data_1XXF # _model_server_result.job_id 69FNUU3r1xZO2RCcorFO5w _model_server_result.datetime_utc '2024-10-25 02:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 1XXF # _exptl.entry_id 1XXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XXF _cell.length_a 44.512 _cell.length_b 90.061 _cell.length_c 189.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XXF _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 29 B CYS 40 1_555 B SG CYS 45 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 127 B CYS 136 1_555 B SG CYS 194 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 158 B CYS 168 1_555 B SG CYS 173 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 184 B CYS 191 1_555 B SG CYS 212 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 C SG CYS 50 C CYS 50 1_555 C SG CYS 87 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 D SG CYS 50 D CYS 50 1_555 D SG CYS 87 D CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 B O TRP 128 B TRP 137 1_555 F NA NA . B NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc2 B O ALA 174 B ALA 183 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc3 B OD1 ASP 182 B ASP 189 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc4 B OG SER 193 B SER 198 1_555 F NA NA . B NA 1002 1_555 B ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 B OH TYR 221 B TYR 228 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XXF _atom_sites.fract_transf_matrix[1][1] 0.022466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA B 1 1001 1001 NA NA . F 3 NA B 1 1002 1002 NA NA . G 4 HOH A 1 246 1 HOH HOH . G 4 HOH A 2 247 2 HOH HOH . G 4 HOH A 3 248 3 HOH HOH . G 4 HOH A 4 249 4 HOH HOH . G 4 HOH A 5 250 5 HOH HOH . G 4 HOH A 6 251 7 HOH HOH . G 4 HOH A 7 252 8 HOH HOH . G 4 HOH A 8 253 9 HOH HOH . G 4 HOH A 9 254 10 HOH HOH . G 4 HOH A 10 255 11 HOH HOH . G 4 HOH A 11 256 13 HOH HOH . G 4 HOH A 12 257 14 HOH HOH . G 4 HOH A 13 258 15 HOH HOH . G 4 HOH A 14 259 16 HOH HOH . G 4 HOH A 15 260 17 HOH HOH . G 4 HOH A 16 261 18 HOH HOH . G 4 HOH A 17 262 19 HOH HOH . G 4 HOH A 18 263 28 HOH HOH . G 4 HOH A 19 264 29 HOH HOH . G 4 HOH A 20 265 37 HOH HOH . G 4 HOH A 21 266 38 HOH HOH . G 4 HOH A 22 267 39 HOH HOH . G 4 HOH A 23 268 42 HOH HOH . G 4 HOH A 24 269 44 HOH HOH . G 4 HOH A 25 270 46 HOH HOH . G 4 HOH A 26 271 48 HOH HOH . G 4 HOH A 27 272 51 HOH HOH . G 4 HOH A 28 273 53 HOH HOH . G 4 HOH A 29 274 55 HOH HOH . G 4 HOH A 30 275 56 HOH HOH . G 4 HOH A 31 276 57 HOH HOH . G 4 HOH A 32 277 58 HOH HOH . G 4 HOH A 33 278 59 HOH HOH . G 4 HOH A 34 279 60 HOH HOH . G 4 HOH A 35 280 62 HOH HOH . G 4 HOH A 36 281 64 HOH HOH . G 4 HOH A 37 282 71 HOH HOH . G 4 HOH A 38 283 73 HOH HOH . G 4 HOH A 39 284 74 HOH HOH . G 4 HOH A 40 285 76 HOH HOH . G 4 HOH A 41 286 81 HOH HOH . G 4 HOH A 42 287 82 HOH HOH . G 4 HOH A 43 288 84 HOH HOH . G 4 HOH A 44 289 91 HOH HOH . G 4 HOH A 45 290 94 HOH HOH . G 4 HOH A 46 291 102 HOH HOH . G 4 HOH A 47 292 104 HOH HOH . G 4 HOH A 48 293 107 HOH HOH . G 4 HOH A 49 294 111 HOH HOH . G 4 HOH A 50 295 112 HOH HOH . G 4 HOH A 51 296 113 HOH HOH . G 4 HOH A 52 297 114 HOH HOH . G 4 HOH A 53 298 118 HOH HOH . G 4 HOH A 54 299 121 HOH HOH . H 4 HOH B 1 1003 20 HOH HOH . H 4 HOH B 2 1004 21 HOH HOH . H 4 HOH B 3 1005 22 HOH HOH . H 4 HOH B 4 1006 23 HOH HOH . H 4 HOH B 5 1007 24 HOH HOH . H 4 HOH B 6 1008 40 HOH HOH . H 4 HOH B 7 1009 41 HOH HOH . H 4 HOH B 8 1010 43 HOH HOH . H 4 HOH B 9 1011 45 HOH HOH . H 4 HOH B 10 1012 47 HOH HOH . H 4 HOH B 11 1013 49 HOH HOH . H 4 HOH B 12 1014 52 HOH HOH . H 4 HOH B 13 1015 61 HOH HOH . H 4 HOH B 14 1016 66 HOH HOH . H 4 HOH B 15 1017 67 HOH HOH . H 4 HOH B 16 1018 70 HOH HOH . H 4 HOH B 17 1019 75 HOH HOH . H 4 HOH B 18 1020 79 HOH HOH . H 4 HOH B 19 1021 80 HOH HOH . H 4 HOH B 20 1022 83 HOH HOH . H 4 HOH B 21 1023 86 HOH HOH . H 4 HOH B 22 1024 88 HOH HOH . H 4 HOH B 23 1025 90 HOH HOH . H 4 HOH B 24 1026 93 HOH HOH . H 4 HOH B 25 1027 95 HOH HOH . H 4 HOH B 26 1028 100 HOH HOH . H 4 HOH B 27 1029 106 HOH HOH . H 4 HOH B 28 1030 108 HOH HOH . H 4 HOH B 29 1031 117 HOH HOH . H 4 HOH B 30 1032 120 HOH HOH . I 4 HOH C 1 143 12 HOH HOH . I 4 HOH C 2 144 31 HOH HOH . I 4 HOH C 3 145 33 HOH HOH . I 4 HOH C 4 146 35 HOH HOH . I 4 HOH C 5 147 50 HOH HOH . I 4 HOH C 6 148 54 HOH HOH . I 4 HOH C 7 149 63 HOH HOH . I 4 HOH C 8 150 69 HOH HOH . I 4 HOH C 9 151 72 HOH HOH . I 4 HOH C 10 152 78 HOH HOH . I 4 HOH C 11 153 89 HOH HOH . I 4 HOH C 12 154 103 HOH HOH . I 4 HOH C 13 155 109 HOH HOH . I 4 HOH C 14 156 110 HOH HOH . I 4 HOH C 15 157 116 HOH HOH . I 4 HOH C 16 158 119 HOH HOH . I 4 HOH C 17 159 122 HOH HOH . J 4 HOH D 1 143 6 HOH HOH . J 4 HOH D 2 144 25 HOH HOH . J 4 HOH D 3 145 26 HOH HOH . J 4 HOH D 4 146 27 HOH HOH . J 4 HOH D 5 147 30 HOH HOH . J 4 HOH D 6 148 32 HOH HOH . J 4 HOH D 7 149 34 HOH HOH . J 4 HOH D 8 150 36 HOH HOH . J 4 HOH D 9 151 65 HOH HOH . J 4 HOH D 10 152 68 HOH HOH . J 4 HOH D 11 153 77 HOH HOH . J 4 HOH D 12 154 85 HOH HOH . J 4 HOH D 13 155 87 HOH HOH . J 4 HOH D 14 156 92 HOH HOH . J 4 HOH D 15 157 96 HOH HOH . J 4 HOH D 16 158 97 HOH HOH . J 4 HOH D 17 159 98 HOH HOH . J 4 HOH D 18 160 99 HOH HOH . J 4 HOH D 19 161 101 HOH HOH . J 4 HOH D 20 162 105 HOH HOH . J 4 HOH D 21 163 115 HOH HOH . J 4 HOH D 22 164 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.611 _atom_site.Cartn_y 49.917 _atom_site.Cartn_z -19.405 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #