 3 1027 1027 HOH HOH . 
JA 4 HOH E 4 1028 1028 HOH HOH . 
JA 4 HOH E 5 1029 1029 HOH HOH . 
JA 4 HOH E 6 1030 1030 HOH HOH . 
JA 4 HOH E 7 1044 1044 HOH HOH . 
JA 4 HOH E 8 1046 1046 HOH HOH . 
JA 4 HOH E 9 1049 1049 HOH HOH . 
JA 4 HOH E 10 1050 1050 HOH HOH . 
JA 4 HOH E 11 1059 1059 HOH HOH . 
KA 4 HOH F 1 1031 1031 HOH HOH . 
KA 4 HOH F 2 1032 1032 HOH HOH . 
KA 4 HOH F 3 1033 1033 HOH HOH . 
KA 4 HOH F 4 1034 1034 HOH HOH . 
KA 4 HOH F 5 1035 1035 HOH HOH . 
KA 4 HOH F 6 1036 1036 HOH HOH . 
KA 4 HOH F 7 1048 1048 HOH HOH . 
KA 4 HOH F 8 1051 1051 HOH HOH . 
KA 4 HOH F 9 1060 1060 HOH HOH . 
KA 4 HOH F 10 1061 1061 HOH HOH . 
KA 4 HOH F 11 1065 1065 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               52.826 
_atom_site.Cartn_y               68.033 
_atom_site.Cartn_z               9.249 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           493 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#