data_1XY3 # _model_server_result.job_id J_aCwUSuxPI9kkZf7GhbQQ _model_server_result.datetime_utc '2025-03-06 06:21:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":905}' # _entry.id 1XY3 # _exptl.entry_id 1XY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.126 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.67 _cell.angle_gamma 90 _cell.entry_id 1XY3 _cell.length_a 82.753 _cell.length_b 141.936 _cell.length_c 135.082 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L 1 1 E,F,G,H,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SAC 1 A SAC 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C SAC 1 B SAC 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 C C SAC 1 C SAC 1 1_555 C N ALA 2 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 D C SAC 1 D SAC 1 1_555 D N ALA 2 D ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 E C SAC 1 E SAC 1 1_555 E N ALA 2 E ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 F C SAC 1 F SAC 1 1_555 F N ALA 2 F ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 G C SAC 1 G SAC 1 1_555 G N ALA 2 G ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 H C SAC 1 H SAC 1 1_555 H N ALA 2 H ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C5 H5 N5 O' _chem_comp.formula_weight 151.126 _chem_comp.id GUN _chem_comp.mon_nstd_flag . _chem_comp.name GUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 GUN sing 129 n y N9 C4 GUN sing 130 n y N9 HN9 GUN sing 131 n n C8 N7 GUN doub 132 n y C8 H8 GUN sing 133 n n N7 C5 GUN sing 134 n y C5 C6 GUN sing 135 n n C5 C4 GUN doub 136 n y C6 O6 GUN doub 137 n n C6 N1 GUN sing 138 n n N1 C2 GUN sing 139 n n N1 HN1 GUN sing 140 n n C2 N2 GUN sing 141 n n C2 N3 GUN doub 142 n n N2 HN21 GUN sing 143 n n N2 HN22 GUN sing 144 n n N3 C4 GUN sing 145 n n # _atom_sites.entry_id 1XY3 _atom_sites.fract_transf_matrix[1][1] 0.012084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000564 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GUN A 1 900 900 GUN GUN . J 2 GUN B 1 901 901 GUN GUN . K 2 GUN C 1 902 902 GUN GUN . L 2 GUN D 1 903 903 GUN GUN . M 2 GUN E 1 904 904 GUN GUN . N 2 GUN F 1 905 905 GUN GUN . O 2 GUN G 1 906 906 GUN GUN . P 2 GUN H 1 907 907 GUN GUN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 GUN . . . N 2 0.727 -52.433 112.894 0.45 35.31 ? N9 GUN 905 F 1 HETATM 2 C C8 GUN . . . N 2 -0.1 -51.329 112.83 0.45 35.31 ? C8 GUN 905 F 1 HETATM 3 N N7 GUN . . . N 2 -1.111 -51.344 113.688 0.45 35.31 ? N7 GUN 905 F 1 HETATM 4 C C5 GUN . . . N 2 -0.937 -52.564 114.394 0.45 35.31 ? C5 GUN 905 F 1 HETATM 5 C C6 GUN . . . N 2 -1.719 -53.195 115.482 0.45 35.31 ? C6 GUN 905 F 1 HETATM 6 O O6 GUN . . . N 2 -2.737 -52.79 116.057 0.45 35.31 ? O6 GUN 905 F 1 HETATM 7 N N1 GUN . . . N 2 -1.155 -54.443 115.882 0.45 35.31 ? N1 GUN 905 F 1 HETATM 8 C C2 GUN . . . N 2 -0.014 -55.013 115.321 0.45 35.31 ? C2 GUN 905 F 1 HETATM 9 N N2 GUN . . . N 2 0.383 -56.193 115.812 0.45 35.31 ? N2 GUN 905 F 1 HETATM 10 N N3 GUN . . . N 2 0.7 -54.439 114.311 0.45 35.31 ? N3 GUN 905 F 1 HETATM 11 C C4 GUN . . . N 2 0.187 -53.228 113.902 0.45 35.31 ? C4 GUN 905 F 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #