data_1XXB # _model_server_result.job_id PQWIoBJoi50VG_0dFtcG-Q _model_server_result.datetime_utc '2024-11-20 17:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":157}' # _entry.id 1XXB # _exptl.entry_id 1XXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XXB _cell.length_a 53.5 _cell.length_b 85.4 _cell.length_c 217 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 1XXB _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ARG A 1 1 1 ARG ARG . H 2 ARG A 1 157 1 ARG ARG . I 2 ARG C 1 1 1 ARG ARG . J 2 ARG E 1 1 1 ARG ARG . K 2 ARG F 1 1 1 ARG ARG . L 2 ARG F 1 157 1 ARG ARG . M 3 HOH A 1 158 11 HOH HOH . M 3 HOH A 2 159 15 HOH HOH . M 3 HOH A 3 160 28 HOH HOH . M 3 HOH A 4 161 30 HOH HOH . M 3 HOH A 5 162 43 HOH HOH . M 3 HOH A 6 163 52 HOH HOH . M 3 HOH A 7 164 58 HOH HOH . M 3 HOH A 8 165 60 HOH HOH . M 3 HOH A 9 166 61 HOH HOH . M 3 HOH A 10 167 78 HOH HOH . M 3 HOH A 11 168 83 HOH HOH . M 3 HOH A 12 169 84 HOH HOH . M 3 HOH A 13 170 86 HOH HOH . M 3 HOH A 14 171 87 HOH HOH . M 3 HOH A 15 172 92 HOH HOH . M 3 HOH A 16 173 94 HOH HOH . M 3 HOH A 17 174 98 HOH HOH . M 3 HOH A 18 175 100 HOH HOH . M 3 HOH A 19 176 109 HOH HOH . N 3 HOH B 1 157 5 HOH HOH . N 3 HOH B 2 158 6 HOH HOH . N 3 HOH B 3 159 14 HOH HOH . N 3 HOH B 4 160 17 HOH HOH . N 3 HOH B 5 161 25 HOH HOH . N 3 HOH B 6 162 33 HOH HOH . N 3 HOH B 7 163 34 HOH HOH . N 3 HOH B 8 164 40 HOH HOH . N 3 HOH B 9 165 47 HOH HOH . N 3 HOH B 10 166 57 HOH HOH . N 3 HOH B 11 167 62 HOH HOH . N 3 HOH B 12 168 63 HOH HOH . N 3 HOH B 13 169 67 HOH HOH . N 3 HOH B 14 170 69 HOH HOH . N 3 HOH B 15 171 75 HOH HOH . N 3 HOH B 16 172 76 HOH HOH . N 3 HOH B 17 173 81 HOH HOH . N 3 HOH B 18 174 82 HOH HOH . N 3 HOH B 19 175 88 HOH HOH . N 3 HOH B 20 176 93 HOH HOH . N 3 HOH B 21 177 95 HOH HOH . N 3 HOH B 22 178 96 HOH HOH . N 3 HOH B 23 179 99 HOH HOH . N 3 HOH B 24 180 105 HOH HOH . N 3 HOH B 25 181 106 HOH HOH . O 3 HOH C 1 157 1 HOH HOH . O 3 HOH C 2 158 2 HOH HOH . O 3 HOH C 3 159 7 HOH HOH . O 3 HOH C 4 160 8 HOH HOH . O 3 HOH C 5 161 10 HOH HOH . O 3 HOH C 6 162 23 HOH HOH . O 3 HOH C 7 163 24 HOH HOH . O 3 HOH C 8 164 26 HOH HOH . O 3 HOH C 9 165 27 HOH HOH . O 3 HOH C 10 166 29 HOH HOH . O 3 HOH C 11 167 32 HOH HOH . O 3 HOH C 12 168 35 HOH HOH . O 3 HOH C 13 169 37 HOH HOH . O 3 HOH C 14 170 41 HOH HOH . O 3 HOH C 15 171 44 HOH HOH . O 3 HOH C 16 172 45 HOH HOH . O 3 HOH C 17 173 46 HOH HOH . O 3 HOH C 18 174 48 HOH HOH . O 3 HOH C 19 175 50 HOH HOH . O 3 HOH C 20 176 55 HOH HOH . O 3 HOH C 21 177 65 HOH HOH . O 3 HOH C 22 178 68 HOH HOH . O 3 HOH C 23 179 70 HOH HOH . O 3 HOH C 24 180 72 HOH HOH . O 3 HOH C 25 181 73 HOH HOH . O 3 HOH C 26 182 74 HOH HOH . O 3 HOH C 27 183 79 HOH HOH . O 3 HOH C 28 184 90 HOH HOH . O 3 HOH C 29 185 91 HOH HOH . O 3 HOH C 30 186 101 HOH HOH . O 3 HOH C 31 187 103 HOH HOH . P 3 HOH D 1 157 16 HOH HOH . P 3 HOH D 2 158 36 HOH HOH . P 3 HOH D 3 159 38 HOH HOH . P 3 HOH D 4 160 42 HOH HOH . P 3 HOH D 5 161 66 HOH HOH . P 3 HOH D 6 162 80 HOH HOH . P 3 HOH D 7 163 89 HOH HOH . P 3 HOH D 8 164 107 HOH HOH . Q 3 HOH E 1 157 4 HOH HOH . Q 3 HOH E 2 158 12 HOH HOH . Q 3 HOH E 3 159 13 HOH HOH . Q 3 HOH E 4 160 18 HOH HOH . Q 3 HOH E 5 161 19 HOH HOH . Q 3 HOH E 6 162 22 HOH HOH . Q 3 HOH E 7 163 51 HOH HOH . Q 3 HOH E 8 164 53 HOH HOH . Q 3 HOH E 9 165 54 HOH HOH . Q 3 HOH E 10 166 56 HOH HOH . Q 3 HOH E 11 167 59 HOH HOH . Q 3 HOH E 12 168 64 HOH HOH . Q 3 HOH E 13 169 97 HOH HOH . Q 3 HOH E 14 170 108 HOH HOH . Q 3 HOH E 15 171 110 HOH HOH . R 3 HOH F 1 158 3 HOH HOH . R 3 HOH F 2 159 9 HOH HOH . R 3 HOH F 3 160 20 HOH HOH . R 3 HOH F 4 161 21 HOH HOH . R 3 HOH F 5 162 31 HOH HOH . R 3 HOH F 6 163 39 HOH HOH . R 3 HOH F 7 164 49 HOH HOH . R 3 HOH F 8 165 71 HOH HOH . R 3 HOH F 9 166 77 HOH HOH . R 3 HOH F 10 167 85 HOH HOH . R 3 HOH F 11 168 102 HOH HOH . R 3 HOH F 12 169 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . L 2 3.737 76.482 34.469 1 28.03 ? N ARG 157 F 1 HETATM 2 C CA ARG . . . L 2 4.34 75.373 33.671 1 28.19 ? CA ARG 157 F 1 HETATM 3 C C ARG . . . L 2 5.857 75.511 33.513 1 30.53 ? C ARG 157 F 1 HETATM 4 O O ARG . . . L 2 6.462 74.56 32.99 1 35.49 ? O ARG 157 F 1 HETATM 5 C CB ARG . . . L 2 3.692 75.313 32.296 1 27.38 ? CB ARG 157 F 1 HETATM 6 C CG ARG . . . L 2 3.873 76.599 31.485 1 26.73 ? CG ARG 157 F 1 HETATM 7 C CD ARG . . . L 2 3.248 76.471 30.1 1 29.26 ? CD ARG 157 F 1 HETATM 8 N NE ARG . . . L 2 3.412 77.65 29.259 1 23.95 ? NE ARG 157 F 1 HETATM 9 C CZ ARG . . . L 2 4.193 77.674 28.197 1 21.1 ? CZ ARG 157 F 1 HETATM 10 N NH1 ARG . . . L 2 4.864 76.586 27.884 1 19.71 ? NH1 ARG 157 F 1 HETATM 11 N NH2 ARG . . . L 2 4.277 78.761 27.446 1 23.54 ? NH2 ARG 157 F 1 HETATM 12 O OXT ARG . . . L 2 6.434 76.55 33.902 1 33.3 ? OXT ARG 157 F 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #