data_1XYD # _model_server_result.job_id FAxX7uSBxqAyTGjr6QsuCw _model_server_result.datetime_utc '2024-10-25 20:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":93}' # _entry.id 1XYD # _exptl.entry_id 1XYD _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 16 A HIS 15 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 A O SER 19 A SER 18 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc4 A ND1 HIS 26 A HIS 25 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc9 A OD2 ASP 64 A ASP 63 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.376 ? metalc ? metalc10 A OD2 ASP 66 A ASP 65 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc11 A OD1 ASP 66 A ASP 65 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc12 A O GLU 68 A GLU 67 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc13 A OE1 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 A OE2 GLU 73 A GLU 72 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc15 A NE2 HIS 86 A HIS 85 1_555 H ZN ZN . B ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc16 A OE1 GLU 90 A GLU 89 1_555 H ZN ZN . B ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc17 E ZN ZN . A ZN 94 1_555 B NE2 HIS 86 B HIS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc18 E ZN ZN . A ZN 94 1_555 B OE1 GLU 90 B GLU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc19 B NE2 HIS 16 B HIS 15 1_555 H ZN ZN . B ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc20 B O SER 19 B SER 18 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc21 B O GLU 22 B GLU 21 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc22 B ND1 HIS 26 B HIS 25 1_555 H ZN ZN . B ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc23 B O LYS 27 B LYS 26 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc24 B OE2 GLU 32 B GLU 31 1_555 F CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc25 B OD1 ASP 62 B ASP 61 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc26 B OD1 ASP 64 B ASP 63 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc27 B OD1 ASP 66 B ASP 65 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc28 B OD2 ASP 66 B ASP 65 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc29 B O GLU 68 B GLU 67 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc30 B OE1 GLU 73 B GLU 72 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc31 B OE2 GLU 73 B GLU 72 1_555 G CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XYD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 92 92 CA CA . D 2 CA A 1 93 93 CA CA . E 3 ZN A 1 94 94 ZN ZN . F 2 CA B 1 92 92 CA CA . G 2 CA B 1 93 93 CA CA . H 3 ZN B 1 94 94 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.092 _atom_site.Cartn_y 2.851 _atom_site.Cartn_z -10.247 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 0 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 93 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 106 _model_server_stats.query_time_ms 6335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #